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Chapter 20: Functional Assessment of Isolated Mitochondria In Vitro
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Mitochondria play a major role in cellular function, not only as a major site of ATP production, but also by regulating energy expenditure, apoptosis signaling, and production of reactive oxygen species. Altered mitochondrial function is reported to be a key underlying mechanism of many pathological states and in the aging process. Measurements conducted using intact mitochondria isolated from fresh tissue provides distinct information regarding the function of these organelles that complements conventional mitochondrial assays using previously frozen tissue as well as in vivo assessment using techniques such as magnetic resonance spectroscopy. This chapter describes the process by which mitochondria are isolated from small amounts of human skeletal muscle obtained by needle biopsy and two approaches used to assess mitochondrial oxidative capacity and other key components of mitochondrial physiology. We first describe a bioluminescent approach for measuring the rates of mitochondrial ATP production. Firefly luciferase catalyzes a light-emitting reaction whereby the substrate luciferin is oxidized in an ATP-dependent manner. A luminometer is used to quantify the light signal which is proportional to ATP concentration. We also review a method involving polarographic measurement of oxygen consumption. Measurements of oxygen consumption, which previously required large amounts of tissue, are now feasible with very small amounts of sample obtained by needle biopsy due to recent advances in the field of high-resolution respirometry. We illustrate how careful attention to substrate combinations and inhibitors allows an abundance of unique functional information to be obtained from isolated mitochondria, including function at various energetic states, oxidative capacity with electron flow through distinct complexes, coupling of oxygen consumption to ATP production, and membrane integrity. These measurements, together with studies of mitochondrial DNA abundance, mRNA and protein expression, and synthesis rates of mitochondrial proteins provide insightful mechanistic information about mitochondria in a variety of tissue types.
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Impaired Mitochondrial Activity in the Insulin-Resistant Offspring of Patients with Type 2 Diabetes
Petersen, K. F., Dufour, S., Befroy, D., Garcia, R., & Shulman, G. I. (2004) · New England Journal of Medicine · doi:10.1056/nejmoa031314 · Cited by 2,193
RESPIRATORY ENZYMES IN OXIDATIVE PHOSPHORYLATION
Chance, B., & Williams, G. R. (1955) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)57189-7 · Cited by 1,473
Endurance Exercise as a Countermeasure for Aging
Lanza, I. R., Short, D. K., Short, K. R., Raghavakaimal, S., Basu, R., Joyner, M. J., McConnell, J. P., & Nair, K. S. (2008) · Diabetes · doi:10.2337/db08-0349 · Cited by 582
Self-citationPatients with type 2 diabetes have normal mitochondrial function in skeletal muscle
Boushel, R., Gnaiger, E., Schjerling, P., Skovbro, M., Kraunsøe, R., & Dela, F. (2007) · Diabetologia · doi:10.1007/s00125-007-0594-3 · Cited by 519
Effects of exercise on mitochondrial content and function in aging human skeletal muscle
Menshikova, E. V., Ritov, V. B., Fairfull, L., Ferrell, R. E., Kelley, D. E., & Goodpaster, B. H. (2006) · The Journals of Gerontology Series A: Biological Sciences and Medical Sciences · doi:10.1093/gerona/61.6.534 · Cited by 398
Barazzoni, R., Short, K. R., & Nair, K. S. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.5.3343 · Cited by 367
Self-citationGnaiger, E. (2001) · Respiration Physiology · doi:10.1016/s0034-5687(01)00307-3 · Cited by 280 · cited 5×
“Detailed description of standardized instrumental and chemical calibrations is beyond the scope of this chapter and is discussed in detail elsewhere (Gnaiger, 2001).”
InfluentialAsmann, Y. W., Stump, C. S., Short, K. R., Coenen-Schimke, J. M., Guo, Z., Bigelow, M. L., & Nair, K. S. (2006) · Diabetes · doi:10.2337/db05-1230 · Cited by 207
Self-citationEffect of triiodothyronine on mitochondrial energy coupling in human skeletal muscle
Lebon, V., Dufour, S., Petersen, K. F., Ren, J., Jucker, B. M., Slezak, L. A., Cline, G. W., Rothman, D. L., & Shulman, G. I. (2001) · Journal of Clinical Investigation · doi:10.1172/jci200111775 · Cited by 174
Research works printed but not linked: 42
- Argov, 1987, Bioenergetic heterogeneity of human mitochondrial myopathies: Phosphorus magnetic resonance spectroscopy study, Neurology, 37, 257, 10.1212/WNL.37.2.257 · DOI
- Befroy, 2008, Increased substrate oxidation and mitochondrial uncoupling in skeletal muscle of endurance‐trained individuals, Proc. Natl. Acad. Sci. USA, 105, 16701, 10.1073/pnas.0808889105 · DOI
- Chance, 1956, Respiratory enzymes in oxidative phosphorylation. VI. The effects of adenosine diphosphate on azide‐treated mitochondria, J. Biol. Chem., 221, 477, 10.1016/S0021-9258(18)65266-4 · DOI · Paper page
- Chow, 2007, Impact of endurance training on murine spontaneous activity, muscle mitochondrial DNA abundance, gene transcripts, and function, J. Appl. Physiol., 102, 1078, 10.1152/japplphysiol.00791.2006 · DOI · Paper page
- Cogswell, 1993, Properties of skeletal muscle mitochondria isolated from subsarcolemmal and intermyofibrillar regions, Am. J. Physiol., 264, C383, 10.1152/ajpcell.1993.264.2.C383 · DOI · Paper page
- DeLuca, 1974, Kinetics of the firefly luciferase catalyzed reactions, Biochemistry, 13, 921, 10.1021/bi00702a015 · DOI · Paper page
- Drew, 2003, Method for measuring ATP production in isolated mitochondria: ATP production in brain and liver mitochondria of Fischer‐344 rats with age and caloric restriction, Am. J. Physiol. Regul. Integr. Comp. Physiol., 285, R1259, 10.1152/ajpregu.00264.2003 · DOI · Paper page
- Edwards, 1980, Needle biopsy of skeletal muscle in the diagnosis of myopathy and the clinical study of muscle function and repair, N. Engl. J. Med., 302, 261, 10.1056/NEJM198001313020504 · DOI
- Elander, 1985, Biochemical and morphometric properties of mitochondrial populations in human muscle fibres, Clin. Sci. (Lond.), 69, 153, 10.1042/cs0690153 · DOI
- Gnaiger, 2002, Mitochondrial respiration at low levels of oxygen and cytochrome c, Biochem. Soc. Trans., 30, 252, 10.1042/bst0300252 · DOI
- Gnaiger, 2000, High phosphorylation efficiency and depression of uncoupled respiration in mitochondria under hypoxia, Proc. Natl. Acad. Sci. USA, 97, 11080, 10.1073/pnas.97.20.11080 · DOI · Paper page
- Gray, 1999, Mitochondrial evolution, Science, 283, 1476, 10.1126/science.283.5407.1476 · DOI · Paper page
- Haller, 1994, A respirometer for investigating oxidative cell metabolism: Toward optimization of respiratory studies, Anal. Biochem., 218, 338, 10.1006/abio.1994.1188 · DOI
- Harman, 1956, Aging: A theory based on free radical and radiation chemistry, J. Gerontol., 11, 298, 10.1093/geronj/11.3.298 · DOI · Paper page
- Hood, 2001, Invited review: Contractile activity‐induced mitochondrial biogenesis in skeletal muscle, J. Appl. Physiol., 90, 1137, 10.1152/jappl.2001.90.3.1137 · DOI · Paper page
- Houmard, 1998, Fiber type and citrate synthase activity in the human gastrocnemius and vastus lateralis with aging, J. Appl. Physiol., 85, 1337, 10.1152/jappl.1998.85.4.1337 · DOI · Paper page
- Jaleel, 2008, In vivo measurement of synthesis rate of individual skeletal muscle mitochondrial proteins, Am. J. Physiol. Endocrinol. Metab., 295, E1255, 10.1152/ajpendo.90586.2008 · DOI
- Kay, 2000, Direct evidence for the control of mitochondrial respiration by mitochondrial creatine kinase in oxidative muscle cells in situ, J. Biol. Chem., 275, 6937, 10.1074/jbc.275.10.6937 · DOI · Paper page
- Kent‐Braun, 2000, Skeletal muscle oxidative capacity in young and older women and men, J. Appl. Physiol., 89, 1072, 10.1152/jappl.2000.89.3.1072 · DOI · Paper page
- Krieger, 1980, Populations of rat skeletal muscle mitochondria after exercise and immobilization, J. Appl. Physiol., 48, 23, 10.1152/jappl.1980.48.1.23 · DOI · Paper page
- Lanza, 2007, Effects of old age on human skeletal muscle energetics during fatiguing contractions with and without blood flow, J. Physiol., 583, 1093, 10.1113/jphysiol.2007.138362 · DOI
- Lundin, 1975, Analytical information obtainable by evaluation of the time course of firefly bioluminescence in the assay of ATP, Anal. Biochem., 66, 47, 10.1016/0003-2697(75)90723-X · DOI · Paper page
- Mahaut‐Smith, 2000, ADP is not an agonist at P2X(1) receptors: Evidence for separate receptors stimulated by ATP and ADP on human platelets, Br. J. Pharmacol., 131, 108, 10.1038/sj.bjp.0703517 · DOI
- Menshikova, 2005, Effects of weight loss and physical activity on skeletal muscle mitochondrial function in obesity, Am. J. Physiol. Endocrinol. Metab., 288, E818, 10.1152/ajpendo.00322.2004 · DOI · Paper page
- Nair, 2008, Asian Indians have enhanced skeletal muscle mitochondrial capacity to produce ATP in association with severe insulin resistance, Diabetes, 57, 1166, 10.2337/db07-1556 · DOI · Paper page
- Nair, 1988, Leucine incorporation into mixed skeletal muscle protein in humans, Am. J. Physiol., 254, E208
- Nedergaard, 1979, Overview—Preparation and properties of mitochondria from different sources, Methods Enzymol., 55, 3, 10.1016/0076-6879(79)55003-4 · DOI
- Petersen, 2003, Mitochondrial dysfunction in the elderly: Possible role in insulin resistance, Science, 300, 1140, 10.1126/science.1082889 · DOI · Paper page
- Puchowicz, 2004, Oxidative phosphorylation analysis: Assessing the integrated functional activity of human skeletal muscle mitochondria—Case studies, Mitochondrion, 4, 377, 10.1016/j.mito.2004.07.004 · DOI
- Rasmussen, 1997, Optimization of preparation of mitochondria from 25 to 100 mg skeletal muscle, Anal. Biochem., 252, 153, 10.1006/abio.1997.2304 · DOI
- Rasmussen, 1997, Small scale preparation of skeletal muscle mitochondria, criteria of integrity, and assays with reference to tissue function, Mol. Cell. Biochem., 174, 55, 10.1023/A:1006851705996 · doi:10.1023/a:1006851705996
- Ritov, 2005, Deficiency of subsarcolemmal mitochondria in obesity and type 2 diabetes, Diabetes, 54, 8, 10.2337/diabetes.54.1.8 · DOI · Paper page
- Rooyackers, 1996, Effect of age on in vivo rates of mitochondrial protein synthesis in human skeletal muscle, Proc. Natl. Acad. Sci. USA, 93, 15364, 10.1073/pnas.93.26.15364 · DOI · Paper page
- Srere, 1969, Citrate synthase, Methods Enzymol., 13, 3, 10.1016/0076-6879(69)13005-0 · DOI · Paper page
- Short, 2005, Decline in skeletal muscle mitochondrial function with aging in humans, Proc. Natl. Acad. Sci. USA, 102, 5618, 10.1073/pnas.0501559102 · DOI · Paper page
- Short, 2003, Impact of aerobic exercise training on age‐related changes in insulin sensitivity and muscle oxidative capacity, Diabetes, 52, 1888, 10.2337/diabetes.52.8.1888 · DOI · Paper page
- Slater, 1953, The adeninenucleotide specificity of oxidative phosphorylation, Biochem. J., 53, ii
- Stadlmann, 2006, Preserved coupling of oxidative phosphorylation but decreased mitochondrial respiratory capacity in IL‐1beta‐treated human peritoneal mesothelial cells, Cell Biochem. Biophys., 44, 179, 10.1385/CBB:44:2:179 · DOI
- Stump, 2003, Effect of insulin on human skeletal muscle mitochondrial ATP production, protein synthesis, and mRNA transcripts, Proc. Natl. Acad. Sci. USA, 100, 7996, 10.1073/pnas.1332551100 · DOI · Paper page
- Trounce, 1996, Assessment of mitochondrial oxidative phosphorylation in patient muscle biopsies, lymphoblasts, and transmitochondrial cell lines, Methods Enzymol., 264, 484, 10.1016/S0076-6879(96)64044-0 · DOI · Paper page
- Wibom, 1990, ATP production rate in mitochondria isolated from microsamples of human muscle, Am. J. Physiol., 259, E204
- Wicks, 1991, Mitochondrial adaptations in denervated muscle: Relationship to muscle performance, Am. J. Physiol., 260, C841, 10.1152/ajpcell.1991.260.4.C841 · DOI
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Self-citationLactate metabolism is associated with mammalian mitochondria
Chen, Y.-J., Mahieu, N. G., Huang, X., Singh, M., Crawford, P. A., Johnson, S. L., Gross, R. W., Schaefer, J., & Patti, G. J. (2016) · Nature Chemical Biology · doi:10.1038/nchembio.2172 · Cited by 326
Mitochondrial Structure and Function Are Disrupted by Standard Isolation Methods
Picard, M., Taivassalo, T., Ritchie, D., Wright, K. J., Thomas, M. M., Romestaing, C., & Hepple, R. T. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018317 · Cited by 318
Mitochondrial Dysfunction in Heart Failure With Preserved Ejection Fraction
Kumar, A. A., Kelly, D. P., & Chirinos, J. A. (2019) · Circulation · doi:10.1161/circulationaha.118.036259 · Cited by 298
Neufeld-Cohen, A., Robles, M. S., Aviram, R., Manella, G., Adamovich, Y., Ladeuix, B., Nir, D., Rousso-Noori, L., Kuperman, Y., Golik, M., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1519650113 · Cited by 262
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