The DOI matches its Crossref record; 61 of the 61 references it cites were found in a registry or an index.
Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences
Open accessOverview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Colowick, S. P., Joshi, M. D., Jagannathan, & KAPLAN, N. O. (1966) · Cited by 26,137
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
Ewing, B., Hillier, L., Wendl, M. C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.175 · Cited by 6,967
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
Ewing, B., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.186 · Cited by 5,439
Consed: A Graphical Tool for Sequence Finishing
Gordon, D., Abajian, C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.195 · Cited by 3,302
Automatic annotation of organellar genomes with DOGMA
Wyman, S. K., Jansen, R. K., & Boore, J. L. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth352 · Cited by 2,988
Self-citationCases in which Parsimony or Compatibility Methods will be Positively Misleading
Felsenstein, J. (1978) · Systematic Biology · doi:10.1093/sysbio/27.4.401 · Cited by 2,896
REPuter: the manifold applications of repeat analysis on a genomic scale
Kurtz, S. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.22.4633 · Cited by 2,618
Shinozaki, K., Ohme, M., Tanaka, M., Wakasugi, T., Hayashida, N., Matsubayashi, T., Zaita, N., Chunwongse, J., Obokata, J., Yamaguchi-Shinozaki, K., et al. (1986) · The EMBO Journal · doi:10.1002/j.1460-2075.1986.tb04464.x · Cited by 2,403
Wolfe, K. H., Li, W. H., & Sharp, P. M. (1987) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.84.24.9054 · Cited by 2,317
Cited by
Contemporaneous and recent radiations of the world's major succulent plant lineages
Arakaki, M., Christin, P.-A., Nyffeler, R., Lendel, A., Eggli, U., Ogburn, R. M., Spriggs, E., Moore, M. J., & Edwards, E. J. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1100628108 · Cited by 530
Raubeson, L. A., Peery, R., Chumley, T. W., Dziubek, C., Fourcade, H. M., Boore, J. L., & Jansen, R. K. (2007) · BMC Genomics · doi:10.1186/1471-2164-8-174 · Cited by 451
Self-citationGuisinger, M. M., Kuehl, J. V., Boore, J. L., & Jansen, R. K. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msq229 · Cited by 440
Self-citationXi, Z., Ruhfel, B. R., Schaefer, H., Amorim, A. M., Sugumaran, M., Wurdack, K. J., Endress, P. K., Matthews, M. L., Stevens, P. F., Mathews, S., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1205818109 · Cited by 411
An update on chloroplast genomes
Ravi, V., Khurana, J. P., Tyagi, A. K., & Khurana, P. (2008) · Plant Systematics and Evolution · doi:10.1007/s00606-007-0608-0 · Cited by 411
Metadata
- Authors
- Jansen, R. K., Raubeson, L. A., Boore, J. L., dePamphilis, C. W., Chumley, T. W., Haberle, R. C., Wyman, S. K., Alverson, A. J., Peery, R., Herman, S. J., Fourcade, H. M., Kuehl, J. V., McNeal, J. R., Leebens-Mack, J., & Cui, L.
- Venue
- Methods in Enzymology
- Publisher
- Elsevier
- Published
- 2005
- Volume
- 395
- Pages
- 348-384
- ISSN
- 0076-6879 (ISSN-L)
- OpenAlex
- W1502417695
- Cited by
- 464
- References
- 61
- FWCI
- 23.57
- Type
- book chapter
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences. https://app.cochat.ai/papers/10.1016/s0076-6879(05)95020-9
- The paper
- Jansen, R. K., Raubeson, L. A., Boore, J. L., dePamphilis, C. W., Chumley, T. W., Haberle, R. C., Wyman, S. K., Alverson, A. J., Peery, R., Herman, S. J., Fourcade, H. M., Kuehl, J. V., McNeal, J. R., Leebens-Mack, J., & Cui, L. (2005). Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences. Methods in Enzymology. https://doi.org/10.1016/s0076-6879(05)95020-9
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.