Hydrogen bonding stabilizes globular proteins

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Estimation of Hydrogen-Exchange Protection Factors from MD Simulation Based on Amide Hydrogen Bonding Analysis

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ProTstab – predictor for cellular protein stability

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Molecular Dynamic Simulation of Space and Earth-Grown Crystal Structures of Thermostable T1 Lipase Geobacillus zalihae Revealed a Better Structure

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Limited validity of group additivity for the folding energetics of the peptide group

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Contribution of the Hydrogen-Bond Network Involving a Tyrosine Triad in the Active Site to the Structure and Function of a Highly Proficient Ketosteroid Isomerase from Pseudomonas putida Biotype B,

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DOC2B, C2 Domains, and Calcium: A Tale of Intricate Interactions

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Number of Hydrogen Bonds per Unit Solvent Accessible Surface Area: A Descriptor of Functional States of Proteins

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Computational design of second‐site suppressor mutations at protein–protein interfaces

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Role of Surface Hydrophobic Residues in the Conformational Stability of Human Lysozyme at Three Different Positions,

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Stabilization of apoflavodoxin by replacing hydrogen-bonded charged Asp or Glu residues by the neutral isosteric Asn or Gln

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Backbone Hydrogen Bond Strengths Can Vary Widely in Transmembrane Helices

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Physicochemical factors of bioprocessing impact the stability of therapeutic proteins

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Role of different β‐turns in β‐hairpin conformation and stability studied by optical spectroscopy

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Experimental verification of the `stability profile of mutant protein' (SPMP) data using mutant human lysozymes

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Building native protein conformation from NMR backbone chemical shifts using Monte Carlo fragment assembly

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Understanding the role of residues around the active site tunnel towards generating a glucose-tolerant β-glucosidase from Agrobacterium tumefaciens 5A

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Increased helix and protein stability through the introduction of a new tertiary hydrogen bond 1 1P.E. Wright

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Assessment of New Meta and Hybrid Meta Density Functionals for Predicting the Geometry and Binding Energy of a Challenging System: The Dimer of H2S and Benzene

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Peptide Solubility Limits: Backbone and Side-Chain Interactions

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Effects of mutations in tyrosine hydroxylase associated with progressive dystonia on the activity and stability of the protein

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The contribution of buried polar groups to the conformational stability of the GCN4 coiled coil11Edited by C. R. Matthews

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Solution structure and dynamics of ribonuclease Sa

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Protein Stability Depends Critically on the Surface Hydrogen-Bonding Network: A Case Study of Bid Protein

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Shifting pH optimum of Bacillus circulans xylanase based on molecular modeling

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Size‐Controlled Nanoassemblies Based on Cyclodextrin‐Modified Dextrans

Wintgens, V., Nielsen, T. T., Larsen, K. L., & Amiel, C. (2011) · Macromolecular Bioscience · doi:10.1002/mabi.201100097 · Cited by 29

Perturbed Amelogenin Secondary Structure Leads to Uncontrolled Aggregation in Amelogenesis Imperfecta Mutant Proteins

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Quantification of helix–helix binding affinities in micelles and lipid bilayers

Lomize, A. L., Pogozheva, I. D., & Mosberg, H. I. (2004) · Protein Science · doi:10.1110/ps.04850804 · Cited by 29

Folding of a Helix Is Critically Stabilized by Polarization of Backbone Hydrogen Bonds: Study in Explicit Water

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Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts

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Structural Analysis of Phospholipase A2 from Functional Perspective. 1. Functionally Relevant Solution Structure and Roles of the Hydrogen-Bonding Network,

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Hierarchy of the Interaction Energy Distribution in the Spatial Structure of Globular Proteins and the Problem of Domain Definition

Berezovsky, I. N., Namiot, V. A., Tumanyan, V. G., & Ng, E. (1999) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.1999.10508347 · Cited by 27

Probing intermolecular backbone H-bonding in serine proteinase-protein inhibitor complexes

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Energy of Hydrogen Bonds Probed by the Adhesion of Functionalized Lipid Layers

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A Complete Thermodynamic Characterization of Electrostatic and Hydrophobic Associations in the Temperature Range 0 to 100 °C from Explicit-Solvent Molecular Dynamics Simulations

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A Double-Deletion Method to Quantifying Incremental Binding Energies in Proteins from Experiment: Example of a Destabilizing Hydrogen Bonding Pair

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Stabilization of Protein Structure

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Novel Polymorphisms and Genetic Characteristics of the Prion Protein Gene (PRNP) in Dogs—A Resistant Animal of Prion Disease

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Completely Buried, Non-Ion-Paired Glutamic Acid Contributes Favorably to the Conformational Stability of Pyrrolidone Carboxyl Peptidases from Hyperthermophiles,

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Polymer Bilayer Formation Due to Specific Interactions between β-Cyclodextrin and Adamantane: A Surface Force Study

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Weak Interactions in Protein Folding: Hydrophobic Free Energy, van der Waals Interactions, Peptide Hydrogen Bonds, and Peptide Solvation

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Minimizing frustration by folding in an aqueous environment

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Exploring the effects of hydrogen bonding and hydrophobic interactions on the foldability and cooperativity of helical proteins using a simplified atomic model

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Positive Contribution of Hydration Structure on the Surface of Human Lysozyme to the Conformational Stability

Funahashi, J., Takano, K., Yamagata, Y., & Yutani, K. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m110728200 · Cited by 22

Computational Methods for Protein Folding: Scaling a Hierarchy of Complexities

Jiang, T., Xu, Y., & Zhang, M. Q. (2002) · Cited by 22

The concept of protein folding/unfolding and its impacts on human health

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Effects of Heme Pocket Structure and Mobility on Cytochrome c Stability

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Buffalo worm (Alphitobius diaperinus) proteins: Structural properties, proteomics and nutritional benefits

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An energetic scale for equilibrium H/D fractionation factors illuminates hydrogen bond free energies in proteins

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Tuning the interactions in cyclodextrin polymer nanoassemblies

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A component analysis of the free energies of folding of 35 proteins: A consensus view on the thermodynamics of folding at the molecular level

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Probing light chain mutation effects on thrombin via molecular dynamics simulations and machine learning

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The ‘Relevant’ Stability of Proteins with Equilibrium Intermediates

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Detection of changes in pairwise interactions during allosteric transitions: Coupling between local and global conformational changes in GroEL

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βα-Hairpin Clamps Brace βαβ Modules and Can Make Substantive Contributions to the Stability of TIM Barrel Proteins

Yang, X.-Y., Kathuria, S. V., Vadrevu, R., & Matthews, C. R. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007179 · Cited by 19

Conformational stability of CopC and roles of residues Tyr79 and Trp83

Song, Z., Zheng, X., & Yang, B. (2013) · Protein Science · doi:10.1002/pro.2338 · Cited by 19

Computer Simulation of Protein-Ligand Interactions

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Solution structure and backbone dynamics of an ω‐conotoxin precursor

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Dynamics and Stability of the Metal Binding Domains of the Menkes ATPase and Their Interaction with Metallochaperone HAH1

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FGFR3 Transmembrane Domain Interactions Persist in the Presence of Its Extracellular Domain

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Impact of Deleterious Mutations on Structure, Function and Stability of Serum/Glucocorticoid Regulated Kinase 1: A Gene to Diseases Correlation

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Long‐range side‐chain–main‐chain interactions play crucial roles in stabilizing the (βα)8 barrel motif of the alpha subunit of tryptophan synthase

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Insights into the interactions of bisphenol and phthalate compounds with unamended and carnitine-amended montmorillonite clays

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Statistical Mechanics of Membrane Protein Conformation: A Homopolymer Model

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Studying the role of cooperative hydration in stabilizing folded protein states

Huggins, D. J. (2016) · Journal of Structural Biology · doi:10.1016/j.jsb.2016.09.003 · Cited by 17

Conformational stability and energetics of Plasmodium falciparum glutaredoxin

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Investigating single amino acid substitutions in PIM1 kinase: A structural genomics approach

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Investigation of the magnetic field effect upon interpolymeric complexes formation based on bovine serum albumin and poly(aspartic acid)

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A topologically conserved aliphatic residue in α-helix 6 stabilizes the hydrophobic core in domain II of glutathione transferases and is a structural determinant for the unfolding pathway

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Molecular mechanism of amyloidogenicity and neurotoxicity of a pro-aggregated tau mutant in the presence of histidine tautomerism via replica-exchange simulation

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Thermal stability of hydrophobic heme pocket variants of oxidized cytochrome c

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Structural, Biochemical, and Biophysical Studies of HLA-A2/Altered Peptide Ligands Binding to Viral-peptide-specific Human T-cell ReceptorsPreprint

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Thermostable iron oxide nanoparticle synthesis within recombinant ferritins from the hyperthermophile Pyrococcus yayanosii CH1

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A new method for determining the constant-pressure heat capacity change associated with the protein denaturation induced by guanidinium chloride (or urea)

Singh, R., Dar, T. A., Ahmad, S., Moosavi‐Movahedi, A. A., & Ahmad, F. (2007) · Biophysical Chemistry · doi:10.1016/j.bpc.2007.12.006 · Cited by 14

Engineering Aromatic–Aromatic Interactions To Nucleate Folding in Intrinsically Disordered Regions of Proteins

Balakrishnan, S., & Sarma, S. P. (2017) · Biochemistry · doi:10.1021/acs.biochem.7b00437 · Cited by 14

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Observation of a weak intra-residue C5 hydrogen-bond in a dipeptide containing Gly-Pro sequence

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Characterization of the binding surface of the translocated intimin receptor, an essential protein for EPEC and EHEC cell adhesion

Ross, N. T., & Miller, B. L. (2007) · Protein Science · doi:10.1110/ps.073128607 · Cited by 14

Macromolecular Assemblies Based on Coupled Inclusion Complex and Electrostatic Interactions

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SIMPLE estimate of the free energy change due to aliphatic mutations: Superior predictions based on first principles

Bueno, M., Camacho, C. J., & Sancho, J. (2007) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.21453 · Cited by 14

Theoretical Study of the Competition between Intramolecular Hydrogen Bonds and Solvation in the Cys-Asn-Ser Tripeptide

Soriano‐Correa, C., del Valle, F. J. O., Muñoz‐Losa, A., Galván, I. F., Martín, M. E., & Aguilar, M. A. (2010) · The Journal of Physical Chemistry B · doi:10.1021/jp1035162 · Cited by 13

Learning about protein hydrogen bonding by minimizing contrastive divergence

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Stereospecific interactions between histidine and monoclonal antibodies

Baek, Y., Emami, P., Singh, N., Ilott, A. J., Şahin, E., & Zydney, A. L. (2019) · Biotechnology and Bioengineering · doi:10.1002/bit.27109 · Cited by 12

Thermodynamic Characterization of the Osmolyte- and Ligand-Folded States of Bacillus subtilis Ribonuclease P Protein

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Variable Contributions of Tyrosine Residues to the Structural and Spectroscopic Properties of the Factor for Inversion Stimulation

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Structural investigations of N-methylformamide-water mixtures at various concentrations

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Decoding Allosteric Networks in Biocatalysts: Rational Approach to Therapies and Biotechnologies

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Sequence dependent folding motifs of the secondary structures of Gly-Pro and Pro-Gly containing oligopeptides

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Differential scanning calorimetry of proteins and Zimm–Bragg model in water

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Protein's native structure is dynamically stabilized by electronic polarization

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Application of molecular simulation to investigate chrome(III)-crosslinked collagen problems

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Forces contributing to the conformational stability of proteins

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Contribution of Hydrogen Bonding to the Conformational Stability of

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Contribution of Intra- and Intermolecular Hydrogen Bonds to the Conformational Stability of Human Lysozyme,

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Contribution of hydrogen bonds to protein stability

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