Dissection of a rapidly evolving wheat resistance gene cluster by long-read genome sequencing accelerated the cloning of Pm69
Open accessPublished version of a preprint
Abstract
Gene cloning in repeat-rich polyploid genomes remains challenging. Here, we describe a strategy for overcoming major bottlenecks in cloning of the powdery mildew resistance gene (R-gene) Pm69 derived from tetraploid wild emmer wheat. A conventional positional cloning approach was not effective owing to suppressed recombination. Chromosome sorting was compromised by insufficient purity. A Pm69 physical map, constructed by assembling Oxford Nanopore Technology (ONT) long-read genome sequences, revealed a rapidly evolving nucleotide-binding leucine-rich repeat (NLR) R-gene cluster with structural variations. A single candidate NLR was identified by anchoring RNA sequencing reads from susceptible mutants to ONT contigs and was validated by virus-induced gene silencing. Pm69 is likely a newly evolved NLR and was discovered in only one location across the wild emmer wheat distribution range in Israel. Pm69 was successfully introgressed into cultivated wheat, and a diagnostic molecular marker was used to accelerate its deployment and pyramiding with other R-genes.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEMPreprint
Li, H. (2013) · arXiv (Cornell University) · doi:10.48550/arxiv.1303.3997 · Cited by 9,547 · see citing works
Walker, B. J., Abeel, T., Shea, T., Priest, M., Abouelliel, A., Sakthikumar, S., Cuomo, C. A., Zeng, Q., Wortman, J. R., Young, S., et al. (2014) · PLoS ONE · doi:10.1371/journal.pone.0112963 · Cited by 8,998 · see citing works
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Appels, R., Eversole, K., Stein, N., Feuillet, C., Keller, B., Rogers, J., Pozniak, C. J., Choulet, F., Distelfeld, A., Poland, J., et al. (2018) · Science · doi:10.1126/science.aar7191 · Cited by 3,107 · see citing works
Self-citationOpportunities and challenges in long-read sequencing data analysis
Amarasinghe, S. L., Su, S., Dong, X., Zappia, L., Ritchie, M. E., & Gouil, Q. (2020) · Genome Biology · doi:10.1186/s13059-020-1935-5 · Cited by 2,530 · see citing works
PacBio Sequencing and its Applications
Rhoads, A., & Au, K. F. (2015) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2015.08.002 · Cited by 2,338 · see citing works
Shizuya, H., Birren, B. W., Kim, U. J., Mancino, V., Slepak, T. I., Tachiiri, Y., & Simon, M. I. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.18.8794 · Cited by 1,672 · see citing works
A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat
Krattinger, S. G., Lagudah, E. S., Spielmeyer, W., Singh, R. P., Huerta‐Espino, J., McFadden, H., Bossolini, E., Selter, L. L., & Keller, B. (2009) · Science · doi:10.1126/science.1166453 · Cited by 1,387 · see citing works
Three decades of nanopore sequencing
Deamer, D., Akeson, M., & Branton, D. (2016) · Nature Biotechnology · doi:10.1038/nbt.3423 · Cited by 1,292 · see citing works
De novo assembly and analysis of RNA-seq data
Robertson, G., Schein, J. E., Chiu, R., Corbett, R., Field, M. A., Jackman, S. D., Mungall, K. L., Lee, S. S., Okada, H. M., Qian, J. Q., et al. (2010) · Nature Methods · doi:10.1038/nmeth.1517 · Cited by 998 · see citing works
Multiple wheat genomes reveal global variation in modern breeding
Walkowiak, S., Gao, L., Monat, C., Haberer, G., Kassa, M. T., Brinton, J., Ramirez-Gonzalez, R. H., Kolodziej, M. C., Delorean, E., Thambugala, D., et al. (2020) · Nature · doi:10.1038/s41586-020-2961-x · Cited by 955 · see citing works
Self-citationWild emmer genome architecture and diversity elucidate wheat evolution and domestication
Avni, R., Nave, M., Barad, O., Baruch, K., Twardziok, S. O., Gundlach, H., Hale, I. L., Mascher, M., Spannagl, M., Wiebe, K., et al. (2017) · Science · doi:10.1126/science.aan0032 · Cited by 824 · see citing works
Self-citationDurum wheat genome highlights past domestication signatures and future improvement targets
Maccaferri, M., Harris, N. S., Twardziok, S. O., Pasam, R., Gundlach, H., Spannagl, M., Ormanbekova, D., Lux, T. M., Prade, V. M., Milner, S. G., et al. (2019) · Nature Genetics · doi:10.1038/s41588-019-0381-3 · Cited by 770 · see citing works
Self-citationA Kinase-START Gene Confers Temperature-Dependent Resistance to Wheat Stripe Rust
Fu, D., Uauy, C., Distelfeld, A., Blechl, A. E., Epstein, L., Chen, X., Sela, H., Fahima, T., & Dubcovsky, J. (2009) · Science · doi:10.1126/science.1166289 · Cited by 769 · see citing works
Self-citationA recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat
Moore, J. W., Herrera-Foessel, S. A., Lan, C., Schnippenkoetter, W., Ayliffe, M., Huerta‐Espino, J., Lillemo, M., Viccars, L. A., Milne, R. J., Periyannan, S. K., et al. (2015) · Nature Genetics · doi:10.1038/ng.3439 · Cited by 761 · see citing works
Analysis of Nuclear DNA content in plant cells by Flow cytometry
Dpooležel, J., Binarová, P., & Lcretti, S. (1989) · Biologia Plantarum · doi:10.1007/bf02907241 · Cited by 675 · see citing works
Barley stripe mosaic virus ‐induced gene silencing in a monocot plant
Holzberg, S., Brosio, P., Gross, C., & Pogue, G. P. (2002) · The Plant Journal · doi:10.1046/j.1365-313x.2002.01291.x · Cited by 651 · see citing works
Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly
Zhu, T., Wang, L., Rimbert, H., Rodriguez, J., Deal, K. R., Oliveira, R. D., Choulet, F., Keeble‐Gagnère, G., Tibbits, J. F. G., Rogers, J., et al. (2021) · The Plant Journal · doi:10.1111/tpj.15289 · Cited by 564 · see citing works
Evolutionary Dynamics of Plant R -Genes
Bergelson, J. M., Kreitman, M., Stahl, E. A., & Tian, D. (2001) · Science · doi:10.1126/science.1061337 · Cited by 511 · see citing works
Yahiaoui, N., Srichumpa, P., Dudler, R., & Keller, B. (2004) · The Plant Journal · doi:10.1046/j.1365-313x.2003.01977.x · Cited by 436 · see citing works
GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality
Wu, T. D., Reeder, J., Lawrence, M. F., Becker, G., & Brauer, M. J. (2016) · Methods in molecular biology · doi:10.1007/978-1-4939-3578-9_15 · Cited by 419 · see citing works
Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture
Steuernagel, B., Periyannan, S. K., Hernández‐Pinzón, I., Witek, K., Rouse, M. N., Yu, G., Hatta, A., Ayliffe, M., Bariana, H. S., Jones, J. D. G., et al. (2016) · Nature Biotechnology · doi:10.1038/nbt.3543 · Cited by 418 · see citing works
Long-read sequence assembly: a technical evaluation in barley
Mascher, M., Wicker, T., Jenkins, J. W., Plott, C., Lux, T. M., Koh, C., Ens, J., Gundlach, H., Boston, L. B., Tulpová, Z., et al. (2021) · The Plant Cell · doi:10.1093/plcell/koab077 · Cited by 392 · see citing works
Self-citationReap the crop wild relatives for breeding future crops
Bohra, A., Kilian, B., Sivasankar, S., Cáccamo, M., Mba, C., McCouch, S. R., & Varshney, R. K. (2021) · Trends in biotechnology · doi:10.1016/j.tibtech.2021.08.009 · Cited by 375 · see citing works
Resistance gene cloning from a wild crop relative by sequence capture and association genetics
Arora, S., Steuernagel, B., Gaurav, K., Chandramohan, S., Long, Y., Matny, O., Johnson, R., Enk, J. M., Periyannan, S. K., Singh, N., et al. (2019) · Nature Biotechnology · doi:10.1038/s41587-018-0007-9 · Cited by 374 · see citing works
Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family
Klymiuk, V., Yaniv, E., Huang, L., Raats, D., Fatiukha, A., Chen, S., Feng, L., Frenkel, Z., Krugman, T., Lidzbarsky, G. A., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-06138-9 · Cited by 352 · see citing works
Self-citationTørresen, O. K., Star, B., Mier, P., Andrade-Navarro, M. A., Bateman, A., Jarnot, P., Gruca, A., Grynberg, M., Kajava, A. V., Promponas, V. J., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz841 · Cited by 347 · see citing works
Cheng, Y., Cui, L., Yan, L., Jackson, A. O., Liu, Z., Han, C., Yu, J., & Li, D. (2011) · PLoS ONE · doi:10.1371/journal.pone.0026468 · Cited by 339 · see citing works
Rapid gene isolation in barley and wheat by mutant chromosome sequencing
Sánchez‐Martín, J., Steuernagel, B., Ghosh, S., Herren, G., Hurni, S., Adamski, N. M., Vrána, J., Kubaláková, M., Krattinger, S. G., Wicker, T., et al. (2016) · Genome biology · doi:10.1186/s13059-016-1082-1 · Cited by 318 · see citing works
Self-citationA modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat
Uauy, C., Paraiso, F., Colasuonno, P., Tran, R. K., Tsai, H., Berardi, S., Comai, L., & Dubcovsky, J. (2009) · BMC Plant Biology · doi:10.1186/1471-2229-9-115 · Cited by 313 · see citing works
Xing, L., Hu, P., Liu, J., Witek, K., Zhou, S. Y., Xu, J., Zhou, W., Gao, L., Huang, Z., Zhang, R., et al. (2018) · Molecular Plant · doi:10.1016/j.molp.2018.02.013 · Cited by 265 · see citing works
Self-citationPopulation genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement
Gaurav, K., Arora, S., Silva, P., Sánchez‐Martín, J., Horsnell, R. A., Gao, L., Brar, G. S., Widrig, V., Raupp, W. J., Singh, N., et al. (2021) · Nature Biotechnology · doi:10.1038/s41587-021-01058-4 · Cited by 260 · see citing works
Rairdan, G. J., Collier, S. M., Sacco, M. A., Baldwin, T. T., Boettrich, T., & Moffett, P. (2008) · The Plant Cell · doi:10.1105/tpc.107.056036 · Cited by 259 · see citing works
A rare gain of function mutation in a wheat tandem kinase confers resistance to powdery mildew
Lu, P., Guo, L., Wang, Z., Li, B., Li, J., Li, Y., Qiu, D., Shi, W., Yang, L., Wang, N., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-14294-0 · Cited by 248 · see citing works
Self-citationThe NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire
Steuernagel, B., Witek, K., Krattinger, S. G., Ramirez-Gonzalez, R. H., Schoonbeek, H., Yu, G., Baggs, E. L., Witek, A. I., Yadav, I. S., Krasileva, K. V., et al. (2020) · PLANT PHYSIOLOGY · doi:10.1104/pp.19.01273 · Cited by 234 · see citing works
Hurni, S., Brunner, S., Buchmann, G., Herren, G., Jordan, T., Krukowski, P., Wicker, T., Yahiaoui, N., Mago, R., & Keller, B. (2013) · The Plant Journal · doi:10.1111/tpj.12345 · Cited by 229 · see citing works
SMARTdenovo: a de novo assembler using long noisy reads
Liu, H., Wu, S., Li, A., & Ruan, J. (2021) · Gigabyte · doi:10.46471/gigabyte.15 · Cited by 223 · see citing works
The NB ‐ LRR gene Pm60 confers powdery mildew resistance in wheat
Zou, S., Wang, H., Li, Y., Kong, Z., & Tang, D. (2017) · New Phytologist · doi:10.1111/nph.14964 · Cited by 221 · see citing works
Self-citationRapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly
Thind, A. K., Wicker, T., Šimková, H., Fossati, D., Moullet, O., Brabant, C., Vrána, J., Doležel, J., & Krattinger, S. G. (2017) · Nature Biotechnology · doi:10.1038/nbt.3877 · Cited by 215 · see citing works
Self-citationFlow Sorting of Mitotic Chromosomes in Common Wheat (Triticum aestivum L.)
Vrána, J., Kubaláková, M., Šimková, H., Číhalíkovái, J., Lysák, M. A., & Doležel, J. (2000) · Genetics · doi:10.1093/genetics/156.4.2033 · Cited by 200 · see citing works
Self-citationPlant NLR diversity: the known unknowns of pan-NLRomes.
Barragan, A. C., & Weigel, D. (2020) · The Plant Cell · doi:10.1093/plcell/koaa002 · Cited by 185 · see citing works
Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning
Athiyannan, N., Abrouk, M., Boshoff, W. H. P., Cauet, S., Rodde, N., Kudrna, D. A., Mohammed, N., Bettgenhaeuser, J., Botha, K. S., Derman, S. S., et al. (2022) · Nature Genetics · doi:10.1038/s41588-022-01022-1 · Cited by 183 · see citing works
siRNA-Finder (si-Fi) Software for RNAi-Target Design and Off-Target Prediction
Lück, S., Kreszies, T., Marc Strickert, A., Schweizer, P., Kuhlmann, M., & Douchkov, D. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.01023 · Cited by 180 · see citing works
Sánchez‐Martín, J., Widrig, V., Herren, G., Wicker, T., Zbinden, H., Gronnier, J., Spörri, L., Praz, C. R., Heuberger, M., Kolodziej, M. C., et al. (2021) · Nature Plants · doi:10.1038/s41477-021-00869-2 · Cited by 180 · see citing works
Self-citationGenome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome
Li, L., Zhang, Z., Wang, Z., Li, N., Sha, Y., Wang, X., Ding, N., Li, Y., Zhao, J., Wu, Y., et al. (2022) · Molecular Plant · doi:10.1016/j.molp.2021.12.019 · Cited by 177 · see citing works
Self-citationZhang, W., Chen, S., Abate, Z., Nirmala, J., Rouse, M. N., & Dubcovsky, J. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1706277114 · Cited by 175 · see citing works
Distelfeld, A., Uauy, C., Fahima, T., & Dubcovsky, J. (2005) · New Phytologist · doi:10.1111/j.1469-8137.2005.01627.x · Cited by 170 · see citing works
Self-citationA rare single nucleotide variant in Pm5e confers powdery mildew resistance in common wheat
Xie, J., Guo, G., Wang, Y., Hu, T., Wang, L., Li, J., Qiu, D., Li, Y., Wu, Q., Lu, P., et al. (2020) · New Phytologist · doi:10.1111/nph.16762 · Cited by 167 · see citing works
Self-citationA CNL protein in wild emmer wheat confers powdery mildew resistance
Li, M., Dong, L., Li, B., Wang, Z., Xie, J., Qiu, D., Li, Y., Shi, W., Yang, L., Wu, Q., et al. (2020) · New Phytologist · doi:10.1111/nph.16761 · Cited by 157 · see citing works
Self-citationThe powdery mildew resistance gene Pm8 derived from rye is suppressed by its wheat ortholog Pm3
Hurni, S., Brunner, S., Stirnweis, D., Herren, G., Peditto, D., McIntosh, R. A., & Keller, B. (2014) · The Plant Journal · doi:10.1111/tpj.12593 · Cited by 150 · see citing works
Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar ‘Fielder’
Sato, K., Abe, F., Mascher, M., Haberer, G., Gundlach, H., Spannagl, M., Shirasawa, K., & Isobe, S. (2021) · DNA Research · doi:10.1093/dnares/dsab008 · Cited by 149 · see citing works
Hewitt, T., Müller, M. C., Molnár, I., Mascher, M., Holušová, K., Šimková, H., Kunz, L., Zhang, J., Li, J., Bhatt, D., et al. (2020) · New Phytologist · doi:10.1111/nph.17075 · Cited by 130 · see citing works
Self-citationZhang, M., Zhang, Y., Scheuring, C. F., Wu, C. C., Dong, J. J., & Zhang, H. (2012) · Nature Protocols · doi:10.1038/nprot.2011.455 · Cited by 129 · see citing works
Self-citationEvolutionary divergence of the rye Pm17 and Pm8 resistance genes reveals ancient diversity
Singh, S., Hurni, S., Ruinelli, M., Brunner, S., Sánchez‐Martín, J., Krukowski, P., Peditto, D., Buchmann, G., Zbinden, H., & Keller, B. (2018) · Plant Molecular Biology · doi:10.1007/s11103-018-0780-3 · Cited by 126 · see citing works
Introgressing the Aegilops tauschii genome into wheat as a basis for cereal improvement
Zhou, Y., Bai, S.-L., Li, H., Sun, G.-L., Zhang, D., Ma, F., Zhao, X., Nie, F., Li, J., Chen, L., et al. (2021) · Nature Plants · doi:10.1038/s41477-021-00934-w · Cited by 121 · see citing works
An unusual tandem kinase fusion protein confers leaf rust resistance in wheat
Wang, Y., Abrouk, M., Gourdoupis, S., Koo, D., Karafiátová, M., Molnár, I., Holušová, K., Doležel, J., Athiyannan, N., Cavalet-Giorsa, E., et al. (2023) · Nature Genetics · doi:10.1038/s41588-023-01401-2 · Cited by 119 · see citing works
Self-citationYaniv, E., Raats, D., Ronin, Y. I., Korol, A. B., Grama, A., Bariana, H. S., Dubcovsky, J., Schulman, A. H., & Fahima, T. (2015) · Molecular Breeding · doi:10.1007/s11032-015-0238-0 · Cited by 118 · see citing works
Self-citationRapid evolution in plant–microbe interactions – a molecular genomics perspective
Frantzeskakis, L., Pietro, A. D., Rep, M., Schirawski, J., Wu, C., & Panstruga, R. (2019) · New Phytologist · doi:10.1111/nph.15966 · Cited by 115 · see citing works
Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62
Yu, G., Matny, O., Champouret, N., Steuernagel, B., Moscou, M., Hernández‐Pinzón, I., Green, P., Hayta, Ş., Smedley, M. A., Harwood, W., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-29132-8 · Cited by 112 · see citing works
Self-citationFISHIS: Fluorescence In Situ Hybridization in Suspension and Chromosome Flow Sorting Made Easy
Giorgi, D., Farina, A., Grosso, V., Gennaro, A., Ceoloni, C., & Lucretti, S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057994 · Cited by 101 · see citing works
Improved Genome Sequence of Wild Emmer Wheat Zavitan with the Aid of Optical Maps
Zhu, T., Wang, L., Rodriguez, J., Deal, K. R., Avni, R., Distelfeld, A., McGuire, P. E., Dvořák, J., & Luo, M. (2019) · G3 Genes Genomes Genetics · doi:10.1534/g3.118.200902 · Cited by 97 · see citing works
The impact of contact tracing and household bubbles on deconfinement strategies for COVID-19
Willem, L., Abrams, S., Petrof, O., Coletti, P., Kuylen, E., Libin, P., Møgelmose, S., Wambua, J., Herzog, S. A., Faes, C., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-21747-7 · Cited by 93 · see citing works
A giant NLR gene confers broad-spectrum resistance to Phytophthora sojae in soybean
Wang, W., Chen, L., Fengler, K. A., Bolar, J., Llaca, V., Wang, X., Clark, C. B., Fleury, T. J., Myrvold, J., Oneal, D., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-26554-8 · Cited by 82 · see citing works
Chromosome Sorting in Tetraploid Wheat and Its Potential for Genome Analysis
Kubaláková, M., Kovářová, P., Suchánková, P., Číhalíková, J., Bartoš, J., Lucretti, S., Watanabe, N., Kianian, S. F., & Doležel, J. (2005) · Genetics · doi:10.1534/genetics.104.039180 · Cited by 81 · see citing works
Self-citationEvolution and Adaptation of Wild Emmer Wheat Populations to Biotic and Abiotic Stresses
Huang, L., Raats, D., Sela, H., Klymiuk, V., Lidzbarsky, G. A., Feng, L., Krugman, T., & Fahima, T. (2016) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-080614-120254 · Cited by 81 · see citing works
Self-citationWheat leaf rust resistance gene Lr13 is a specific Ne2 allele for hybrid necrosis
Hewitt, T., Zhang, J., Huang, L., Upadhyaya, N. M., Li, J., Park, R., Hoxha, S., McIntosh, R. A., Lagudah, E. S., & Zhang, P. (2021) · Molecular Plant · doi:10.1016/j.molp.2021.05.010 · Cited by 80 · see citing works
Aury, J., Engelen, S., Istace, B., Monat, C., Lasserre‐Zuber, P., Belser, C., Cruaud, C., Rimbert, H., Leroy, P., Arribat, S., et al. (2022) · GigaScience · doi:10.1093/gigascience/giac034 · Cited by 80 · see citing works
The wheat stem rust resistance gene Sr43 encodes an unusual protein kinase
Yu, G., Matny, O., Gourdoupis, S., Rayapuram, N., Aljedaani, F., Wang, Y. L., Nürnberger, T., Johnson, R., Crean, E. E., Saur, I. M. L., et al. (2023) · Nature Genetics · doi:10.1038/s41588-023-01402-1 · Cited by 80 · see citing works
Self-citationMolnár, I., Vrána, J., Burešová, V., Cápal, P., Farkas, A., Darkó, É., Cseh, A., Kubaláková, M., Molnár‐Láng, M., & Doležel, J. (2016) · The Plant Journal · doi:10.1111/tpj.13266 · Cited by 72 · see citing works
Self-citationYan, X., Li, M., Zhang, P., Yin, G., Zhang, H., Gebrewahid, T. W., Zhang, J., Dong, L., Liu, D., Liu, Z., et al. (2021) · Molecular Plant · doi:10.1016/j.molp.2021.05.009 · Cited by 69 · see citing works
Zhu, S., Liu, C., Gong, S., Chen, Z., Chen, R., Liu, T., Liu, R., Du, H., Guo, R. H., Li, G., et al. (2022) · Plant Communications · doi:10.1016/j.xplc.2022.100472 · Cited by 67 · see citing works
Wheat Disease Resistance Genes and Their Diversification Through Integrated Domain Fusions
Andersen, E. J., Nepal, M., Purintun, J. M., Nelson, D., Mermigka, G., & Sarris, P. F. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00898 · Cited by 63 · see citing works
Mapping of repeated DNA sequences in plant chromosomes by PRINS and C-PRINS
Kubaláková, M., Macas, J., & Doležel, J. (1997) · Theoretical and Applied Genetics · doi:10.1007/s001220050475 · Cited by 60 · see citing works
Self-citationCopy number variation of TdDof controls solid-stemmed architecture in wheat
Nilsen, K. T., Walkowiak, S., Xiang, D., Gao, P., Quilichini, T. D., Willick, I. R., Byrns, B., N’Diaye, A., Ens, J., Wiebe, K., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2009418117 · Cited by 57 · see citing works
Self-citationXie, W., Ben‐David, R., Zeng, B., Distelfeld, A., Röder, M. S., Dinoor, A., & Fahima, T. (2011) · Theoretical and Applied Genetics · doi:10.1007/s00122-011-1756-8 · Cited by 49 · see citing works
Self-citationZhang, J., Zhang, P., Dodds, P. N., & Lagudah, E. S. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.00678 · Cited by 47 · see citing works
Molnár, I., Kubaláková, M., Šimková, H., Farkas, A., Cseh, A., Megyeri, M., Vrána, J., Molnár‐Láng, M., & Doležel, J. (2014) · Theoretical and Applied Genetics · doi:10.1007/s00122-014-2282-2 · Cited by 35 · see citing works
Self-citationGolzar, H., Shankar, M., & D’Antuono, M. F. (2016) · Australasian Plant Pathology · doi:10.1007/s13313-016-0420-9 · Cited by 35 · see citing works
Applications of Genetic and Genomic Research in Cereals
(2019) · Elsevier eBooks · doi:10.1016/c2016-0-04192-x · Cited by 33 · see citing works
Wu, Q., Zhao, F., Chen, Y., Zhang, P., Zhang, H., Guo, G., Xie, J., Dong, L., Lu, P., Li, M., et al. (2021) · Plant Biotechnology Journal · doi:10.1111/pbi.13609 · Cited by 33 · see citing works
Self-citationDurum Wheat as a Bridge Between Wild Emmer Wheat Genetic Resources and Bread Wheat
Klymiuk, V., Fatiukha, A., Huang, L., Wei, Z.-Z., Kis-Papo, T., Saranga, Y., Krugman, T., & Fahima, T. (2019) · Elsevier eBooks · doi:10.1016/b978-0-08-102163-7.00010-7 · Cited by 32 · see citing works
Self-citationLi, Y., Roychowdhury, R., Govta, L., Jaiwar, S., Wei, Z.-Z., Shams, I., & Fahima, T. (2023) · Phytopathology · doi:10.1094/phyto-07-22-0271-fi · Cited by 31 · see citing works
Self-citationWu, Q., Chen, Y., Li, B., Li, J., Zhang, P., Xie, J., Zhang, H., Guo, G., Lu, P., Li, M., et al. (2022) · Journal of genetics and genomics/Journal of Genetics and Genomics · doi:10.1016/j.jgg.2022.01.010 · Cited by 30 · see citing works
Self-citationZhao, F., Li, Y., Yang, B., Yuan, H., Jin, C., Zhou, L., Pei, H., Zhao, L., Li, Y., Zhou, Y., et al. (2019) · The Crop Journal · doi:10.1016/j.cj.2019.09.007 · Cited by 29 · see citing works
Self-citationElevated mutation and selection in wild emmer wheat in response to 28 years of global warming
Fu, Y., Peterson, G. W., Horbach, C., Konkin, D. J. F., Beiles, A., & Nevo, E. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1909564116 · Cited by 27 · see citing works
Gill, B. K., Klindworth, D. L., Rouse, M. N., Zhang, J., Zhang, Q., Sharma, J. S., Chu, C., Long, Y., Chao, S., Olivera, P. D., et al. (2021) · The Plant Journal · doi:10.1111/tpj.15263 · Cited by 27 · see citing works
Integrative genomics viewer (IGV): Visualizing alignments and variants
Robinson, P. N., & jtel, T. Z. (2017) · Chapman & Hall/CRC eBooks · doi:10.1201/9781315154770-17 · Cited by 26 · see citing works
Ben‐David, R., Parks, R., Dinoor, A., Kosman, E., Wicker, T., Keller, B., & Cowger, C. (2016) · Phytopathology · doi:10.1094/phyto-07-15-0177-r · Cited by 25 · see citing works
Self-citationDong, L., Huo, N., Wang, Y., Deal, K. R., Wang, D., Hu, T., Dvořák, J., Anderson, O. D., Luo, M., & Gu, Y. (2016) · The Plant Journal · doi:10.1111/tpj.13214 · Cited by 25 · see citing works
Zhu, K., Li, M., Wu, H., Zhang, D., Dong, L., Wu, Q., Chen, Y., Xie, J., Lu, P., Guo, G., et al. (2022) · Theoretical and Applied Genetics · doi:10.1007/s00122-021-04027-2 · Cited by 24 · see citing works
Li, Y., Wei, Z.-Z., Fatiukha, A., Jaiwar, S., Wang, H., Hasan, S., Liu, Z., Sela, H., Krugman, T., & Fahima, T. (2021) · Theoretical and Applied Genetics · doi:10.1007/s00122-021-03858-3 · Cited by 22 · see citing works
Self-citationLocal Duplication of TIR-NBS-LRR Gene Marks Clubroot Resistance in Brassica napus cv. Tosca
Kopec, P. M., Mikołajczyk, K., Jajor, E., Perek, A., Nowakowska, J., Obermeier, C., Chawla, H. S., Korbas, M., Bartkowiak‐Broda, I., & Karlowski, W. M. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.639631 · Cited by 21 · see citing works
Self-citationComputational Exome and Genome Analysis
Robinson, P. N., Piro, R. M., & Jäger, M. (2017) · Chapman & Hall/CRC eBooks · doi:10.1201/9781315154770 · Cited by 20 · see citing works
Resistance to powdery mildew in wild emmer (Triticum dicoccoides Körn.)
Gerechter‐Amitai, Z. K., & van Silfhout, C. H. (1984) · Euphytica · doi:10.1007/bf00021122 · Cited by 18 · see citing works
Cleaved Amplified Polymorphic Sequences (CAPS) markers in plant biology
Börner, A., & Хлесткина, Е. К. (2015) · Biologia Plantarum · doi:10.1007/s10535-015-0516-z · Cited by 16 · see citing works
The Institute of Evolution Wild Cereal Gene Bank at the University of Haifa
Krugman, T., Nevo, E., Beharav, A., Sela, H., & Fahima, T. (2018) · Israel Journal of Plant Sciences · doi:10.1163/22238980-00001065 · Cited by 14 · see citing works
Self-citationWei, Z.-Z., Klymiuk, V., Bocharova, V., Pozniak, C. J., & Fahima, T. (2020) · Pathogens · doi:10.3390/pathogens9060418 · Cited by 11 · see citing works
Self-citationApplication of CAPS markers for genomic studies in wild emmer wheat
Raats, D., Yaniv, E., Distelfeld, A., Ben‐David, R., SHANIR, J. V., Bocharova, V., Schulman, A. H., & Fahima, T. (2014) · Cited by 5 · see citing works
Self-citation
Flagged first, then by citations
4 of the 102 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Mishra, S., Roychowdhury, R., Ray, S., Hada, A., Kumar, A., Sarker, U., Aftab, T., & Das, R. (2024) · Plant Stress · doi:10.1016/j.stress.2024.100427 · Cited by 195 · see citing works
Self-citationPlant pangenomes for crop improvement, biodiversity and evolution
Schreiber, M., Jayakodi, M., Stein, N., & Mascher, M. (2024) · Nature Reviews Genetics · doi:10.1038/s41576-024-00691-4 · Cited by 158 · see citing works
Fighting wheat powdery mildew: from genes to fields
Wang, B., Meng, T., Xiao, B., Yu, T., Yue, T., Jin, Y., & Ma, P. (2023) · Theoretical and Applied Genetics · doi:10.1007/s00122-023-04445-4 · Cited by 94 · see citing works
Wheat powdery mildew resistance gene Pm13 encodes a mixed lineage kinase domain-like protein
Li, H., Men, W., Ma, C., Liu, Q., Dong, Z., Tian, X., Wang, C., Liu, C., Gill, H. S., Ma, P., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-46814-7 · Cited by 67 · see citing works
Li, M., Zhang, H., Xiao, H., Zhu, K., Shi, W., Zhang, D., Wang, Y., Yang, L., Wu, Q., Xie, J., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-47497-w · Cited by 64 · see citing works
Self-citationBreeding Wheat for Powdery Mildew Resistance: Genetic Resources and Methodologies—A Review
Bapela, T., Shimelis, H., Terefe, T., Bourras, S., Sánchez‐Martín, J., Douchkov, D., Desiderio, F., & Tsilo, T. J. (2023) · Agronomy · doi:10.3390/agronomy13041173 · Cited by 45 · see citing works
Fine mapping of Pm71, a novel powdery mildew resistance gene from emmer wheat
Zhang, J., Yang, H., Han, G., Xu, H., Liu, R., Yu, N., Han, R., Li, Y., Li, J., Dai, Y., et al. (2025) · The Crop Journal · doi:10.1016/j.cj.2025.01.003 · Cited by 39 · see citing works
Self-citationA head-to-head NLR gene pair from wild emmer confers stripe rust resistance in wheat
Hu, Y., Li, M., Li, Y., Du, L., Xie, R., Ni, F., Xia, C., Wang, K., Huang, Y., Xu, B., et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02207-0 · Cited by 39 · see citing works
Self-citationHan, G., Liu, H., Zhu, S., Gu, T., Cao, L., Yan, H., Jin, Y., Wang, J., Liu, S., Zhou, Y., et al. (2023) · Plant Biotechnology Journal · doi:10.1111/pbi.14165 · Cited by 38 · see citing works
Ma, C., Tian, X., Dong, Z., Li, H., Chen, X., Liu, W., Yin, G., Ma, S., Zhang, L., Cao, A., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-52670-2 · Cited by 37 · see citing works
An atypical NLR pair TdCNL1/TdCNL5 from wild emmer confers powdery mildew resistance in wheat
Zhu, K., Li, M., Dong, L., Zhang, H., Zhang, D., Lu, P., Wu, Q., Xie, J., Chen, Y., Guo, G., et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02208-z · Cited by 35 · see citing works
Self-citationWheat genomics: genomes, pangenomes, and beyond
Tiwari, V. K., Saripalli, G., Sharma, P. K., & Poland, J. (2024) · Trends in Genetics · doi:10.1016/j.tig.2024.07.004 · Cited by 34 · see citing works
Verma, K., Kumari, K., Rawat, M., Devi, K., & Joshi, R. (2025) · Journal of soil science and plant nutrition · doi:10.1007/s42729-025-02443-7 · Cited by 34 · see citing works
Coordinated function of paired NLRs confers Yr84-mediated stripe rust resistance in wheat
Klymiuk, V., Wiebe, K., Chawla, H. S., Ens, J., Subramaniam, R., & Pozniak, C. J. (2025) · Nature Genetics · doi:10.1038/s41588-025-02203-4 · Cited by 34 · see citing works
Self-citationMmbando, G. S. (2024) · Plant Stress · doi:10.1016/j.stress.2024.100366 · Cited by 31 · see citing works
The wheat NLR pair RXL /Pm5e confers resistance to powdery mildew
Guo, G., Bai, K., Hou, Y., Gong, Z. H., Zhang, H., Wu, Q., Lu, P., Li, M., Dong, L., Xie, J., et al. (2025) · Plant Biotechnology Journal · doi:10.1111/pbi.14584 · Cited by 28 · see citing works
Accelerating wheat improvement through trait characterization: advances and perspectives
Roychowdhury, R., Ghatak, A., Kumar, M., Samantara, K., Weckwerth, W., & Chaturvedi, P. (2024) · Physiologia Plantarum · doi:10.1111/ppl.14544 · Cited by 22 · see citing works
Self-citationEvaluation and genetic dissection of the powdery mildew resistance in 558 wheat accessions
Jin, Y., Han, G., Zhang, W., Bu, B., Zhao, Y., Wang, J., Liu, R., Yang, H. G., Xu, H., & Ma, P. (2024) · New Crops · doi:10.1016/j.ncrops.2024.100018 · Cited by 22 · see citing works
The Spectrum of Diverse Disease-Resistance Genes Cloned and Characterized in the Triticeae Tribe
Li, Y., Govta, L., Sung, Y., Coaker, G., & Fahima, T. (2025) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-121323-031121 · Cited by 18 · see citing works
Self-citationAn NLR pair in the Pm68 locus confers powdery mildew resistance in durum and common wheat
He, H., Tang, Q., Zhang, Q., Zhu, S., Lv, S., Bao, Y., Liang, J., Wang, J., Wang, J., Xu, H., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64048-z · Cited by 19 · see citing works
Han, G., Wang, J., Yan, H., Gu, T., Cao, L., Liu, S., Li, X., Zhou, Y., Fan, J., Shi, Z., et al. (2023) · The Crop Journal · doi:10.1016/j.cj.2023.09.003 · Cited by 17 · see citing works
Fine mapping of the powdery mildew resistance gene PmXQ-0508 in bread wheat
Qian, Z., Han, G., Yu, N., Liu, C., Han, R., Jameson, P. E., Wang, J., Zhao, Y., Xiao, B., Liu, R., et al. (2024) · The Crop Journal · doi:10.1016/j.cj.2024.05.016 · Cited by 17 · see citing works
Gong, B., Chen, L., Zhang, H., Zhu, W., Xu, L., Cheng, Y., Wang, Y., Zeng, J., Fan, X., Sha, L., et al. (2024) · Theoretical and Applied Genetics · doi:10.1007/s00122-023-04525-5 · Cited by 15 · see citing works
Pm37 as a susceptible Sr22 allele confers resistance to wheat powdery mildew and leaf rust
Jin, Y., Li, W., Li, Y., Li, D., Yan, H., Chen, S., Han, G., Xiao, B., Li, B., Lu, P., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-69717-1 · Cited by 14 · see citing works
Self-citationHan, G., Wang, J., Yan, H., Cao, L., Liu, S., Xiu-quan, L. I., Zhou, Y., Liu, W., Tian-tian, G. U., Shi, Z., et al. (2023) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2023.10.004 · Cited by 14 · see citing works
Zhang, H., Li, M., Wang, G., Zhu, K., Guo, G., Fu, H., Hu, C., Chu, Z., Hu, J., Wu, Q., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64049-y · Cited by 13 · see citing works
Self-citationWei, W., Liu, N., Zhang, S., Zhang, J., Pan, W. X., Xie, X., Yang, Z., Sun, J., Ma, J., Hu, Z., et al. (2024) · The Crop Journal · doi:10.1016/j.cj.2024.01.015 · Cited by 13 · see citing works
Self-citationHe, H., Wang, J., Liang, J., Zhang, Q., Xue, M., Chen, Z., Tang, Q., Chen, X., Zhu, S., & Wang, Y. (2024) · Plant Communications · doi:10.1016/j.xplc.2024.101070 · Cited by 13 · see citing works
Warsi, Z. I., Khatoon, K., Singh, P., & Rahman, L. U. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1238838 · Cited by 12 · see citing works
Effect of Powdery Mildew on the Photosynthetic Parameters and Leaf Microstructure of Melon
Tian, M., Yu, R., Yang, W., Guo, S., Liu, S., Du, H., Liang, J., & Zhang, X. (2024) · Agriculture · doi:10.3390/agriculture14060886 · Cited by 12 · see citing works
Kunz, L., Jigisha, J., Menardo, F., Sotiropoulos, A. G., Zbinden, H., Zou, S., Tang, D., Hückelhoven, R., Keller, B., & Müller, M. C. (2025) · PLoS Pathogens · doi:10.1371/journal.ppat.1012799 · Cited by 12 · see citing works
Wheat genomics frontiers for gene discovery and breeding applications
Waqas, M., Rasheed, A., & Peng, J. (2025) · WheatOmics · doi:10.1007/s44412-025-00002-6 · Cited by 11 · see citing works
Song, R., Zhang, D., Jingxin, Y., Cheng, Y., Song, X., Zhao, W., Xia, M., Zhang, Y., Wei, L., Cheng, M., et al. (2024) · The Crop Journal · doi:10.1016/j.cj.2024.07.010 · Cited by 11 · see citing works
Self-citationTwo complementary NLRs from wild emmer wheat confer powdery mildew resistance
Yang, Z., Liu, N., Xie, X., Wei, W., Bai, Y., Sun, J., Pan, W. X., Yang, J., Wang, W., Xie, X., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64052-3 · Cited by 11 · see citing works
Self-citationCao, Q., Zhu, Z., Xu, D., Wu, J., Xu, X., Dong, Y., Bian, Y., Ding, F., Zhao, D., Tu, Y., et al. (2024) · The Crop Journal · doi:10.1016/j.cj.2024.05.011 · Cited by 10 · see citing works
Wu, D., Wang, F., Chen, L., Mao, Y., Li, Y., Zhu, W., Xu, L., Zhang, Y., Wang, Y., Zeng, J., et al. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05703-3 · Cited by 10 · see citing works
Self-citationIslam, B. U., Mir, S., Dar, M. S., Khan, G. H., Shikari, A. B., Sofi, N. U. R., Mohiddin, F. A., Ahangar, M. A., Jehangir, I. A., Kumar, S., V, et al. (2023) · Plants · doi:10.3390/plants12183239 · Cited by 9 · see citing works
Gong, B., Gao, J. Q., Xie, Y., Zhang, H., Zhu, W., Xu, L., Cheng, Y., Wang, Y., Zeng, J., Fan, X., et al. (2024) · Theoretical and Applied Genetics · doi:10.1007/s00122-024-04756-0 · Cited by 9 · see citing works
Self-citationEvaluation and identification of powdery mildew-resistant genes in 137 wheat relatives
Wang, J., Xu, H., Qie, Y., Han, R., Sun, X., Zhao, Y., Xiao, B., Qian, Z., Huang, X., Liu, R., et al. (2024) · Frontiers in Genetics · doi:10.3389/fgene.2024.1342239 · Cited by 9 · see citing works
Wu, D., Zhao, X., Xie, Y., Li, L., Li, Y., Zhu, W., Xu, L., Wang, Y., Zeng, J., Cheng, Y., et al. (2024) · Plant Disease · doi:10.1094/pdis-12-23-2799-re · Cited by 9 · see citing works
Self-citationWei, Y., Zhang, T., Jin, Y., Li, W., Kong, L., Liu, X., Xing, L., Cao, A., & Zhang, R. (2024) · Frontiers in Plant Science · doi:10.3389/fpls.2024.1401525 · Cited by 9 · see citing works
Wang, T., Li, G., Jiang, C., Zhou, Y., Yang, E., Li, J., Zhang, P., Dundas, I., & Yang, Z. (2023) · Plants · doi:10.3390/plants12223885 · Cited by 8 · see citing works
Are cereal grasses a single genetic system?
Mascher, M., Marone, M. P., Schreiber, M., & Stein, N. (2024) · Nature Plants · doi:10.1038/s41477-024-01674-3 · Cited by 8 · see citing works
Hou, F., Chen, H., Zhang, T., Jin, Y., Kong, L., Liu, X., Xing, L., Cao, A., & Zhang, R. (2024) · Plant Disease · doi:10.1094/pdis-11-23-2495-re · Cited by 7 · see citing works
Qian, Z., Liu, R., Liu, X., Qie, Y., Wang, J., Yin, Y., Xin, Q., Yu, N., Zhang, J., Li, Y., et al. (2024) · Frontiers in Plant Science · doi:10.3389/fpls.2024.1387427 · Cited by 7 · see citing works
Self-citationGenome‐wide association studies on resistance to powdery mildew in cultivated emmer wheat
Lhamo, D., Li, G., Song, G., Li, X., Sen, T. Z., Gu, Y., Xu, X., & Xu, S. S. (2024) · The Plant Genome · doi:10.1002/tpg2.20493 · Cited by 7 · see citing works
Molecular identification of a Pm4 allele conferring powdery mildew resistance in durum wheat DR88
Han, G., Xing, L., Gu, T., Jin, Y., Shi, F., Yan, H., Zhuo, S., Shi, Z., Wang, J., Zhou, Y., et al. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05884-x · Cited by 7 · see citing works
Self-citationA Unique Expression Profile Responding to Powdery Mildew in Wild Emmer Wheat D430
Dai, Y., Yu, N., Xu, H., Liu, S., Zhang, J., Liu, R., Li, J., Li, Y., Xiao, B., Pan, G., et al. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms26010242 · Cited by 6 · see citing works
Self-citationThe diversity of cloned wheat powdery mildew resistance genes and the resistance mechanisms
Saqlain, M., Chen, T., Ma, J., Nosherwan, M., Yang, Z., Wu, D., Zhou, Y., Kang, H., & Li, Y. (2026) · WheatOmics · doi:10.1007/s44412-026-00008-8 · Cited by 6 · see citing works
Self-citationValentini, G., Hurtado‐Gonzales, O. P., Xavier, L. F. S., He, R., Gill, U., Song, Q., & Pastor-Corrales, M. A. (2025) · Theoretical and Applied Genetics · doi:10.1007/s00122-025-04856-5 · Cited by 6 · see citing works
Wan, W., Zhao, R., Zhao, P., Tang, Q., Lv, G., Chen, T., Wang, L., Zang, S., Wu, R., Wang, Z., et al. (2026) · Engineering · doi:10.1016/j.eng.2026.02.027 · Cited by 5 · see citing works
Self-citationJan, F., Rathore, M., Saini, D. K., Singh, A., Qureshi, N., Aggarwal, N., Bashir, M., Shakeel, M., Gupta, V., Kumar, S., et al. (2026) · The Plant Genome · doi:10.1002/tpg2.70174 · Cited by 5 · see citing works
Genome‐wide association study for powdery mildew resistance in CIMMYT 's spring wheat germplasm
Bhadana, D., Kaur, P., Kaur, R., Ravat, V. K., Ashutosh, A., Kumar, R., & Vasistha, N. K. (2024) · Plant Pathology · doi:10.1111/ppa.14031 · Cited by 5 · see citing works
Progress and innovations of gene cloning in wheat and its close relatives
Korchanová, Z., Milovanov, A. V., Švec, M., Doležel, J., Bartoš, J., & Valárik, M. (2025) · Theoretical and Applied Genetics · doi:10.1007/s00122-025-04897-w · Cited by 5 · see citing works
Self-citationCharacterization and mapping of a rust resistance locus in the common bean landrace G19833
Valentini, G., Pastor-Corrales, M. A., Hurtado‐Gonzales, O. P., Xavier, L. F. S., Gill, U., & Song, Q. (2025) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkaf168 · Cited by 4 · see citing works
Gong, B., Zhang, H., Lu, Y., Chen, L., Zhu, W., Xu, L., Wu, D., Cheng, Y., Wang, Y., Zeng, J., et al. (2025) · Plant Cell & Environment · doi:10.1111/pce.70278 · Cited by 4 · see citing works
Self-citationRivera-Burgos, L. A., VanGessel, C. J., Guedira, M., Smith, J. M., Marshall, D., Jin, Y., Rouse, M. N., & Brown‐Guedira, G. (2024) · Theoretical and Applied Genetics · doi:10.1007/s00122-024-04702-0 · Cited by 4 · see citing works
Fine mapping of a powdery mildew resistance gene PmLF540 from wild emmer wheat
Liu, R., Xu, H., Yu, N., Zhang, J., Li, Y., Li, J., Dai, Y., Xiao, B., Pan, G., Li, D., et al. (2025) · Theoretical and Applied Genetics · doi:10.1007/s00122-025-04954-4 · Cited by 4 · see citing works
Self-citationLiu, X., Yang, C., Wu, S., Dong, H., Wang, G., Han, X., Fan, B., Shang, Y., Dang, C., Xie, C., et al. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25126603 · Cited by 4 · see citing works
Xing, L., Gu, T., Shi, F., Jin, Y., Fu, X., Han, G., Xu, H., Zhou, Y., Liu, W., He, M., et al. (2024) · Plant Disease · doi:10.1094/pdis-02-24-0297-re · Cited by 3 · see citing works
Jin, Y., Yu, Z., Su, F., Fang, T., Liu, S., Xu, H., Wang, J., Xiao, B., Han, G., Li, H., et al. (2024) · Plant Disease · doi:10.1094/pdis-08-23-1667-re · Cited by 3 · see citing works
Citrus PR4A is involved in the defense responses against Xanthomonas citri subsp. citri.
Hao, C., Han, J., Yan, P., Ouyang, J., Sheng, L., Long, G., Deng, Z., Cao, Y., & Ma, X. (2024) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2024.11.011 · Cited by 3 · see citing works
Genetic Dissection of the Powdery Mildew Resistance in a Cultivated Emmer Wheat Accession
Liu, R., Jin, Y., Yu, N., Xu, H., Sun, X., Wang, J., Liu, X., Zhang, J., Li, J., Li, Y., et al. (2025) · Agronomy · doi:10.3390/agronomy15040980 · Cited by 3 · see citing works
Self-citationXiao, B., Qie, Y., Jin, Y., Yu, N., Sun, N., Liu, W., Wang, X., Wang, J., Qian, Z., Zhao, Y., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-64998-2 · Cited by 3 · see citing works
Fu, B., Lin, Z., Yan, L., Zhang, Q., Liu, C., Cai, J., Guo, W., Liu, Y., Zhai, W., Gong, S., et al. (2025) · Frontiers in Plant Science · doi:10.3389/fpls.2024.1489013 · Cited by 3 · see citing works
Zhao, Y., Han, G., Qie, Y., Song, J., Zi, Y., Xiao, B., Wang, J., Qian, Z., Huang, X., Liu, R., et al. (2024) · Molecular Breeding · doi:10.1007/s11032-024-01467-8 · Cited by 2 · see citing works
Gao, H., Zhuo, S., Hao, J., Bi, J., Zhao, H., Li, Y., Liu, J., & Kong, D. (2025) · BMC Plant Biology · doi:10.1186/s12870-025-07222-1 · Cited by 2 · see citing works
Self-citationPan-NLRome of Spinacia facilitates the rapid discovery of downy mildew resistance genes
She, H., Wang, H., Xu, Z., Zhang, H., & Liu, Z. (2026) · Frontiers in Plant Science · doi:10.3389/fpls.2026.1766206 · Cited by 2 · see citing works
The I gene defines a dynamic NLR cluster conferring broad potyvirus resistance in common bean
Alvarez-Diaz, J. C., Soler‐Garzón, A., Teano, G., Verdenaud, M., roudaut, A., Klopp, C., Prejean, M.-V., Pflieger, S., Porch, T. G., Desbiez, C., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-73550-x · Cited by 2 · see citing works
Kumar, R. R., Niraj, R. R. K., Goswami, S., Thimmegowda, V., MISHRA, G. P., Mishra, D. C., Rai, G. K., Kumar, S. N., Chinnusamy, V., Tyagi, A., et al. (2024) · 3 Biotech · doi:10.1007/s13205-024-03989-6 · Cited by 2 · see citing works
Chen, X., Wang, Y., Fan, J., Fa, J., Tan, Q., Liu, G., Zhang, H., & Wang, Y. (2024) · Agronomy · doi:10.3390/agronomy14040667 · Cited by 2 · see citing works
Fine mapping of two recessive powdery mildew resistance genes from Aegilops tauschii accession CIae8
Tang, X., Dai, F., Hao, Y., Chen, Y., Zhang, J., Wang, G., Li, X., Peng, X., Xu, T., Yuan, C., et al. (2023) · Theoretical and Applied Genetics · doi:10.1007/s00122-023-04454-3 · Cited by 2 · see citing works
Li, Y., Yu, N., Xu, H., Geng, L., Qie, Y., Liu, X., Sun, X., Wang, J., Xin, Q., Zhang, J., et al. (2025) · Plant Disease · doi:10.1094/pdis-02-25-0366-re · Cited by 1 · see citing works
Self-citationJiang, Z., Hu, W., Jiang, W., Zhang, Y., Lu, C., Liu, D., & Gao, D. (2026) · Plant Pathology · doi:10.1111/ppa.70109 · Cited by 1 · see citing works
Self-citationGuan, Y., Wang, K., Wang, Y., Zhao, J., & Hu, H. (2026) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2026.07.017 · Cited by 1 · see citing works
Zhang, J., Jie, Y., Yan, L., Wang, M., Dong, Y., Pang, Y., Ren, C., Song, J., Chen, X., Li, X., et al. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05433-6 · Cited by 1 · see citing works
Self-citationZhao, Y., Ma, F., Wang, J., Han, M., Liu, X., Shafique, A., Xiao, L., Wang, X., Xu, J., Wang, X., et al. (2025) · Theoretical and Applied Genetics · doi:10.1007/s00122-025-04921-z · Cited by 1 · see citing works
Self-citationKadam, S. K., Youn, J.-S., & Kim, J. (2026) · BMC Plant Biology · doi:10.1186/s12870-025-08093-2 · Cited by 1 · see citing works
Wheat NLR Genes: Genomic Diversity, Functional Mechanisms, and Advances in Resistance Gene Discovery
Zamir, H., Shah, D. A., Ahmad, H., Rauf, F., Khan, S., Jamali, Z. H., & Korai, S. K. (2026) · Journal of Phytopathology · doi:10.1111/jph.70331 · Cited by 1 · see citing works
Sheng, W., Chen, L., Ma, J., Saqlain, M., Latif, M. H., Zhang, K., Yang, J., Nosherwan, M., Zhu, W., Xu, L., et al. (2026) · Pathogens · doi:10.3390/pathogens15060653 · Cited by 1 · see citing works
Self-citationHuang, X., Jin, X., Ren, X., Wu, W., Ji, W., Feng, L., Jiang, B., Hao, M., Ning, S., Yuan, Z., et al. (2023) · Pathogens · doi:10.3390/pathogens12020241 · Cited by 1 · see citing works
Self-citationChen, W., Li, J., Fan, L., Qi, D., Zhang, H., Hao, Y., Liang, M., Bo, C., Sun, S., Wang, X., et al. (2024) · Agronomy · doi:10.3390/agronomy14040744
Allelic variation and effects of earliness per se (Eps) genes in wheat cultivars of Pakistan
Iltaf, B., Qayyum, H., Suleman, H. M., Raza, A., ur-Rehman, S., Khalid, H., Abbasi, K., Tanvir, K., Mukhtar, M., Zulfiqar, S., et al. (2024) · International Journal of Applied and Experimental Biology · doi:10.56612/ijaaeb.v1i1.101
Kaur, R., Tyagi, V., Dhariwal, R., Sheikh, I., Dhaliwal, H. S., Sivasamy, M., Sivakumar, T., Kumar, S., Ravat, V. K., & Vasistha, N. K. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.04.12.648525
Liu, X., Wang, C., Wang, Y., Wu, S., Dong, H., Shang, Y., Dang, C., Xie, C., Fan, B., Tong, Y., et al. (2025) · Plants · doi:10.3390/plants14172652
Li, D., Li, Y., Yu, N., Geng, L., Qie, Y., Xu, H., Wang, B., Guo, J., Li, J., Sun, N., et al. (2025) · BMC Plant Biology · doi:10.1186/s12870-025-07800-3
Self-citationSu, Z., Takenaka, S., Kakitani, M., Nitta, M., Gorafi, Y. S. A., & Nasuda, S. (2025) · BMC Plant Biology · doi:10.1186/s12870-025-07944-2
Shang, L., Li, S. G., Li, Y., Wang, F., Chen, S., Zeng, K., Yanling, H., Li, Y., Wei, Z., Zhang, L., et al. (2026) · Euphytica · doi:10.1007/s10681-026-03677-x
Self-citationFine mapping and candidate gene dissection of the wheat powdery mildew resistance gene PmPBDH
Jin, Y., Li, J., Li, D., Yu, N., Zhao, Y., Wang, B., Guo, J., Zhang, J., Pan, G., Li, Y., et al. (2026) · Theoretical and Applied Genetics · doi:10.1007/s00122-026-05202-z
Self-citationSun, J., Pan, W., Wei, W., Liu, N., Yang, Z., Ma, J., Saqlain, M., Chen, S., Zhang, J., Zhang, B., et al. (2026) · The Crop Journal · doi:10.1016/j.cj.2026.03.013
Self-citationJiang, C., Wan, M., Jiang, T., Tan, J. Y. T., Boro, A., Yang, E., Yang, Z., & Li, G. (2026) · Plants · doi:10.3390/plants15091308
Pandey, B., Singh, M., & Mishra, A. K. (2026) · Journal of Genetic Engineering and Biotechnology · doi:10.1016/j.jgeb.2026.100700
Hao, C., Mao, H., Zong, Y., Lu, P., Wang, X., Liu, J., Xiao, J., Zhang, L., Li, L., Guo, W., et al. (2026) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2026.05.036
Bridging paradoxes in recombination at NLR cluster: A structural genomics perspective
Teano, G., roudaut, A., Gratias, A., & Geffroy, V. (2026) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2026.102908
TaR3H interacts with Pm21 and confers powdery mildew resistance
Si, C., Dong, Z., Cao, S., Luo, C., Hao, S., Wang, W., Hu, W., Liu, M.-Y., Zhang, R., Liu, J. J., et al. (2026) · Journal of Experimental Botany · doi:10.1093/jxb/erag297
Genotyping Advancements for Mitigating Biotic Stress-Induced Damage in Wheat
Negi, C., Singh, M., Vasistha, N. K., Singh, D., Kumar, K., & Vyas, P. (2026) · Springer eBooks · doi:10.1007/978-981-95-8785-8_13
Roychowdhury, R., Samantara, K., Das, S., Das, S. P., Kumar, A., Kumar, A., Sarker, U., & Sajeevan, R. S. (2026) · Current Plant Biology · doi:10.1016/j.cpb.2026.100651
Self-citationMapping and Transfer of the Powdery Mildew Resistance Gene Pm26 from Wild Emmer Wheat to Bread Wheat
Zhang, T., Li, F., Li, Z., Liu, A., Hao, X., Yu, Y., Ma, J., Xie, C., Wu, J., & Li, J. (2026) · Plant Disease · doi:10.1094/pdis-12-25-2526-re
Yang, H. F., Zhong, S., Chen, C., Tan, F., & Luo, P. (2026) · Theoretical and Applied Genetics · doi:10.1007/s00122-026-05360-0
- Authors
- Li, Y., Wei, Z.-Z., Sela, H., Govta, L., Klymiuk, V., Roychowdhury, R., Chawla, H. S., Ens, J., Wiebe, K., Bocharova, V., Ben-David, R., Pawar, P. B., Zhang, Y., Jaiwar, S., Molnár, I., Doležel, J., Coaker, G., Pozniak, C. J., & Fahima, T.
- Affiliations
- University of Haifa (IL)
- Sichuan Academy of Agricultural Sciences (CN)
- University of Saskatchewan (CA)
- China Agricultural University (CN)
- Czech Academy of Sciences, Institute of Experimental Botany (CZ)
- University of California, Davis (US)
- Corresponding author
- Fahima, Tzion
- ORCID
- Venue
- Plant Communications
- Publisher
- Elsevier BV
- Published
- 2024-01
- Volume
- 5
- Issue
- 1
- Pages
- 100646
- ISSN
- 2590-3462 (ISSN-L)
- PMC
- PMC10811346
- OpenAlex
- W4383197277
- Cited by
- 103
- References
- 102
- Citations by year
- 2026: 25 · 2025: 26 · 2024: 42 · 2023: 10
- FWCI
- 16.23
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Plant Communications (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by-nc-nd)
- Funders
- Genome Canada
- United States-Israel Binational Science Foundation (2019654)
- Israel Science Foundation (1366/18, 2289/16, 2342/18)
- National Science Foundation (1937855)
- Council for Higher Education
- European Regional Development Fund (CZ.02.1.01/0.0/0.0/16_019/0000827)
- United States - Israel Binational Science Foundation
- U.S. Department of Agriculture (2020-67013-32577)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Wheat and Barley Genetics and Pathology
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Powdery Mildew Fungal Diseases
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Disease Resistance and Genetics
- Keywords
- powdery mildew resistance, disease resistance genes, NLR, nucleotide-binding leucine-rich repeat, wild emmer wheat, tetraploid wheat, long-read genome sequencing, Oxford Nanopore, physical map, suppressed recombination, structural variants, virus-induced gene silencing, candidate gene identification
- MeSH terms
- Chromosome Mapping, Cloning, Molecular, Multigene Family, Triticum, Genes, Plant
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review