Chromatin structure and dynamics: Functional implications
Abstract
In eucaryotes, DNA packaging into nucleosomes and its organization in a chromatin fiber generate constraints for all processes involving DNA, such as DNA-replication, -repair, -recombination, and -transcription. Transient changes in chromatin structure allow overcoming these constraints with different requirements in regions where processes described above are initiated. Mechanisms involved in chromatin dynamics are complex. Multiprotein complexes which can contain histone-acetyltransferase, -deacetylase, -methyltransferase or -kinase activities are targeted by regulatory factors to precise regions of the genome. These enzymes have been shown to modify histone-tails within specific nucleosomes. Post-translational modifications of histone-tails constitute a code that is thought to contribute to the nucleosome or to the chromatin fiber remodeling, either directly, or through the recruitment of other proteins. Other multiprotein complexes, such as ATP-dependent remodeling complexes, play an essential role in chromatin fiber dynamics allowing nucleosome sliding and redistribution on the DNA. We will focus here on the chromatin structure and its consequences for DNA damaging, replication, repair, and transcription and we will discuss the mechanisms of chromatin remodeling.
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Chromatin condensation status and existing chromatin dynamics influence both UV damage occurrence and repair capacity.
“One of the critical factors that influence both damage occurrence and repair capacity is certainly the chromatin condensation status and existing chromatin dynamics.”
From Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies (2020) · cites this paper as [30]
Cites
Crystal structure of the nucleosome core particle at 2.8 Å resolution
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., & Richmond, T. J. (1997) · Nature · doi:10.1038/38444 · Cited by 9,466 · see citing works
The language of covalent histone modifications
Strahl, B. D., & Allis, C. D. (2000) · Nature · doi:10.1038/47412 · Cited by 8,679 · see citing works
Histone acetylation in chromatin structure and transcription
Grunstein, M. (1997) · Nature · doi:10.1038/38664 · Cited by 2,884 · see citing works
Regulation of chromatin structure by site-specific histone H3 methyltransferases
Rea, S., Eisenhaber, F., O'Carroll, D., Strahl, B. D., Sun, Z.-W., Schmid, M., Opravil, S., Mechtler, K., Ponting, C. P., Allis, C. D., et al. (2000) · Nature · doi:10.1038/35020506 · Cited by 2,845 · see citing works
A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage
Paull, T. T., Rogakou, E. P., Yamazaki, V., Kirchgessner, C. U., Gellert, M., & Bonner, W. M. (2000) · Current Biology · doi:10.1016/s0960-9822(00)00610-2 · Cited by 2,098 · see citing works
Histone acetylation and transcriptional regulatory mechanisms
Struhl, K. (1998) · Genes & Development · doi:10.1101/gad.12.5.599 · Cited by 1,815 · see citing works
Structure and ligand of a histone acetyltransferase bromodomain
Dhalluin, C., Carlson, J. E., Zeng, L., He, C., Aggarwal, A. K., Zhou, M.-M., & Zhou, M.-M. (1999) · Nature · doi:10.1038/20974 · Cited by 1,732 · see citing works
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex
Bell, S. P., & Stillman, B. (1992) · Nature · doi:10.1038/357128a0 · Cited by 1,278 · see citing works
Regulation of Transcription by a Protein Methyltransferase
Chen, D., Ma, H., Hong, H., Koh, S. S., Huang, S., Schurter, B. T., Aswad, D. W., & Stallcup, M. R. (1999) · Science · doi:10.1126/science.284.5423.2174 · Cited by 1,214 · see citing works
The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I
Wu, C. C. M. (1980) · Nature · doi:10.1038/286854a0 · Cited by 1,118 · see citing works
Involvement of the TIP60 Histone Acetylase Complex in DNA Repair and Apoptosis
Ikura, T., Ogryzko, V. V., Grigoriev, M., Groisman, R., Wang, J., Horikoshi, M., Scully, R., Qin, J., & Nakatani, Y. (2000) · Cell · doi:10.1016/s0092-8674(00)00051-9 · Cited by 1,029 · see citing works
Cockerill, P. N., & Garrard, W. T. (1986) · Cell · doi:10.1016/0092-8674(86)90761-0 · Cited by 881 · see citing works
Hsu, J.-Y., Sun, Z., Li, X., Reuben, M., Tatchell, K., Bishop, D. K., Grushcow, J. M., Brame, C. J., Caldwell, J., Hunt, D. F., et al. (2000) · Cell · doi:10.1016/s0092-8674(00)00034-9 · Cited by 861 · see citing works
A chromatin remodelling complex involved in transcription and DNA processing
Shen, X., Mizuguchi, G., Hamiche, A., & Wu, C. (2000) · Nature · doi:10.1038/35020123 · Cited by 807 · see citing works
Replication-Dependent Marking of DNA by PCNA Facilitates CAF-1-Coupled Inheritance of Chromatin
Shibahara, K., & Stillman, B. (1999) · Cell · doi:10.1016/s0092-8674(00)80661-3 · Cited by 697 · see citing works
Cosma, M. P., Tanaka, T. U., & Nasmyth, K. (1999) · Cell · doi:10.1016/s0092-8674(00)80740-0 · Cited by 693 · see citing works
Kinetics of Core Histones in Living Human Cells
Kimura, H., & Cook, P. R. (2001) · The Journal of Cell Biology · doi:10.1083/jcb.153.7.1341 · Cited by 675 · see citing works
Sequence‐specific positioning of nucleosomes over the steroid‐inducible MMTV promoter.
Richard-Foy, H., & Hager, G. L. (1987) · The EMBO Journal · doi:10.1002/j.1460-2075.1987.tb02507.x · Cited by 594 · see citing works
Self-citationCrystal structure of a nucleosome core particle containing the variant histone H2A.Z.
Luger, K., Suto, R. K., Clarkson, M. J., & Tremethick, D. J. (2000) · Nature Structural Biology · doi:10.1038/81971 · Cited by 541 · see citing works
Requirement of Rsk-2 for Epidermal Growth Factor-Activated Phosphorylation of Histone H3
Sassone‐Corsi, P., Mizzen, C. A., Cheung, P., Crosio, C., Monaco, L., Jacquot, S., Hanauer, A., & Allis, C. D. (1999) · Science · doi:10.1126/science.285.5429.886 · Cited by 485 · see citing works
Almer, A., Rudolph, H. K., Hinnen, A., & Hörz, W. (1986) · The EMBO Journal · doi:10.1002/j.1460-2075.1986.tb04552.x · Cited by 455 · see citing works
Lo, W., Duggan, L. J., Tolga, N. C., Emre, N. C. T., Belotserkovskya, R., Lane, W. S., Shiekhattar, R., & Berger, S. L. (2001) · Science · doi:10.1126/science.1062322 · Cited by 369 · see citing works
Längst, G., Bonte, E. J., Corona, D. F. V., & Becker, P. B. (1999) · Cell · doi:10.1016/s0092-8674(00)80797-7 · Cited by 355 · see citing works
Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain
Tumbar, T., Sudlow, G., & Belmont, A. S. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.145.7.1341 · Cited by 351 · see citing works
Arents, G., & Moudrianakis, E. N. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.22.10489 · Cited by 346 · see citing works
Structure of replicating simian virus 40 minichromosomes
Sogo, J. M., Stahl, H. D., Koller, T., & Knippers, R. (1986) · Journal of Molecular Biology · doi:10.1016/0022-2836(86)90390-6 · Cited by 342 · see citing works
ATP-Dependent Histone Octamer Sliding Mediated by the Chromatin Remodeling Complex NURF
Hamiche, A., Sandaltzopoulos, R., Gdula, D. A., & Wu, C. (1999) · Cell · doi:10.1016/s0092-8674(00)80796-5 · Cited by 339 · see citing works
Role of replication time in the control of tissue-specific gene expression.
Holmquist, G. P. (1987) · PubMed · Cited by 249 · see citing works
General transcription factors bind promoters repressed by Polycomb group proteins
Breiling, A., Turner, B. M., Bianchi, M. E., & Orlando, V. (2001) · Nature · doi:10.1038/35088090 · Cited by 242 · see citing works
Garrity, P., & Wold, B. J. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.3.1021 · Cited by 235 · see citing works
Human centromere protein A (CENP-A) can replace histone H3 in nucleosome reconstitution in vitro
Yoda, K., Ando, S., Morishita, S., Houmura, K., Hashimoto, K., Takeyasu, K., & Okazaki, T. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.130189697 · Cited by 233 · see citing works
Characterization of the Bovine Papilloma virus plasmid maintenance sequences
Lusky, M., & Botchan, M. R. (1984) · Cell · doi:10.1016/0092-8674(84)90232-0 · Cited by 222 · see citing works
Brand, M., Moggs, J. G., Oulad‐Abdelghani, M., Lejeune, F., Dilworth, F. J., Stévenin, J., Almouzni, G., & Tora, L. (2001) · The EMBO Journal · doi:10.1093/emboj/20.12.3187 · Cited by 209 · see citing works
Carruthers, V. B., Sherman, G. D., & Sibley, L. D. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.19.14346 · Cited by 198 · see citing works
Transcription coactivator p300 binds PCNA and may have a role in DNA repair synthesis
Hasan, S., Hassa, P. O., Imhof, R., & Hottiger, M. O. (2001) · Nature · doi:10.1038/35066610 · Cited by 177 · see citing works
Ura, K., Araki, M., Saeki, H., Masutani, C., Ito, T., Iwai, S., Mizukoshi, T., Kaneda, Y., & Hanaoka, F. (2001) · The EMBO Journal · doi:10.1093/emboj/20.8.2004 · Cited by 168 · see citing works
The ins and outs of nucleosome assembly
Mello, J. A., & Almouzni, G. (2001) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(00)00170-2 · Cited by 150 · see citing works
Nightingale, K. P., Wellinger, R. E., Sogo, J. M., & Becker, P. B. (1998) · The EMBO Journal · doi:10.1093/emboj/17.10.2865 · Cited by 140 · see citing works
DNA repair: Spot(light)s on chromatin
Modesti, M., & Kanaar, R. (2001) · Current Biology · doi:10.1016/s0960-9822(01)00112-9 · Cited by 130 · see citing works
Nucleosome linking number change controlled by acetylation of histones H3 and H4.
Norton, V. G., Marvin, K. W., Yau, P. M., & Bradbury, E. M. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)45450-0 · Cited by 129 · see citing works
Role of Histone N-Terminal Tails and Their Acetylation in Nucleosome Dynamics
Morales, V., & Richard‐Foy, H. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.19.7230-7237.2000 · Cited by 122 · see citing works
Self-citationCleavage of chromatin with methidiumpropyl-EDTA . iron(II).
Cartwright, I. L., Hertzberg, R., Dervan, P. B., & Elgin, S. C. R. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.11.3213 · Cited by 97 · see citing works
Glucocorticoid Regulation of Transcription at an Amplified, Episomal Promoter
Ostrowski, M. C., Richard‐Foy, H., Wolford, R. G., Berard, D. S., & Hager, G. L. (1983) · Molecular and Cellular Biology · doi:10.1128/mcb.3.11.2045 · Cited by 87 · see citing works
Self-citationEffects of histone acetylation on chromatin topology in vivo.
Lutter, L. C., Judis, L. M., & Paretti, R. F. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.11.5004 · Cited by 62 · see citing works
Something new to hang your HAT on
Montminy, M. (1997) · Nature · doi:10.1038/42594 · Cited by 59 · see citing works
Origins of DNA replication that function in eukaryotic cells
DePamphilis, M. L. (1993) · Current Opinion in Cell Biology · doi:10.1016/0955-0674(93)90008-e · Cited by 55 · see citing works
Giamarchi, C. M., Solanas, M., Chailleux, C., Augereau, P., Vignon, F., Rochefort, H., & Richard‐Foy, H. (1999) · Oncogene · doi:10.1038/sj.onc.1202317 · Cited by 51 · see citing works
Self-citationSivolob, A., Lucia, F. D., Révet, B., & Prunell, A. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.2380 · Cited by 28 · see citing works
Shanblatt, S. H., & Revzin, A. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)60823-3 · Cited by 22 · see citing works
Migration of a Holliday Junction through a Nucleosome Directed by the E. coli RuvAB Motor Protein
Grigoriev, M., & Hsieh, P. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80281-6 · Cited by 20 · see citing works
The bovine papillomavirus genome and its uses as a eukaryotic vector
Stephens, P. E., & Hentschel, C. C. (1987) · Biochemical Journal · doi:10.1042/bj2480001 · Cited by 18 · see citing works
Couette, B., Ricousse-Roussanne, S. L., Fortin, D., Rafestin-Oblin, M. E., & Richard‐Foy, H. (1994) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/0167-4781(94)90219-4 · Cited by 13 · see citing works
Self-citationAdom, J. N., & Richard‐Foy, H. (1991) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(91)90949-8 · Cited by 12 · see citing works
Self-citationHagen, K. G. T., Ravnan, J. B., & Cohen, S. N. (1995) · Journal of Molecular Biology · doi:10.1006/jmbi.1995.0605 · Cited by 7 · see citing works
Flagged first, then by citations
1 of the 56 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Human SirT1 interacts with histone H1 and promotes formation of facultative heterochromatin.
Vaquero, A., Scher, M., Lee, D., Erdjument-Bromage, H., Tempst, P., & Reinberg, D. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.08.031 · Cited by 916 · see citing works
The Constantly Changing Face of Chromatin
Vaquero, A., Loyola, A., & Reinberg, D. (2003) · Science of Aging Knowledge Environment · doi:10.1126/sageke.2003.14.re4 · Cited by 237 · see citing works
Szulakowski, P., Crowther, A. J. L., Jiménez, L. A., Donaldson, K., Mayer, R. J., Leonard, T. B., MacNee, W., & Drost, E. (2006) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.200505-725oc · Cited by 176 · see citing works
Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies
Kciuk, M., Marciniak, B., Mojzych, M., & Kontek, R. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21197264 · Cited by 168 · see citing works
Regulation of the mammalian epigenome by long noncoding RNAs
Whitehead, J., Pandey, G. K., & Kanduri, C. (2008) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2008.10.007 · Cited by 145 · see citing works
Pérez-Cadahı́a, B., Drobic, B., & Davie, J. (2009) · Biochemistry and Cell Biology · doi:10.1139/o09-053 · Cited by 142 · see citing works
Wang, R., Li, Q., Helfer, C. M., Jiao, J., & You, J. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.323493 · Cited by 140 · see citing works
Huser, T. R., Orme, C. A., Hollars, C. W., Corzett, M., & Balhorn, R. (2009) · Journal of Biophotonics · doi:10.1002/jbio.200910012 · Cited by 124 · see citing works
Perrier, J., Durand, A., Giardina, T., & PUIGSERVER, A. J. (2005) · Biochimie · doi:10.1016/j.biochi.2005.04.002 · Cited by 115 · see citing works
Histone Acetyltransferases in Plant Development and Plasticity
Boycheva, I., Vassileva, V., & Iantcheva, A. (2014) · Current Genomics · doi:10.2174/138920291501140306112742 · Cited by 111 · see citing works
Drogaris, P., Villeneuve, V., Pomiès, C., Lee, E. H., Bourdeau, V., Bonneil, É., Ferbeyre, G., Verreault, A., & Thibault, P. (2012) · Scientific Reports · doi:10.1038/srep00220 · Cited by 83 · see citing works
A Tale of Early Response Genes
Sng, J., Taniura, H., & Yoneda, Y. (2004) · Biological and Pharmaceutical Bulletin · doi:10.1248/bpb.27.606 · Cited by 77 · see citing works
Suzuki, M., Suzuki, K., Kodama, S., & Watanabe, M. (2006) · Radiation Research · doi:10.1667/rr3508.1 · Cited by 72 · see citing works
Repairing DNA damage in chromatin
Gontijo, A. M., Green, C., & Almouzni, G. (2003) · Biochimie · doi:10.1016/j.biochi.2003.10.018 · Cited by 70 · see citing works
Environmental Impact on Male (In)Fertility via Epigenetic Route
Cescon, M., Chianese, R., & Tavares, R. S. (2020) · Journal of Clinical Medicine · doi:10.3390/jcm9082520 · Cited by 68 · see citing works
A replication stress-induced synchronization method for Arabidopsis thaliana root meristems
Cools, T., Iantcheva, A., Maes, S., den Daele, H. V., & Veylder, L. D. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04361.x · Cited by 66 · see citing works
Robinson, K. M., & Schultz, M. C. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.22.7937-7946.2003 · Cited by 61 · see citing works
Michielse, C. B., Salim, K., Ragas, P. C., Ram, A. F. J., Kudla, B., Jarry, B., Punt, P. J., & van den Hondel, C. A. M. J. J. (2004) · Molecular Genetics and Genomics · doi:10.1007/s00438-004-1003-y · Cited by 60 · see citing works
Giaginis, C., Damaskos, C., Koutsounas, I. S., Zizi‐Serbetzoglou, A., Tsoukalas, N., Patsouris, E., Kouraklis, G. P., & Theocharis, S. E. (2015) · BMC Gastroenterology · doi:10.1186/s12876-015-0379-y · Cited by 52 · see citing works
Nuclear Receptor Recruitment of Histone-Modifying Enzymes to Target Gene Promoters
Tsai, C., & Fondell, J. D. (2004) · Vitamins and hormones · doi:10.1016/s0083-6729(04)68003-4 · Cited by 50 · see citing works
Early-life stress interactions with the epigenome
Lewis, C. R., & Olive, M. F. (2014) · Behavioural Pharmacology · doi:10.1097/fbp.0000000000000057 · Cited by 51 · see citing works
The mechanisms of action of chromatin remodelers and implications in development and disease
Sahu, R. K., Singh, S., & Tomar, R. S. (2020) · Biochemical Pharmacology · doi:10.1016/j.bcp.2020.114200 · Cited by 50 · see citing works
Theocharis, S. E., Klijanienko, J., Giaginis, C., Rodriguez, J., Jouffroy, T., Girod, A., Alexandrou, P. T., & Sastre‐Garau, X. (2011) · Journal of Oral Pathology and Medicine · doi:10.1111/j.1600-0714.2011.01031.x · Cited by 48 · see citing works
Analysis of epigenetic alterations to chromatin during development
Minard, M. E., Jain, A. K., & Barton, M. C. (2009) · genesis · doi:10.1002/dvg.20534 · Cited by 47 · see citing works
Giaginis, C., Alexandrou, P. T., Delladetsima, I. K., Giannopoulou, I., Patsouris, E., & Theocharis, S. E. (2013) · Tumor Biology · doi:10.1007/s13277-013-1007-5 · Cited by 46 · see citing works
Brachman, E. E., & Kmiec, E. B. (2004) · Journal of Cell Science · doi:10.1242/jcs.01250 · Cited by 46 · see citing works
Banerjee, S., & Roy, S. (2021) · Cell Cycle · doi:10.1080/15384101.2021.1966584 · Cited by 42 · see citing works
Potential role of HDAC inhibitors in cancer therapy: Insights into oral squamous cell carcinoma
Iglesias‐Linares, A., Yáñez-Vico, R.-M., & González‐Moles, M. Á. (2010) · Oral Oncology · doi:10.1016/j.oraloncology.2010.01.009 · Cited by 41 · see citing works
Li, Y., He, B., & Wang, Y.-Z. (2009) · Inhalation Toxicology · doi:10.1080/08958370802322596 · Cited by 37 · see citing works
Acute leukemia associated with valproic acid treatment: A novel mechanism for leukemogenesis?
Coyle, T., Bair, A. K., Stein, C. K., Vajpayee, N., Mehdi, S. B., & Wright, J. (2005) · American Journal of Hematology · doi:10.1002/ajh.20273 · Cited by 35 · see citing works
Ohdate, H., Lim, C., Kokubo, T., Matsubara, K., Kimata, Y., & Kohno, K. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m213220200 · Cited by 38 · see citing works
Hyndman, K. A., Kasztan, M., Mendoza, L. D., & Monteiro‐Pai, S. (2019) · American Journal of Physiology-Renal Physiology · doi:10.1152/ajprenal.00499.2018 · Cited by 33 · see citing works
Handcuff for sisters: A new model for sister chromatid cohesion
Zhang, N., & Pati, D. (2009) · Cell Cycle · doi:10.4161/cc.8.3.7586 · Cited by 28 · see citing works
Grau, B., Popescu, C., Torroja, L., Ortuño‐Sahagún, D., Boros, I., & Ferrús, A. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.01307-07 · Cited by 27 · see citing works
Li, Y., He, B., Wang, Y.-Z., & Wang, J. (2009) · Respiratory Research · doi:10.1186/1465-9921-10-79 · Cited by 26 · see citing works
Linking Cell Cycle Reentry and DNA Damage in Neurodegeneration
Kim, D., & Tsai, L. (2009) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2009.04105.x · Cited by 26 · see citing works
Lippert, M. J., Freedman, J. A., Barber, M. A., & Jinks-Robertson, S. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.11.4801-4809.2004 · Cited by 25 · see citing works
Żabka, A., Polit, J. T., & Maszewski, J. (2012) · Annals of Botany · doi:10.1093/aob/mcs215 · Cited by 24 · see citing works
Hu, W., Feng, Z., Chasin, L. A., & Tang, M. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m206375200 · Cited by 22 · see citing works
Feng, Z. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg808 · Cited by 17 · see citing works
Jin, D. J., Zhou, Y. N., Shaw, G., & Ji, X. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.03.003 · Cited by 15 · see citing works
A Guide to the Genetics of Psychiatric Disease
Hough, C. J., & Ursano, R. J. (2006) · Psychiatry · doi:10.1521/psyc.2006.69.1.1 · Cited by 12 · see citing works
Żabka, A., Krajewski, K., Polit, J. T., Bernasinska-Slomczewska, J., & Maszewski, J. (2020) · Plant Cell Reports · doi:10.1007/s00299-020-02545-9 · Cited by 11 · see citing works
Phosphorus containing analogues of SAHA as inhibitors of HDACs
Pun, M. D., Wu, H.-H., Olatunji, F. P., Kesic, B. N., Peters, J. W., & Berkman, C. E. (2022) · Journal of Enzyme Inhibition and Medicinal Chemistry · doi:10.1080/14756366.2022.2063281 · Cited by 11 · see citing works
Dorosz, J., Olsen, L., Seger, S. T., Steinhauer, C., Bouras, G., Helgstrand, C., Wiuf, A., & Gajhede, M. (2017) · ChemBioChem · doi:10.1002/cbic.201700109 · Cited by 10 · see citing works
Dirksen, E. H. C., Pinkse, M. W. H., Rijkers, D. T. S., Cloos, J. J., Liskamp, R. M. J., Slijper, M., & Heck, A. J. R. (2006) · Journal of Proteome Research · doi:10.1021/pr060278b · Cited by 8 · see citing works
Expression of DNMTs and H3K9ac in Ameloblastoma and Ameloblastic Carcinoma
do Amaral‐Silva, G. K., Morais, T. M. D. L., Wagner, V. P., Martins, M. D., Fregnani, E. R., Soares, F. A., Rocha, A. C., Pontes, H. A. R., Santos‐Silva, A. R., & Vargas, P. A. (2021) · Frontiers in Oral Health · doi:10.3389/froh.2021.751162 · Cited by 7 · see citing works
Son, M., Jun, H.-I., Lee, K., Demple, B., & Sung, J. (2009) · Journal of Toxicology and Environmental Health · doi:10.1080/15287390903212402 · Cited by 7 · see citing works
Effects of Valproic Acid on Radiation-Induced Chromosomal Aberrations in Human Lymphocytes
Tomaso, M. V. D., Grégoire, E., & Martínez‐López, W. (2017) · Genome Integrity · doi:10.4103/2041-9414.198909 · Cited by 6 · see citing works
Nonequilibrium polymer models for chromatin
Forte, G., Brackley, C. A., Gilbert, N., & Marenduzzo, D. (2026) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2025.102426 · Cited by 4 · see citing works
Chapter 5 Biochemical Analyses of Nuclear Receptor‐Dependent Transcription with Chromatin Templates
Ruhl, D. D., & Kraus, W. L. (2009) · Progress in molecular biology and translational science · doi:10.1016/s1877-1173(09)87005-1 · Cited by 3 · see citing works
Epigenetic regulons in Alzheimer's disease
Raval, M., Mishra, S., & Tiwari, A. K. (2023) · Progress in molecular biology and translational science · doi:10.1016/bs.pmbts.2023.01.012 · Cited by 2 · see citing works
Anand, S., Kumar, S., Kumari, K., & Azad, G. K. (2024) · Biologia · doi:10.1007/s11756-024-01653-1 · Cited by 1 · see citing works
The Genomics of Stress Response in Fission Yeast
Wilhelm, B. T., & Bähler, J. (2006) · Springer eBooks · doi:10.1007/3-540-30809-1_6 · Cited by 1 · see citing works
Resource Letter: Bio-molecular Nano-machines: where Physics, Chemistry, Biology and Technology meetPreprint
Chowdhury, D. (2008) · arXiv (Cornell University) · doi:10.48550/arxiv.0807.2731 · Cited by 2 · see citing works
Shidlovskii, Y. V., & Nabirochkina, E. N. (2005) · Russian Journal of Genetics · doi:10.1007/s11177-005-0151-4
Wang, R., Li, Q., Helfer, C. M., Jiao, J., & You, J. (2012)
Differential analysis of image-based chromatin tracing data with Dory
Ma, Z., Mp, L., Wang, S., Wang, S. S., & Zang, C. (2026) · Genome biology · doi:10.1186/s13059-026-04264-y
Functional studies of RNA polymerase II-dependent transcription in yeast Saccharomyces cerevisiae
Tronnersjö, S. (2006) · Epsilon Open Archive (Sveriges lantbruksuniversitet biblioteket (Swedish University of Agricultural Sciences))
- Authors
- Morales, V., Giamarchi, C., Chailleux, C., Moro, F., Marsaud, V., Le Ricousse, S., & Richard-Foy, H.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Venue
- Biochimie
- Publisher
- Elsevier BV
- Published
- 2001-11
- Volume
- 83
- Issue
- 11-12
- Pages
- 1029-1039
- ISSN
- 0037-9042 (ISSN-L)
- 0300-9084
- OpenAlex
- W1966921819
- Cited by
- 65
- References
- 56
- Citations by year
- 2026: 2 · 2024: 1 · 2023: 1 · 2022: 1 · 2021: 2 · 2020: 7 · 2019: 1 · 2018: 1 · 2017: 2 · 2015: 3 · 2014: 2 · 2013: 1 · 2012: 4
- FWCI
- 0.30
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochimie (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Keywords
- chromatin structure, chromatin dynamics, nucleosome, chromatin fiber, histone modifications, histone acetylation, histone deacetylation, histone methylation, histone kinase, chromatin remodeling, DNA replication, DNA repair, DNA recombination, transcription, DNA damage
- MeSH terms
- Acetyltransferases, Animals, Chromatin, DNA Damage, DNA Repair, DNA Replication, Histone Deacetylases, Histones, Humans, Models, Molecular, Nucleic Acid Conformation, Nucleosomes, Protein Processing, Post-Translational, Recombination, Genetic, Transcription, Genetic, Yeasts, Saccharomyces cerevisiae Proteins, Histone Acetyltransferases
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