Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations

Cited by (1,000)

Items 201–300 of 1,000

1. The dogma of the sterile uterus revisited: does microbial seeding occur during fetal life in humans and animals?
   Penelope Banchi, Barbara Colitti, GEERT OPSOMER, Ada Rota, Ann Van Soom · 2023 · Reproduction
2. Clinical metagenomics for diagnosis and surveillance of viral pathogens
   Oscar Enrique Torres Montaguth, Sarah Buddle, Sofia Morfopoulou, Judith Breuer · 2025 · Nature Reviews Microbiology
3. Evaluation of the bacterial ocular surface microbiome in ophthalmologically normal dogs prior to and following treatment with topical neomycin-polymyxin-bacitracin
   Callie M. Rogers, Erin M. Scott, Benjamin Sarawichitr, Carolyn E. Arnold, Jan S. Suchodolski · 2020 · PLoS ONE
4. Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution
   Sepich‐Poore, Gregory D., Guccione, Caitlin, Laplane, Lucie, Pradeu, Thomas, Curtius, Kit, Knight, Rob · 2022 · BioEssays
5. Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert
   Bárbara Fuentes, Alessandra Choque, Francisco Gómez, Jaime Alarcón, Eduardo Castro‐Nallar, Franko Arenas, Daniel A. Contreras, Ramona Mörchen, Wulf Amelung, Claudia Knief et al. · 2022 · Frontiers in Microbiology
6. Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America
   Anthony J. Mannion, Alexander Sheh, Zeli Shen, JoAnn Dzink-Fox, Maria Blanca Piazuelo, Keith T. Wilson, Richard M. Peek, James G. Fox · 2023 · Gut Microbes
7. Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain
   Abigail Shahar Gancz, Andrew G. Farrer, Michelle Pistner Nixon, Sterling Wright, Luis Arriola‐Martinez, Christina Jane Adler, Emily Davenport, Neville J Gully, Alan Cooper, Kate Britton et al. · 2023 · Nature Microbiology
8. Whole genome sequencing revealed microbiome in lung adenocarcinomas presented as ground-glass nodules
   Yijiu Ren, Hang Su, Yunlang She, Chenyang Dai, Dong Xie, Shavira Narrandes, Shu-Jung Huang, Chang Chen, Wayne Wenzhong Xu · 2019 · Translational Lung Cancer Research
9. Ear mite infection is associated with altered microbial communities in genetically depauperate Santa Catalina Island foxes (Urocyon littoralis catalinae)
   Alexandra L. DeCandia, Lara J. Brenner, Julie L. King, Bridgett M. vonHoldt · 2019 · Molecular Ecology
10. Massively parallel sequencing is unlocking the potential of environmental trace evidence
    Jennifer M. Young, Adrian M. T. Linacre · 2020 · Forensic Science International Genetics
11. Convergent alteration of lung tissue microbiota and tumor cells in lung cancer
    Hui Dong, Qiang Tan, Yuanyuan Xu, Yongqiang Zhu, Yaxian Yao, Yuezhu Wang, Chong Li, Hong Li, Guoqing Zhang, Yan Xiong et al. · 2021 · iScience
12. Characterization of the Microbiota Associated With 12-Week-Old Bovine Fetuses Exposed to Divergent in utero Nutrition
    Samat Amat, Devin B. Holman, Kaycie N. Schmidt, Kacie L McCarthy, Sheri T. Dorsam, Alison K K Ward, Pawel P. Borowicz, Lawrence P. Reynolds, Joel S S Caton, Kevin K K Sedivec et al. · 2022 · Frontiers in Microbiology
13. Intratumour microbiome of pancreatic cancer
    Shi-Wei Guan, Quan Lin, Haibo Yu · 2023 · World Journal of Gastrointestinal Oncology
14. Habitat shapes diversity of gut microbiomes in a wild population of blue tits Cyanistes caeruleus
    Szymon Marian Drobniak, Mariusz Cichoń, Katarzyna Janas, Julia Barczyk, Lars Gustafsson, Magdalena Zagalska‐Neubauer · 2021 · Journal of Avian Biology
15. An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics
    Jiaxian Shen, Alexander G. McFarland, Ryan A. Blaustein, Laura J. Rose, K Allison Perry-Dow, Anahid A. Moghadam, Mary K. Hayden, Vincent Bensan Young, Erica Marie Hartmann · 2022 · Microbiome
16. Genomics of natural history collections for understanding evolution in the wild
    Lúa López, Kathryn G. Turner, Emily S. Bellis, Jesse R. Lasky · 2020 · Molecular Ecology Resources
17. Equivolumetric Protocol Generates Library Sizes Proportional to Total Microbial Load in 16S Amplicon Sequencing
    Giuliano Netto Flores Cruz, Ana Paula Christoff, Luiz Felipe Valter de Oliveira · 2021 · Frontiers in Microbiology
18. Evaluating extraction methods to study canine urine microbiota
    Ryan Mrofchak, Christopher C. Madden, Morgan V. Evans, Vanessa L. Hale · 2021 · PLoS ONE
19. Future potential of metagenomics in microbiology laboratories
    Leonard Schuele, Hayley Cassidy, Nilay Peker, John W. A. Rossen, Natacha Couto · 2021 · Expert Review of Molecular Diagnostics
20. Microbial DNA extraction of high-host content and low biomass samples: Optimized protocol for nasopharynx metagenomic studies
    Polona Rajar, Achal Dhariwal, Gabriela Salvadori, Roger Junges, Heidi Aarø Åmdal, Dag Berild, Drude Fugelseth, Ola Didrik Saugstad, Ulrik Lausten‐Thomsen, Gorm O. Greisen et al. · 2022 · Frontiers in Microbiology
21. Microbiome or no microbiome: are we looking at the prenatal environment through the right lens?
    W. Florian Fricke, Jacques Ravel · 2021 · Microbiome
22. A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass
    Joana Pereira‐Marques, Rui M. Ferreira, Céu Figueiredo · 2024 · Gut Microbes
23. Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid
    Montserrat Saladié, Jose Antonio Caparros-Martin, Patricia Agudelo‐Romero, Peter A. B. Wark, Stephen Michael Stick, Fergal O’Gara · 2020 · Frontiers in Microbiology
24. Performance of 16S Metagenomic Profiling in Formalin-Fixed Paraffin-Embedded versus Fresh-Frozen Colorectal Cancer Tissues
    Alessandra Borgognone, Garazi Serna, Marc Noguera-Julián, Lidia Alonso, Mariona Parera, Francesc Català‐Moll, Lucas Rivera Sanchez, Roberta Fasani, Roger Paredes, Paolo Giovanni Nuciforo · 2021 · Cancers
25. A bacterial signature-based method for the identification of seven forensically relevant human body fluids
    Denise Wohlfahrt, Antonio Limjuco Tan‐Torres, Raquel Green, Kathleen Brim, Najai Bradley, Angela Brand, Eric Abshier, Francy Nogales, Kailey Babcock, J. Paul Brooks et al. · 2023 · Forensic Science International Genetics
26. Maternal vaginal microbiome composition does not affect development of the infant gut microbiome in early life
    Scott J Dos Santos, Zahra Pakzad, Arianne Albert, Chelsea N. Elwood, Kirsten Grabowska, Matthew G. Links, Jennifer A. Hutcheon, Evelyn J. Maan, Amee R. Manges, Tim Dumonceaux et al. · 2023 · Frontiers in Cellular and Infection Microbiology
27. The Diagnostic Potential of the Human Blood Microbiome: Are We Dreaming or Awake?
    Francesca Sciarra, Edoardo Franceschini, Federica Campolo, Mary Anna Venneri · 2023 · International Journal of Molecular Sciences
28. Microbial signatures and continuum in endometrial cancer and benign patients
    Anita Semertzidou, Eilbhe Whelan, Ann Smith, Sherrianne Ng, Lauren Roberts, Jan Joris Brosens, Julian Roberto Marchesi, Phillip R. Bennett, David A. MacIntyre, Maria Kyrgiou · 2024 · Microbiome
29. Differences in airway microbiome and metabolome of single lung transplant recipients
    Nirmal Sharma, Grant D. Vestal, Keith M Wille, K. Patel, Feng Cheng, Srinivas M. Tipparaju, Sultan Tousif, Mudassir Meraj Banday, Xin Xu, Landon Shay Wilson et al. · 2020 · Respiratory Research
30. Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
    Andrew G. Farrer, Sterling Wright, Emily Skelly, Raphael Eisenhofer, Keith M. Dobney, Laura Susan Weyrich · 2021 · Scientific Reports
31. The intratumoural microbiota in cancer: new insights from inside
    Yaping An, Wanru Zhang, Tianyu Liu, Bangmao Wang, Hailong Cao · 2021 · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
32. A rarefaction-without-resampling extension of PERMANOVA for testing presence–absence associations in the microbiome
    Yi‐Juan Hu, Glen A. Satten · 2022 · Bioinformatics
33. Infant Skin Bacterial Communities Vary by Skin Site and Infant Age across Populations in Mexico and the United States
    Melissa B. Manus, Sahana Kuthyar, Ana Gabriela Perroni‐Marañón, Alejandra Núñez‐de la Mora, Katherine Ryan Amato · 2020 · mSystems
34. Comparable response of wild rodent gut microbiome to anthropogenic habitat contamination
    Anton Lavrinienko, Anni Hämäläinen, Rasmus Hindström, Eugene Tukalenko, Zbyszek Boratyński, Kati Kivisaari, Timothy Alexander Mousseau, Phillip C. Watts, Tapio Mappes · 2021 · Molecular Ecology
35. Bacterial low-abundant taxa are key determinants of a healthy airway metagenome in the early years of human life
    Marie‐Madlen Pust, Burkhard Tümmler · 2021 · Computational and Structural Biotechnology Journal
36. Validating DNA Extraction Protocols for Bentonite Clay
    Katja Engel, Sara Coyotzi, Melody A. Vachon, Jennifer R. McKelvie, Josh David Neufeld · 2019 · mSphere
37. Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)
    Raphael Eisenhofer, Kristofer M. Helgen, David Taggart · 2021 · Animal Microbiome
38. Progress in Molecular Nanoarchitectonics and Materials Nanoarchitectonics
    Katsuhiko Ariga · 2021 · Molecules
39. Bacterial DNAemia is associated with serum zonulin levels in older subjects
    Giorgio Gargari, Giacomo Mantegazza, Valentina Taverniti, Cristian Del Bo’, Stefano Bernardi, Cristina Andrés‐Lacueva, Raúl González‐Domínguez, Paul Antony Kroon, Mark S. Winterbone, Antonio Cherubini et al. · 2021 · Scientific Reports
40. Ancient Metagenomic Studies: Considerations for the Wider Scientific Community
    Clio S. I. Der Sarkissian, Irina M. Velsko, Anna K. Fotakis, Åshild J. Vågene‬, Alexander Hübner, James A. Fellows Yates · 2021 · mSystems
41. Meconium Microbiome of Very Preterm Infants across Germany
    Jonas Klopp, Pamela Ferretti, Claudius U. Meyer, Katja Hilbert, Annette Haiß, Janina Marißen, Philipp Henneke, Hannes Hudalla, Sabine M. Pirr, Dorothee Viemann et al. · 2022 · mSphere
42. Differences in microbial profile of endometrial fluid and tissue samples in women with in vitro fertilization failure are driven by Lactobacillus abundance
    Kreete Lüll, Merli Saare, Maire Peters, Кахиани Екатерина Инвериевна, Anastasia S. Zhdanova, Andres Salumets, K. Yu. Boyarsky, Elin Org · 2022 · Acta Obstetricia Et Gynecologica Scandinavica
43. Abiotic Treatment to Common Bean Plants Results in an Altered Endophytic Seed Microbiome
    Ari Fina Bintarti, Patrick J. Kearns, Abby Sulesky-Grieb, Ashley L. Shade · 2022 · Microbiology Spectrum
44. Exploration and comparison of bacterial communities present in bovine faeces, milk and blood using 16S rRNA metagenomic sequencing
    Khethiwe Mtshali, Zamantungwa T. H. Khumalo, Stanford Kwenda, Arshad Ismail, Oriel M.M. Thekisoe · 2022 · PLoS ONE
45. Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
    Alexey V. Melnik, Yoshiki Vázquez‐Baeza, Alexander A. Aksenov, Embriette R. Hyde, Andrew C. McAvoy, Mingxun Wang, Ricardo Silva, Ivan Protsyuk, Jason V. Wu, Amina Bouslimani et al. · 2019 · mSystems
46. Biocultural Drivers of Salivary Microbiota in Australian Aboriginal and Torres Strait Islander Children
    Matilda Handsley‐Davis, Emily Skelly, Newell Walter Johnson, Kostas Kapellas, Ratilal Lalloo, Jeroen Kroon, Laura Susan Weyrich · 2021 · Frontiers in Oral Health
47. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance
    João Dourado Santos, Daniel Sobral, Miguel M. Pinheiro, Joana Isidro, Carlijn Bogaardt, Miguel Pinto, Rodrigo Eusébio, André Santos, Rafael Mamede, Daniel L. Horton et al. · 2024 · Genome Medicine
48. Stable, multigenerational transmission of the bean seed microbiome despite abiotic stress
    Abby Sulesky-Grieb, Marie Simonin, Ari Fina Bintarti, Brice Marolleau, Matthieu Barret, Ashley L. Shade · 2024 · mSystems
49. Spatial Heterogeneity of Intratumoral Microbiota: A New Frontier in Cancer Immunotherapy Resistance
    Qiwen Tan, Xiongjing Cao, Falong Zou, Hanwenchen Wang, Lijuan Xiong, Shenghe Deng · 2025 · Biomedicines
50. Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons)
    Sesilje Weiss, David Taggart, Ian Smith, Kristofer M. Helgen, Raphael Eisenhofer · 2021 · Animal Microbiome
51. Repeatability and reproducibility assessment in a large-scale population-based microbiota study: case study on human milk microbiota
    Shirin Moossavi, Kelsey B. Fehr, Ehsan Khafipour, Meghan B. Azad · 2021 · Microbiome
52. Benchmarking laboratory processes to characterise low-biomass respiratory microbiota
    Raïza Hasrat, Jolanda Kool, Wouter A. A. de Steenhuijsen Piters, Mei Ling J. N. Chu, Sjoerd Kuiling, James A. Groot, Elske M. van Logchem, Susana Fuentes, Eelco Franz, Debby Bogaert et al. · 2021 · Scientific Reports
53. Biopsy bacterial signature can predict patient tissue malignancy
    G. E. Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus Joakim Claesson, Mark Anthony Corrigan, Deirdre M O'Hanlon, Mark Tangney · 2021 · Scientific Reports
54. Identification of microbial taxa present in Ctenocephalides felis (cat flea) reveals widespread co-infection and associations with vector phylogeny
    Charlotte Manvell, Hanna L. Berman, Benjamin J. Callahan, Edward Bealmear Breitschwerdt, William Swain, Kelli K. Ferris, Ricardo Guillermo Maggi, Erin W. Lashnits · 2022 · Parasites & Vectors
55. Important role of endogenous microbial symbionts of fish gills in the challenging but highly biodiverse Amazonian blackwaters
    François‐Étienne Sylvain, Nicolas Leroux, Éric Normandeau, Jaqueline Custódio da Costa, Mercier Pierre-Luc, Sidki Bouslama, Aleicia Holland, Danilo C. Barroso, Adalberto Luís Val, Nicolas Derôme · 2023 · Nature Communications
56. The human periconceptional maternal-embryonic space in health and disease
    Inmaculada Moreno, Antonio Capalbo, Aymara Mas, Tamara Garrido‐Gómez, Beatriz Rosón, Maurizio Poli, Eva Dimitriadis, Xavier Santamaría, Felipe Vilella, Carlos Simón · 2023 · Physiological Reviews
57. The Microbiome, Ocular Surface, and Corneal Disorders
    Michael J. Zilliox, Charles S. Bouchard · 2023 · American Journal Of Pathology
58. Midtrimester amniotic fluid from healthy pregnancies has no microorganisms using multiple methods of microbiologic inquiry
    Yu Liu, Xiang Li, Baoli Zhu, Haijuan Zhao, Qubo Ai, Yulong Tong, Shengtang Qin, Ye Feng, Yutong Wang, Shuxian Wang et al. · 2020 · American Journal of Obstetrics and Gynecology
59. Microbiology in Water-Miscible Metalworking Fluids
    Frederick Jay Passman, Peter Küenzi · 2020 · Tribology Transactions
60. The First 1000 Days: Assembly of the Neonatal Microbiome and Its Impact on Health Outcomes
    Joann Romano-Keeler, Jun Sun · 2022 · Newborn
61. The community ecology perspective of omics data
    Stephanie D. Jurburg, François Buscot, Antonis Chatzinotas, Narendrakumar M. Chaudhari, Adam Thomas Clark, Magda Garbowski, Matthias Grenié, Erik F. Y. Hom, Canan Karakoç, Sue Marr et al. · 2022 · Microbiome
62. Anopheline mosquito saliva contains bacteria that are transferred to a mammalian host through blood feeding
    Anastasia Accoti, Claudia Damiani, Emilia Nunzi, Alessia Cappelli, Gloria Iacomelli, Giulia Monacchia, Antonella Turco, Francesco D’Alò, Matthew J. Peirce, Guido Favia et al. · 2023 · Frontiers in Microbiology
63. Metagenomic analysis of healthy and diseased peri-implant microbiome under different periodontal conditions: a cross-sectional study
    Liang Song, Ziying Feng, Qianrong Zhou, Xingwen Wu, Limin Zhang, Yang Sun, Ruixue Li, Huijuan Chen, Fei Yang, Youcheng Yu · 2024 · BMC Oral Health
64. The landscape of microbial associations in human cancer
    Abraham Gihawi, Henry M. Wood, Jeremy Clark, Justin O’Grady, Rosalind A. Eeles, David C. Wedge, G. Maria Jakobsdottir, Gkikas Magiorkinis, Andrew Graeme Schache, Liam M. Masterson et al. · 2025 · Science Translational Medicine
65. Cell free DNA from respiratory pathogens is detectable in the blood plasma of Cystic Fibrosis patients
    Sara L. Rassoulian Barrett, Elizabeth A. Holmes, Dustin R. Long, Ryan C. Shean, Gilbert E. Bautista, Sumedha Ravishankar, Vikas Peddu, Brad T. Cookson, Pradeep Kumar Singh, Alexander L. Greninger et al. · 2020 · Scientific Reports
66. Microbiome genomics for cancer prediction
    Lorenz Adlung, Eran Elinav, Tim F. Greten, Firouzeh Korangy · 2020 · Nature Cancer
67. Revised Taxonomy and Expanded Biodiversity of the Phytomyxea (Rhizaria, Endomyxa)
    Michaela Hittorf, Susanne Letsch‐Praxmarer, Alexandra Windegger, David Bass, Martín Kirchmair, Sigrid Neuhauser · 2020 · Journal of Eukaryotic Microbiology
68. Tracking de novo protein synthesis in the activated sludge microbiome using BONCAT-FACS
    Zhe Du, Sebastian Behrens · 2021 · Water Research
69. Is there an association between the vaginal microbiome and first trimester miscarriage? A prospective observational study
    Monica Shahid, Julie Anne Quinlivan, Michael John Peek, Natalia Castaño‐Rodríguez, George Louis Mendz · 2021 · Journal of obstetrics and gynaecology research
70. The microbiome of common bedding materials before and after use on commercial dairy farms
    Tui Ray, Tara N. Gaire, Christopher Dean, Sam M. Rowe, S. Godden, Noelle Robertson Noyes · 2022 · Animal Microbiome
71. Human soft tissue sarcomas harbor an intratumoral viral microbiome which is linked with natural killer cell infiltrate and prognosis
    Lauren M. Perry, Sylvia M. Cruz, Kara Teresa Kleber, Sean James Judge, Morgan Angus Darrow, Louis B Jones, Ugur Nur Basmaci, Nikhil Joshi, Matthew Lee Settles, Blythe P Durbin-Johnson et al. · 2023 · Journal for ImmunoTherapy of Cancer
72. Next-generation DNA sequencing offers diagnostic advantages over traditional culture testing
    Annabelle Damerum, Shachar Malka, Nicolle T W Lofgren, Gina Vecere, Janina A. Krumbeck · 2023 · American Journal of Veterinary Research
73. Ecoevolutionary processes structure milk microbiomes across the mammalian tree of life
    Mia Keady, Randall R. Jiménez, Morgan Bragg, Jenna C. P. Wagner, Sally L. Bornbusch, Michael L. Power, Carly R. Muletz‐Wolz · 2023 · Proceedings of the National Academy of Sciences
74. Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea
    Huan Zhang, Minxiao Wang, Hao Wang, Hao Chen, Lei Cao, Zhaoshan Zhong, Chao Lian, Li Zhou, Chaolun Li · 2022 · Scientific Data
75. Comprehensive Assessment of the Intrinsic Pancreatic Microbiome
    Austin M. Eckhoff, Ashley A. Fletcher, Matthew S. Kelly, Anders B. Dohlman, Caitlin A. McIntyre, Xiling Shen, Matthew K. Iyer, Daniel P. Nussbaum, Peter J. Allen · 2024 · Annals of Surgery
76. Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota
    Shirin Moossavi, Faisal Atakora, Kelsey B. Fehr, Ehsan Khafipour · 2020 · BMC Microbiology
77. Cerumen microbial community shifts between healthy and otitis affected dogs
    Giorgia Borriello, Rubina Paradiso, Carlotta Catozzi, Roberta Brunetti, Paola Roccabianca, Marita Georgia Riccardi, Bianca Cecere, Cristina Lecchi, Giovanna Fusco, Fabrizio Ceciliani et al. · 2020 · PLoS ONE
78. The microbial community associated with pea seeds (Pisum sativum) of different geographical origins
    Valentine Chartrel, Éric Dugat‐Bony, Anne‐Sophie Sarthou, Sophie Huchette, Pascal Bonnarme, Françoise Irlinger · 2021 · Plant and Soil
79. Advancing and refining archaeological dental calculus research using multiomic frameworks
    Sterling Wright, Keith M. Dobney, Laura S. Weyrich · 2021 · STAR Science & Technology of Archaeological Research
80. Consistency of Bacterial Communities in a Parasitic Worm: Variation Throughout the Life Cycle and Across Geographic Space
    Fátima Jorge, Nolwenn Marie Dheilly, Céline Froissard, Eleanor Wainwright, Robert Poulin · 2021 · Microbial Ecology
81. Towards standardized and reproducible research in skin microbiomes
    Matti O. Ruuskanen, Deepti Vats, Renuka Potbhare, Ameeta RaviKumar, Eveliina Munukka, Richa Ashma, Leo Lahti · 2022 · Environmental Microbiology
82. Gut Microbial Ecology of Five Species of Sympatric Desert Rodents in Relation to Herbivorous and Insectivorous Feeding Strategies
    Kevin D. Kohl, Etan Dieppa-Colón, José Goyco-Blas, Karen Peralta-Martínez, Luke Scafidi, Sarth Shah, Emma Zawacki, Nick Barts, Young I Ahn, Stefanie Hedayati et al. · 2022 · Integrative and Comparative Biology
83. The atmosphere: a transport medium or an active microbial ecosystem?
    Rachael J. Lappan, Jordan Thakar, Laura Molares Moncayo, Alexi C. Besser, James Andrew Bradley, Jacqueline Goordial, Elizabeth Trembath‐Reichert, Chris Greening · 2024 · The ISME Journal
84. Lactobacillus acidophilus potentiates oncolytic virotherapy through modulating gut microbiota homeostasis in hepatocellular carcinoma
    Jiayu Zhang, Jinneng Yang, Jinyan Luo, Weili Wu, Haidan Luo, Wenxia Wei, Haimei Lyu, Yuzhi Wang, Hairong Yi, Yijing Zhang et al. · 2025 · Nature Communications
85. Optimization of subsampling, decontamination, and DNA extraction of difficult peat and silt permafrost samples
    Alireza Saidi‐Mehrabad, Patrick Neuberger, Maria A. Cavaco, DUANE G. FROESE, Brian Lanoil · 2020 · Scientific Reports
86. The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection
    Rishi Chanderraj, Christopher A. Brown, Kevin J. Hinkle, Nicole R. Falkowski, Robert J. Woods, Robert P. Dickson · 2022 · Microbiome
87. Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
    Ostaizka Aizpurua, Robert R. Dunn, Lars Hestbjerg Hansen, Marcus Thomas P. Gilbert, Antton Alberdi · 2023 · Critical Reviews in Biotechnology
88. Mechanisms of benzene and benzo[a]pyrene biodegradation in the individually and mixed contaminated soils
    Mukhtiar Ali, Qing Wang, Zhuanxia Zhang, Xing Chen, Min Ma, Zhiwen Tang, Rui Si Li, Biao Tang, Zhongyuan Li, Xiangfeng Huang et al. · 2024 · Environmental Pollution
89. Mosaic Somatic Gene Recombination as a Potentially Unifying Hypothesis for Alzheimer’s Disease
    Gwendolyn E. Kaeser, Jerold J. M. Chun · 2020 · Frontiers in Genetics
90. Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota
    Anton Lavrinienko, Eugene Tukalenko, Timothy Alexander Mousseau, Luke Thompson, Rob D. Knight, Tapio Mappes, Phillip C. Watts · 2020 · Scientific Data
91. Untangling the web of intratumor microbiota in lung cancer
    Weici Laurence Liu, Jingtong Xu, Zheshun Pi, Yundi Chen, Guanyu Jiang, Yuan Wan, Wenjun Mao · 2023 · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
92. Microbiota and urinary tumor immunity: Mechanisms, therapeutic implications, and future perspectives
    Dengxiong Li, Ruicheng Wu, Qingxin Yu, Zhouting Tuo, Jie Wang, Koo Han Yoo, Wuran Wei, Yubo Yang, Luxia Ye, Yiqing Guo et al. · 2024 · Chinese Journal of Cancer Research
93. Cancer microbiota: a focus on tumor-resident bacteria
    Gerlanda Vella, María Rescigno · 2025 · EMBO Reports
94. Bacteria in the amniotic fluid without inflammation: early colonization vs. contamination
    Eunjung Jung, Roberto J. Romero, Bo Hyun Yoon, Kevin R. Theis, Dereje W. Gudicha, Adi Laurentiu Tarca, Ramiro Jesús Diaz Primera, Andrew D. Winters, Nardhy Gomez‐Lopez, Lami Yeo et al. · 2021 · Journal of Perinatal Medicine
95. Does the Amniotic Fluid of Mice Contain a Viable Microbiota?
    Andrew D. Winters, Roberto J. Romero, Jonathan M. Greenberg, José Galaz, Zachary Shaffer, Valeria Garcia‐Flores, David J. Kracht, Nardhy Gomez‐Lopez, Kevin R. Theis · 2022 · Frontiers in Immunology
96. Metagenomic next-generation sequencing for the diagnosis of fever of unknown origin in pediatric patients with hematological malignancy
    Ping Zhang, Zi‐Han Zhang, Juan Liang, Di-Yin Shen, Jiang Li, Di Wang, Fenfen Jin, Hua Song, Jingying Zhang, Weiqun Xu et al. · 2022 · Clinica Chimica Acta
97. Microbiome analysis as a platform R&D tool for parasitic nematode disease management
    G. E. Hogan, Sidney P. Walker, Frank Turnbull, Tânia Curião, Alison A. Morrison, Yensi Flores Bueso, Leigh Andrews, Marcus Joakim Claesson, Mark Tangney, David J. Bartley · 2019 · The ISME Journal
98. Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes
    Samuel Verbanic, Colin Y. Kim, John M. Deacon, Irene A. Chen · 2019 · BMC Microbiology
99. A Host-Specific Blocking Primer Combined with Optimal DNA Extraction Improves the Detection Capability of a Metabarcoding Protocol for Canine Vector-Borne Bacteria
    Lucas G. Huggins, Anson V. A. Koehler, Bettina Schunack, Tawin Inpankaew, Rebecca Justine Traub · 2020 · Pathogens
100. Placentas delivered by pre‐pregnant obese women have reduced abundance and diversity in the microbiome
     Paula A. Benny, Fadhl Alakwaa, Corbin Dirkx, Ryan J. Schlueter, Thomas Wolfgruber, Ingrid Ying-Yu Chern, Suzie Hoops, Dan Knights, Lana X. Garmire · 2021 · The FASEB Journal