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Serine in plants: biosynthesis, metabolism, and functions
Abstract
Serine (Ser) has a fundamental role in metabolism and signaling in living organisms. In plants, the existence of different pathways of Ser biosynthesis has complicated our understanding of this amino acid homeostasis. The photorespiratory glycolate pathway has been considered to be of major importance, whereas the nonphotorespiratory phosphorylated pathway has been relatively neglected. Recent advances indicate that the phosphorylated pathway has an important function in plant metabolism and development. Plants deficient in this pathway display developmental defects in embryos, male gametophytes, and roots. We propose that the phosphorylated pathway is more important than was initially thought because it is the only Ser source for specific cell types involved in developmental events. Here, we discuss its importance as a link between metabolism and development in plants.
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“Banana peel is a cheap source of starch, crude lipids, proteins, dietary fibers and polyunsaturated fatty acids, especially linoleic and alpha-linolenic acid, pectin, minerals and essential amino acids (Table 1).”
From Functional, nutritional and medicinal potential of banana peel (2023) · cites this paper as [31]
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Amino Acid Catabolism in Plants
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BackgroundCassava haplotype map highlights fixation of deleterious mutations during clonal propagation
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“It is possible that PGDH2 participates not in serine but in 2-oxoglutarate biosynthesis that needs to proceed also at high concentrations of serine (Ros et al., 2014).”
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“Serine is derived from the glycolytic intermediate 3-phosphoglycerate [9], which in turn can be converted into glycine by serine hydroxymethyl transferase [10].”
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“Such a fluctuation is in agreement with the major importance of the photorespiratory pathway for serine biosynthesis in the leaf (Ros et al., 2014) and the fact that serine may act as a metabolic signal for the transcriptional regulation of photorespiration (Timm et al.”
BackgroundChemical reactivity drives spatiotemporal organisation of bacterial metabolism
de Lorenzo, V., Sekowska, A., & Danchin, A. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12089 · Cited by 84
“evident in plants (Christensen and MacKenzie, 2006), where serine biosynthesis follows different routes in each of three plant compartments (Ros et al., 2014).”
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“Among the three amino acids in this family, Ser has an important role in the control of plant development and metabolism [47], which function may be influenced by the light spectrum on the basis of the present results.”
BackgroundGaufichon, L., Marmagne, A., Belcram, K., et al. (2017) · The Plant Journal · doi:10.1111/tpj.13567 · Cited by 76
Kishor, P. B. K., Suravajhala, R., Rajasheker, G., Nagaraju, M., Shridhar, K. K., Dhulala, D., Scinthia, K. P., Divya, K., Doma, M., Edupuganti, S., et al. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.546213 · Cited by 74
Evolution of a biochemical model of steady‐state photosynthesis
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“(2018) and measurements of Abadie, Bathellier, and Tcherkez (2018) that αS was often much higher than αG, reflecting high demands for serine due to its important role in the one-carbon metabolism and as precursor for several other amino acids and phospholipids (Ros et al., 2014).”
BackgroundSavarese, C., Cozzolino, V., Verrillo, M., et al. (2022) · Plant and Soil · doi:10.1007/s11104-022-05634-8 · Cited by 69
“Apart from its proteinogenic function, serine plays an essential role in signalling mechanisms, plant photorespiration and biosynthesis of several biomolecules required for cell proliferation (Ros et al. 2014).”
BackgroundDual functioning of plant arginases provides a third route for putrescine synthesis
Patel, J., Ariyaratne, M., Ahmed, S., et al. (2017) · Plant Science · doi:10.1016/j.plantsci.2017.05.011 · Cited by 67
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“The AAs play important roles in plants as sources of building blocks for membrane proteins and enzymes and act as substrates of essential primary metabolites and precursors of secondary metabolites [22,69].”
BackgroundHumboldt Review: Photorespiration – Rubisco's repair crew
Bauwe, H. (2022) · Journal of Plant Physiology · doi:10.1016/j.jplph.2022.153899 · Cited by 60
On the metabolic interactions of (photo)respiration
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“These results indicate the possible involvement of alternative metabolic routes providing precursors for these metabolites, including serine (Ros et al., 2014).”
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Rosa‐Téllez, S., Alcántara‐Enguídanos, A., Martínez-Seidel, F., Casatejada‐Anchel, R., Saeheng, S., Bailes, C., Erban, A., Medeiros, D. B., Alepuz, P. M., Matus, J. T., et al. (2023) · The Plant Cell · doi:10.1093/plcell/koad256 · Cited by 61
Self-citationModde, K., Timm, S., Florian, A., et al. (2016) · Journal of Experimental Botany · doi:10.1093/jxb/erw467 · Cited by 59
“Daytime serine depletion induces the phosphoserine pathway of serine synthesis The phosphoserine pathway is considered the main route of serine synthesis in plants at night (Benstein et al., 2013; Cascales-Miñana et al., 2013; Ros et al., 2014).”
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The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism
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Self-citationLi, J., Liu, W., Lian, Y., Shi, R., Wang, Q., & Zeb, A. (2022) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2022.12.008 · Cited by 56
Metabolic dynamics and physiological adaptation of Panax ginseng during development
Kim, Y., Joo, S. C., Shi, J., Hu, C., Quan, S., Hu, J., Sukweenadhi, J., Mohanan, P., Yang, D., & Zhang, D. (2017) · Plant Cell Reports · doi:10.1007/s00299-017-2236-7 · Cited by 55
“Consistent with the high accumulation of Ser in Y6L and Y6R, betaine, an osmoprotectant associated with drought/ salt response in plants (Ros et al. 2014), was the highest accumulated metabolite in Y4L (tenfold) and Y6L (27-fold) as compared with that in Y1L (Tables 1; S3, S5).”
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Current Insights into the Redox Regulation Network in Plant Chloroplasts
Yoshida, K., & Hisabori, T. (2023) · Plant and Cell Physiology · doi:10.1093/pcp/pcad049 · Cited by 41
“PGDH catalyzes the first committed step of Ser biosynthesis in chloroplasts (Ros et al. 2014).”
BackgroundAnoman, A. D., Muñoz‐Bertomeu, J., Rosa‐Téllez, S., et al. (2015) · PLANT PHYSIOLOGY · doi:10.1104/pp.15.00696 · Cited by 40
Self-citationZarei, A., Brikis, C. J., Bajwa, V., Chiu, G. Z., Simpson, J. P., DeEll, J. R., Bozzo, G. G., & Shelp, B. J. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.01399 · Cited by 40
“…processes: the peroxisome during the photorespiratory or non-photorespiratory synthesis of serine (Bauwe et al., 2010; Hoover et al., 2013; Ros et al., 2014); the glyoxysome during fatty acid catabolism (Kunze et al., 2006); the cytosol during the interconversion of organic acids…”
BackgroundMethodWilkes, E. B., Sessions, A. L., Zeichner, S. S., et al. (2022) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.9347 · Cited by 38
Abadie, C., Bathellier, C., & Tcherkez, G. G. B. (2018) · New Phytologist · doi:10.1111/nph.14984 · Cited by 38
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“in signalling mechanisms, as one of the three amino acids that are phosphorylated by kinases [29].”
BackgroundEisenhut, M., Hocken, N., & Weber, A. P. M. (2014) · Cell Calcium · doi:10.1016/j.ceca.2014.10.007 · Cited by 35
Amino Acid Catabolism During Nitrogen Limitation in Phaeodactylum tricornutum
Pan, Y., Hu, F., Chen, Y., Li, C., Huang, T., & Hu, H. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.589026 · Cited by 35
“, serine, proline, and leucine) have been shown to act as signaling molecules in plants (Szabados and Savouré, 2010; Häusler et al., 2014; Ros et al., 2014).”
BackgroundYunus, I. S., Liu, Y., & Nakamura, Y. (2016) · The Plant Journal · doi:10.1111/tpj.13278 · Cited by 34
Abrahamian, M., Kagda, M. S., Ah‐Fong, A. M. V., & Judelson, H. S. (2017) · BMC Evolutionary Biology · doi:10.1186/s12862-017-1087-8 · Cited by 34
“In non-stramenopiles, these are cytosolic [18, 19].”
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“Nevertheless, it is important to note that serine can be synthesized by photorespiratory and non-photorespiratory pathways (Ros et al. , 2014).”
BackgroundYoshida, K., & Hisabori, T. (2020) · Plant and Cell Physiology · doi:10.1093/pcp/pcaa174 · Cited by 32
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“The increase in serine (Figure 5F), on the other hand, appears to be related to increased photorespiration [68,69].”
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“It helps in signaling against environmental and abiotic stressors and threats (Ros et al., 2014).”
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“In plants, animals and heterotrophic bacteria, serine is synthesized via the so-called phosphorylated or phosphoserine pathway, with phosphoserine as a key intermediate (Umbarger et al., 1963; Ros et al., 2014) (KEGG database: http://www.”
BackgroundRedox regulation of free amino acid levels in Arabidopsis thaliana
Gulyás, Z., Simon‐Sarkadi, L., Badics, E., et al. (2016) · Physiologia Plantarum · doi:10.1111/ppl.12510 · Cited by 30
“Serine has a crucial role in plant development and metabolism (Ros et al. 2014) and in responding to biotic and abiotic stress effects (Ho and Saito 2001, Benstein et al.”
BackgroundKito, K., Tsutsumi, K., Rai, V., et al. (2017) · PROTOPLASMA · doi:10.1007/s00709-017-1127-7 · Cited by 30
“It is known that serine is a major source of methyl group for intracellular methylation reactions (Ros et al. 2014).”
BackgroundInfluentialYang, H., Li, Y., Zhao, J., Chen, Z., Huang, X., & Fan, G. (2023) · Food Research International · doi:10.1016/j.foodres.2023.113399 · Cited by 31
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“In addition to Pro, the concentrations of many amino acids increased under stress conditions, including Ser and Thr, which have been reported to increase in response to stress and which have demonstrated roles in chemical defense against abiotic stresses and in plant growth and development, cell division, and phytohor…”
BackgroundMikula, K., Konieczka, M., Taf, R., et al. (2022) · Environmental Science and Pollution Research · doi:10.1007/s11356-022-20621-3 · Cited by 29
“Serine Ser 255 ± 38 296 ± 44 2601 ± 390 Regulation of the water balance (Ros et al. 2014)”
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“Phosphoserine aminotransferase catalyzes the reaction of 3-phosphohydroxypyruvate to 3- phosphoserin, which is the pivotal step of L-serine biosynthesis pathway in plants (Ros et al. 2014).”
Targeting the Serine Pathway: A Promising Approach against Tuberculosis?
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“3-PGA, 3-phosphoglycerate; 3PHP, 3-phosphohydroxypyruvate; 3-PS, 3-Phospho-L-Serine; PGDH, Phosphoglycerate dehydrogenase; PSAT, Phosphoserine aminotransferase; PSP, Phosphoserine phoshatase; SHMT, Serine hydroxymethyltransferase; Pi, PO3− 4 ; TCA, tricarboxylic acid cycle or Krebs cycle [46].”
Stromal NADH supplied by PHOSPHOGLYCERATE DEHYDROGENASE3 is crucial for photosynthetic performance
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“Athird so far overlooked option is the PPSB (Ros et al., 2014).”
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“Exogenous applications of amino acids regulate physio-chemical developments in crops under varied climatic conditions (Moreira and Moraes, 2017; Ros et al., 2014).”
BackgroundMolecular Basis of Soybean Resistance to Soybean Aphids and Soybean Cyst Nematodes
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“Also, previous reports suggested that amino acid 18 homeostasis could have regulatory functions in maintaining plant growth and 19 development (Walch-Liu et al. 2006; Yu et al. 2013; Ros et al. 2014).”
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“This pathway is more important because it is the only serine source for specific cell types involved in developmental events in plants (Ros et al., 2014).”
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Schmidt, É. C., Felix, M. R. D. L., Kreusch, M., et al. (2015) · Journal of Applied Phycology · doi:10.1007/s10811-015-0737-8 · Cited by 25
“Serine is responsible for forming part of proteins and performing catalytic functions in many enzymes (Ros et al. 2014), and it is involved in the responses to biotic and abiotic stresses in land plants (Ros et al.”
BackgroundInfluentialRuszkowski, M., Sekula, B., Ruszkowska, A., & Dauter, Z. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00584 · Cited by 26
“The glycolate pathway, where SHMT acts to biosynthesize Ser in plants, is one of the three routes of Ser biosynthesis; others are glycerate and phosphorylated pathways (Ros et al., 2014).”
BackgroundDeficiency in the Phosphorylated Pathway of Serine Biosynthesis Perturbs Sulfur Assimilation
Anoman, A. D., Flores‐Tornero, M., Benstein, R. M., Blau, S., Rosa‐Téllez, S., Bräutigam, A., Fernie, A. R., Muñoz‐Bertomeu, J., Schilasky, S., Meyer, A. J., et al. (2019) · PLANT PHYSIOLOGY · doi:10.1104/pp.18.01549 · Cited by 25
“…nonphotorespiratory pathways (PPSB and glycerate pathways) raised the question of whether the glycolate pathway is sufficient to supply Ser to all plant cell types (heterotrophic/ autotrophic), and under different environmental (i.e. day/night) and developmental conditions (Ros et al., 2013, 2014).”
BackgroundMethodInfluentialSelf-citationMechanisms of Sugar Beet Response to Biotic and Abiotic Stresses
Yu, B., Chen, M., Грин, И. Р., & Ma, C. (2020) · Advances in experimental medicine and biology · doi:10.1007/978-3-030-41283-8_10 · Cited by 25
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Kumar, V., Malhotra, N., Pal, T., et al. (2016) · 3 Biotech · doi:10.1007/s13205-016-0417-7 · Cited by 24
“Further existence of multiple pathways for serine biosynthesis in plants, viz. phosphorylated, glycolate and glycerate pathways complicated our realization of atisine production in A. heterophyllum (Ros et al. 2014).”
BackgroundInfluentialLaporte, D., González, A., & Moenne, A. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.00990 · Cited by 23
“Serine is synthesized from 3-phophoglycerate produced in glycolysis and it is the precursor of methionine, cysteine and glycine (Ros et al., 2014).”
BackgroundAre changes in sulfate assimilation pathway needed for evolution of C4 photosynthesis?
Gerlich, S. C., & Kopřiva, S. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2014.00773 · Cited by 23
Gerlich, S. C., Walker, B. J., Krueger, S., & Kopřiva, S. (2018) · PLANT PHYSIOLOGY · doi:10.1104/pp.18.00520 · Cited by 23
Self-citationHilgers, E. J. A., Schöttler, M. A., Mettler‐Altmann, T., et al. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.01331 · Cited by 23
Self-citationVolkova, P., Clément, G., Макаренко, Е. С., Kazakova, E., Bitarishvili, S. V., & Lychenkova, M. A. (2020) · Dose-Response · doi:10.1177/1559325820914186 · Cited by 22
“Its accumulation in plants grown under low temperature and elevated salinity conditions has been reported.(41) Glycerate concentrations decrease in roots of irradiated plants (Figure 2) can reflect the photosynthetic inhibition: less photorespiration and less glycerate.”
BackgroundŠimon, M., Shen, Z., Ghoto, K., et al. (2020) · Plant and Soil · doi:10.1007/s11104-020-04772-1 · Cited by 21
“The simultaneous Zn-induced up-regulation of TPIs and up-regulation of two isoforms of cysteine synthase (spots 3302 and 3310) (Table 1), however, suggests TPI provided glyceraldehyde-3-phosphate (GAP) for cysteine synthesis via serine (Ros et al. 2014).”
BackgroundWang, H., Xia, X., & An, L. (2021) · Agronomy · doi:10.3390/agronomy11010102 · Cited by 21
“In plants, serine is predominantly generated during the overall process of photorespiration [35].”
BackgroundRoot-Expressed Rice PAP3b Enhances Secreted APase Activity and Helps Utilize Organic Phosphate
Bhadouria, J., Mehra, P., Verma, L., Pazhamala, L. T., Rumi, R., Panchal, P., Sinha, A. K., & Giri, J. (2023) · Plant and Cell Physiology · doi:10.1093/pcp/pcad013 · Cited by 21
Meng, S., Wang, X., Bian, Z., Li, Z., Yang, F., Wang, S., Yoder, J. I., & Lu, J. (2021) · Environmental and Experimental Botany · doi:10.1016/j.envexpbot.2021.104460 · Cited by 21
Killiny, N. (2016) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2016.09.002 · Cited by 20
“…and 0.5 mM in xylem sap, suggesting that auxins, end products of serine 206 metabolism, are transported in both phloem and xylem vascular systems (Ros et al., 2014). γ-207 aminobutyric acid (GABA), a nonprotein amino acid also synthesized from glutamate, was found 208 M AN US CR IP T AC CE PT…”
BackgroundInfluentialWalsh, C. A., Bräutigam, A., ROBERTS, M. R., & Lundgren, M. R. (2022) · Journal of Experimental Botany · doi:10.1093/jxb/erac465 · Cited by 19
“The reduced photorespiratory flux in C4 leaves will require serine biosynthesis to be re-routed, either through its import via a different organ, the glycerate pathway, or via the phosphorylated pathway of serine synthesis (Ros et al., 2014; Zimmermann et al., 2021).”
BackgroundEvans, E. M., Freund, D. M., Sondervan, V. M., Cohen, J. D., & Hegeman, A. D. (2018) · Frontiers in Chemistry · doi:10.3389/fchem.2018.00191 · Cited by 18
“The main source of serine biosynthesis in most conditions is the glycolate pathway (Douce et al., 2001; Ros et al., 2014).”
Background
Metadata
- Authors
- Ros, R., Muñoz-Bertomeu, J., & Krueger, S.
- Affiliations
- Universitat de València (ES)
- University of Cologne (DE)
- Corresponding author
- Ros, Roc
- Venue
- Trends in Plant Science
- Publisher
- Elsevier BV
- Published
- 2014-09
- Volume
- 19
- Issue
- 9
- Pages
- 564-569
- ISSN
- 1360-1385 (ISSN-L)
- OpenAlex
- W2073447660
- Semantic Scholar
- 154570f017e6fc826ddb368e9b522b6e8b67ae54
- Cited by
- 279
- References
- 48
- Citations by year
- 2026: 19 · 2025: 31 · 2024: 29 · 2023: 30 · 2022: 33 · 2021: 25 · 2020: 33 · 2019: 20 · 2018: 17 · 2017: 16 · 2016: 15 · 2015: 9 · 2014: 2
- FWCI
- 1.59
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Trends in Plant Science (publishedVersion)
- PubMed (publishedVersion)
- Kölner Universitäts PublikationsServer (Universität zu Köln) (publishedVersion)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant nutrient uptake and metabolism
- Life Sciences › Agricultural and Biological Sciences › Agronomy and Crop Science › Nitrogen and Sulfur Effects on Brassica
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Keywords
- serine biosynthesis, serine metabolism, amino acid homeostasis, plant development, embryonic development, male gametophyte development, root development
- MeSH terms
- Glycolysis, Phosphorylation, Photosynthesis, Plant Proteins, Plants, Seeds, Serine, Stress, Physiological, Gene Expression Regulation, Plant, Plant Roots
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