The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Repbase Update: a database and an electronic journal of repetitive elements
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Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The first database on human repetitive DNA elements, including TRs, was developed in 1992 (117), eventually becoming RepBase (118).”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [118]
In the citing paper
“Despite this diversity, the majority of these databases rely on the results of well-established automated bioinformatic approaches such as the Tandem Repeats Finder (TRF) program (130) or RepeatMasker (118) to characterize repeat content.”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [118]
In the citing paper
“Especially the use of RepeatMasker as the preferred software to identify and mask repeats, (http://www.repeatmasker.org/), has allowed the standardized treatment of raw genomic sequences and reproducibility of protocols for the establishment of these databases.”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [118]
Citations
Cites
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
Shimamura, M., Yasue, H., Ohshima, K., Abe, H., Kato, H., Kishiro, T., Goto, M., Munechika, I., & Okada, N. (1997) · Nature · doi:10.1038/41759 · Cited by 399
Cited by
Sorted by citations
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216
The Human Genome Browser at UCSC
Kent, W. J., Sugnet, C. W., Furey, T. S., Roskin, K. M., Pringle, T. H., Zahler, A. M., & Haussler, A. D. (2002) · Genome Research · doi:10.1101/gr.229102 · Cited by 10,400
Tissue-specific mutation accumulation in human adult stem cells during life
Blokzijl, F., de Ligt, J., Jager, M., Sasselli, V., Roerink, S., Sasaki, N., Huch, M., Boymans, S., Kuijk, E., Prins, P., et al. (2016) · Nature · doi:10.1038/nature19768 · Cited by 935
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos
Peaston, A. E., Evsikov, A. V., Graber, J. H., de Vries, W. N., Holbrook, A. E., Solter, D., & Knowles, B. B. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.09.004 · Cited by 710
An initial map of insertion and deletion (INDEL) variation in the human genome
Mills, R. E., Luttig, C. T., Larkins, C. E., Beauchamp, A., Tsui, C., Pittard, W. S., & Devine, S. E. (2006) · Genome Research · doi:10.1101/gr.4565806 · Cited by 673
Evaluation of next generation sequencing platforms for population targeted sequencing studies
Harismendy, O., Ng, P. C., Strausberg, R. L., Wang, X., Stockwell, T. B., Beeson, K. Y., Schork, N. J., Murray, S. S., Topol, E. J., Levy, S., et al. (2009) · Genome Biology · doi:10.1186/gb-2009-10-3-r32 · Cited by 614
RAG1 Core and V(D)J Recombination Signal Sequences Were Derived from Transib Transposons
Kapitonov, V. V., & Jurka, J. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030181 · Cited by 521
Self-citationIdentification of a broadly fibrogenic macrophage subset induced by type 3 inflammation
Fabre, T., Barron, A. M. S., Christensen, S. M., Asano, S., Bound, K., Lech, M. P., Wadsworth, M. H., Chen, X., Wang, C., Wang, J., et al. (2023) · Science Immunology · doi:10.1126/sciimmunol.add8945 · Cited by 355
Tørresen, O. K., Star, B., Mier, P., Andrade-Navarro, M. A., Bateman, A., Jarnot, P., Gruca, A., Grynberg, M., Kajava, A. V., Promponas, V. J., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz841 · Cited by 347
Ram, O., Goren, A., Amit, I., Shoresh, N., Yosef, N., Ernst, J., Kellis, M., Gymrek, M., Issner, R., Coyne, M., et al. (2011) · Cell · doi:10.1016/j.cell.2011.09.057 · Cited by 331
Molecular paleontology of transposable elements in the Drosophila melanogaster genome
Kapitonov, V. V., & Jurka, J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0732024100 · Cited by 288
Self-citationEpigenetic evolution and lineage histories of chronic lymphocytic leukaemia
Gaiti, F., Chaligne, R., Gu, H., Brand, R. M., Kothen-Hill, S., Schulman, R. C., Grigorev, K., Risso, D., Kim, K.-T., Pastore, A., et al. (2019) · Nature · doi:10.1038/s41586-019-1198-z · Cited by 262
Harbinger Transposons and an Ancient HARBI1 Gene Derived from a Transposase
Kapitonov, V. V., & Jurka, J. (2004) · DNA and Cell Biology · doi:10.1089/104454904323090949 · Cited by 128
Self-citationMann, I. K., Chatterjee, R., Zhao, J., He, X., Weirauch, M. T., Hughes, T. R., & Vinson, C. (2013) · Genome Research · doi:10.1101/gr.146654.112 · Cited by 126
Molecular mechanisms mediated by human endogenous retroviruses (HERVs) in autoimmunity
Balada, E., Ordi‐Ros, J., & Vilardell‐Tarrés, M. (2009) · Reviews in Medical Virology · doi:10.1002/rmv.622 · Cited by 122
The NF1 Gene Contains Hotspots for L1 Endonuclease-Dependent De Novo Insertion
Wimmer, K., Callens, T., Wernstedt, A., & Messiaen, L. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002371 · Cited by 107
SIRT7 mediates L1 elements transcriptional repression and their association with the nuclear lamina
Vazquez, B. N., Thackray, J. K., Simonet, N. G., Chahar, S., Kane-Goldsmith, N., Newkirk, S. J., Lee, S., Xing, J., Verzi, M. P., An, W., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz519 · Cited by 79
Multiple Groups of Endogenous Betaretroviruses in Mice, Rats, and Other Mammals
Baillie, G. J., van de Lagemaat, L. N., Baust, C., & Mager, D. L. (2004) · Journal of Virology · doi:10.1128/jvi.78.11.5784-5798.2004 · Cited by 84
SILVA, J. C., SHABALINA, S. A., HARRIS, D. G., SPOUGE, J. L., & KONDRASHOV, A. S. (2003) · Genetical Research · doi:10.1017/s0016672303006268 · Cited by 63
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet
Viner, C., Ishak, C. A., Johnson, J., Walker, N. J., Shi, H., Sjöberg-Herrera, M. K., Shen, S. Y., Lardo, S. M., Adams, D. J., Ferguson-Smith, A. C., et al. (2016) · doi:10.1101/043794 · Cited by 18
Metadata
- Authors
- Jurka, J.
- Venue
- Trends in Genetics
- Publisher
- Elsevier BV
- Published
- 2000-09-01
- Volume
- 16
- Issue
- 9
- Pages
- 418-420
- ISSN
- 0168-9525
- Cited by
- 883
- References
- 1
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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