The Structure of JNK3 in Complex with Small Molecule Inhibitors
Open accessAbstract
The c-Jun terminal kinases (JNKs) are members of the mitogen-activated protein (MAP) kinase family and regulate signal transduction in response to environmental stress. Activation of JNK3, a neuronal-specific isoform, has been associated with neurological damage, and as such, JNK3 may represent an attractive target for the treatment of neurological disorders. The MAP kinases share between 50% and 80% sequence identity. In order to obtain efficacious and safe compounds, it is necessary to address the issues of potency and selectivity. We report here four crystal structures of JNK3 in complex with three different classes of inhibitors. These structures provide a clear picture of the interactions that each class of compound made with the kinase. Knowledge of the atomic interactions involved in these diverse binding modes provides a platform for structure-guided modification of these compounds, or the de novo design of novel inhibitors that could satisfy the need for potency and selectivity.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The structure of JNK3 in complex with SP600125 has been reported (PDB entry 1PMV).
“Recently, the structure of JNK3 in complex with SP600125 was reported (PDB entry 1PMV; Scapin et al , 2003).”
From Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125 (2004) · cites this paper as Scapin et al , 2003
Cites
[20] Processing of X-ray diffraction data collected in oscillation mode
Otwinowski, Z., & Minor, W. (1997) · Methods in Enzymology · doi:10.1016/s0076-6879(97)76066-x · Cited by 33,475 · see citing works
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse‐Kunstleve, R. W., Jiang, J., Kuszewski, J. J., Nilges, M., Pannu, N., et al. (1998) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444998003254 · Cited by 15,720 · see citing works
Jones, T. A., Zou, J.-Y., Cowan, S. W., & Kjeldgaard, M. (1991) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767390010224 · Cited by 12,650 · see citing works
Mammalian MAP kinase signalling cascades
Chang, L., & Karin, M. (2001) · Nature · doi:10.1038/35065000 · Cited by 5,118 · see citing works
AMoRe: an automated package for molecular replacement
Navaza, J. (1994) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767393007597 · Cited by 4,941 · see citing works
(1993) · doi:10.1093/oso/9780198557883.001.0001 · Cited by 1,998 · see citing works
Structural Mechanism for STI-571 Inhibition of Abelson Tyrosine Kinase
Schindler, T. H., Bornmann, W. G., Pellicena, P., Miller, W. T., Clarkson, B., & Kuriyan, J. (2000) · Science · doi:10.1126/science.289.5486.1938 · Cited by 1,785 · see citing works
Selective interaction of JNK protein kinase isoforms with transcription factors.
Gupta, S., Barrett, T., Whitmarsh, A. J., Cavanagh, J., Sluss, H. K., Dérijard, B., & Davis, R. J. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00636.x · Cited by 1,341 · see citing works
Absence of excitotoxicity-induced apoptosis in the hippocampus of mice lacking the Jnk3 gene
Yang, D. D., Kuan, C.-Y., Whitmarsh, A. J., Rinócn, M., Zheng, T. S., Davis, R. J., RAKIC, P. T., & Flavell, R. A. (1997) · Nature · doi:10.1038/39899 · Cited by 1,230 · see citing works
Mohammadi, M., McMahon, G., Sun, L., Tang, C., Hirth, P., Yeh, B. K., Hubbard, S. R., & Schlessinger, J. (1997) · Science · doi:10.1126/science.276.5314.955 · Cited by 1,099 · see citing works
Estus, S., Zaks, W. J., Freeman, R. S., Gruda, M. C., Bravo, R., & Johnson, E. M. (1994) · The Journal of Cell Biology · doi:10.1083/jcb.127.6.1717 · Cited by 820 · see citing works
A c-jun dominant negative mutant protects sympathetic neurons against programmed cell death
Ham, J., Babij, C., Whitfield, J. R., Pfarr, C. M., Lallemand, D., Yaniv, M., & Rubin, L. L. (1995) · Neuron · doi:10.1016/0896-6273(95)90331-3 · Cited by 796 · see citing works
Han, Z., Boyle, D. L., Chang, L., Bennett, B. L., Karin, M., Yang, L., Manning, A. M., & Firestein, G. S. (2001) · Journal of Clinical Investigation · doi:10.1172/jci12466 · Cited by 781 · see citing works
Kallunki, T., Su, B., Tsigelny, I., Sluss, H. K., Dérijard, B., Moore, G., Davis, R., & Karin, M. (1994) · Genes & Development · doi:10.1101/gad.8.24.2996 · Cited by 642 · see citing works
Carson, M. (1997) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(97)77027-7 · Cited by 510 · see citing works
[10] Electron-density map interpretation
Jones, T. A., & Kjeldgaard, M. (1997) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(97)77012-5 · Cited by 507 · see citing works
Structural basis of inhibitor selectivity in MAP kinases
Wang, Z., Canagarajah, B. J., Boehm, J. C., Kassisà, S., Cobb, M. H., Young, P. R., Abdel‐Meguid, S. S., Adams, J. L., & Goldsmith, E. J. (1998) · Structure · doi:10.1016/s0969-2126(98)00113-0 · Cited by 426 · see citing works
Rice, L. M., & Brünger, A. T. (1994) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.340190403 · Cited by 369 · see citing works
Chemical Inhibitors of Protein Kinases
Bridges, A. J. (2001) · Chemical Reviews · doi:10.1021/cr000250y · Cited by 323 · see citing works
Eyers, P. A., Craxton, M., Morricel, N., Cohen, P., & Goedert, M. (1998) · Chemistry & Biology · doi:10.1016/s1074-5521(98)90170-3 · Cited by 310 · see citing works
The structural basis for the specificity of pyridinylimidazole inhibitors of p38 MAP kinase
Wilson, K. P., McCaffrey, P. G., Hsiao, K., Pazhanisamy, S., Galullo, V., Bemis, G. W., Fitzgibbon, M. J., Caron, P. R., Murcko, M. A., & Su, M. S. S. (1997) · Chemistry & Biology · doi:10.1016/s1074-5521(97)90194-0 · Cited by 275 · see citing works
Saporito, M. S., Brown, E. M., Miller, M. S., & Carswell, S. (1999) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1016/s0022-3565(24)37972-8 · Cited by 266 · see citing works
Zhu, X., Kim, J. L., Newcomb, J. R., Rose, P., Stover, D. R., Toledo, L. M., Zhao, H., & Morgenstern, K. A. (1999) · Structure · doi:10.1016/s0969-2126(99)80086-0 · Cited by 257 · see citing works
Xia, X., Harding, T. A., Weller, M., Bieneman, A., Uney, J. B., & Schulz, J. B. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.181182298 · Cited by 232 · see citing works
p493F12 kinase: A novel MAP kinase expressed in a subset of neurons in the human nervous system
Mohit, A. A., Martin, J. H., & Miller, C. A. (1995) · Neuron · doi:10.1016/0896-6273(95)90241-4 · Cited by 206 · see citing works
Crystal structure of JNK3: a kinase implicated in neuronal apoptosis
Xie, X., Gu, Y., Fox, T., Coll, J. T., Fleming, M. A., Markland, W., Caron, P. R., Wilson, K. P., & Su, M. S.-S. (1998) · Structure · doi:10.1016/s0969-2126(98)00100-2 · Cited by 198 · see citing works
Liverton, N. J., Butcher, J. W., Claiborne, C. F., Claremon, D. A., Libby, B. E., Nguyen, K. T., Pitzenberger, S. M., Selnick, H. G., Smith, G. R., Tebben, A. J., et al. (1999) · Journal of Medicinal Chemistry · doi:10.1021/jm9805236 · Cited by 197 · see citing works
Mechanism-based design of a protein kinase inhibitor.
Hubbard, S. R., Cole, P. A., Parang, K., Till, J. H., Ablooglu, A. J., & Kohanski, R. A. (2001) · Nature Structural Biology · doi:10.1038/83028 · Cited by 192 · see citing works
Maroney, A. C., Finn, J. P., Bozyczko‐Coyne, D., O’Kane, T. M., Neff, N. T., Tolkovsky, A. M., Park, D. S., Yan, C. Y. I., Troy, C. M., & Greene, L. A. (1999) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.1999.01901.x · Cited by 190 · see citing works
Structural basis for p38α MAP kinase quinazolinone and pyridol-pyrimidine inhibitor specificity
Fitzgerald, C. E., Patel, S. B., Becker, J. W., Cameron, P. M., Zaller, D. M., Pikounis, V. B., O’Keefe, S. J., & Scapin, G. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb949 · Cited by 182 · see citing works
Self-citationThe Structure-Based Design of ATP-Site Directed Protein Kinase Inhibitors
Toledo, L. M., LYDON, N. B., & Elbaum, D. (1999) · Current Medicinal Chemistry · doi:10.2174/092986730609220401150028 · Cited by 177 · see citing works
Developmental expression in the mouse nervous system of the p493F12 SAP kinase
Martin, J. H., Mohit, A. A., & Miller, C. A. (1996) · Molecular Brain Research · doi:10.1016/0169-328x(95)00181-q · Cited by 136 · see citing works
Structural biology in drug design: selective protein kinase inhibitors
Scapin, G. (2002) · Drug Discovery Today · doi:10.1016/s1359-6446(02)02290-0 · Cited by 109 · see citing works
Self-citationStructure-based design of cyclin-dependent kinase inhibitors
Davies, T. G., Pratt, D. J., Endicott, J., Johnson, L. N., & Noble, M. E. M. (2002) · Pharmacology & Therapeutics · doi:10.1016/s0163-7258(02)00182-1 · Cited by 97 · see citing works
Molecular Basis for p38 Protein Kinase Inhibitor Specificity
Lisnock, J., Tebben, A., Frantz, B., O’Neill, E. A., Croft, G. F., O’Keefe, S. J., Li, B., Hacker, C., de Laszlo, S. E., Smith, A. J., et al. (1998) · Biochemistry · doi:10.1021/bi981591x · Cited by 95 · see citing works
Self-citationBoehm, J. C., & Adams, J. L. (2000) · Expert Opinion on Therapeutic Patents · doi:10.1517/13543776.10.1.25 · Cited by 80 · see citing works
Lisnock, J., Griffin, P., Calaycay, J., Frantz, B., Parsons, J., O'Keefe, S. J., & LoGrasso, P. (2000) · Biochemistry · doi:10.1021/bi992410+ · Cited by 79 · see citing works
Self-citationProtein kinase inhibitors: emerging pharmacophores 1997 - 2000
Dumas, J. (2001) · Expert Opinion on Therapeutic Patents · doi:10.1517/13543776.11.3.405 · Cited by 71 · see citing works
Protein kinase inhibitors: structural determinants for target specificity.
McMahon, G., Sun, L., Liang, C., & Tang, C. (1998) · PubMed · Cited by 32 · see citing works
Inhibitors of the JNK signaling pathway
Harper, S. J., & Lo Grasso, P. (2001) · Drugs of the Future · doi:10.1358/dof.2001.026.10.858715 · Cited by 13 · see citing works
Self-citationProtein kinase antagonists: interim challenges and issues.
Ea, S. (2000) · PubMed · Cited by 11 · see citing works
Kleemann, A. (2014) · Ullmann's Encyclopedia of Industrial Chemistry · doi:10.1002/14356007.r22_r01 · Cited by 2 · see citing works
Laurence, A. D. J., Gadina, M., Schwartzberg, P. L., & O’Shea, J. J. (2023) · Elsevier eBooks · doi:10.1016/b978-0-7020-8165-1.00085-x · Cited by 1 · see citing works
Rinehart (2000) · doi:10.1002/(sici)1098-1128(200001)20:1
Flagged first, then by citations
3 of the 47 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Diverse, High-Quality Test Set for the Validation of Protein−Ligand Docking Performance
Hartshorn, M. J., Verdonk, M. L., Chessari, G., Brewerton, S. C., Mooij, W. T. M., Mortenson, P. N., & Murray, C. W. (2007) · Journal of Medicinal Chemistry · doi:10.1021/jm061277y · Cited by 623 · see citing works
Uses for JNK: the Many and Varied Substrates of the c-Jun N-Terminal Kinases
Bogoyevitch, M. A., & Kobe, B. (2006) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00025-06 · Cited by 572 · see citing works
Halogen Bonding—A Novel Interaction for Rational Drug Design?
Lu, Y., Shi, T., Wang, Y., Yang, H., Yan, X., Luo, X., Jiang, H., & Zhu, W. (2009) · Journal of Medicinal Chemistry · doi:10.1021/jm9000133 · Cited by 562 · see citing works
Through the “Gatekeeper Door”: Exploiting the Active Kinase Conformation
Zuccotto, F., Ardini, E., Casale, E., & Angiolini, M. (2009) · Journal of Medicinal Chemistry · doi:10.1021/jm901443h · Cited by 537 · see citing works
c-Jun N-terminal kinase (JNK) signaling: Recent advances and challenges
Bogoyevitch, M. A., Ngoei, K. R. W., Zhao, T. T., Yeap, Y. Y. C., & Ng, D. C. H. (2009) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2009.11.002 · Cited by 326 · see citing works
Gutiérrez, I. S., Lin, F.-Y., Vanommeslaeghe, K., Lemkul, J. A., Armacost, K., Brooks, C., & MacKerell, A. (2016) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2016.06.034 · Cited by 260 · see citing works
Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125
Heo, Y., Kim, S., Seo, C. I., Kim, Y. K., Sung, B., Lee, H. S., Lee, J. I., Park, S., Kim, J. H., Hwang, K. Y., et al. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600212 · Cited by 275 · see citing works
Specific pathophysiological functions of JNK isoforms in the brain
Brecht, S., Kirchhof, R., Chromik, A. M., Willesen, M. G., Nicolaus, T., Raivich, G., Wessig, J., Waetzig, V., Goetz, M. E., Claussen, M. C., et al. (2005) · European Journal of Neuroscience · doi:10.1111/j.1460-9568.2005.03857.x · Cited by 219 · see citing works
Szczepankiewicz, B. G., Kosogof, C., Nelson, L. T. J., Liu, G., Liu, B., Zhao, H., Serby, M. D., Xin, Z., Liu, M., Gum, R. J., et al. (2006) · Journal of Medicinal Chemistry · doi:10.1021/jm060199b · Cited by 163 · see citing works
Zhao, H., & Caflisch, A. (2013) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2013.08.009 · Cited by 153 · see citing works
Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis
Danzhi Huang, A., Zhou, T., Lafleur, K., Nevado, C., & Caflisch, A. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp650 · Cited by 146 · see citing works
Inhibitors of c-Jun N-terminal kinases—JuNK no more?
Bogoyevitch, M. A., & Arthur, P. G. (2007) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2007.09.013 · Cited by 129 · see citing works
Targeting JNK3 for the treatment of neurodegenerative disorders
Resnick, L., & Fennell, M. (2004) · Drug Discovery Today · doi:10.1016/s1359-6446(04)03251-9 · Cited by 128 · see citing works
Gaillard, P., Jeanclaude-Etter, I., Ardissone, V., Arkinstall, S., Cambet, Y., Camps, M., Chabert, C., Church, D. J., Cirillo, R., Gretener, D., et al. (2005) · Journal of Medicinal Chemistry · doi:10.1021/jm0310986 · Cited by 125 · see citing works
Laufer, S., Domeyer, D. M., Scior, T., Albrecht, W., & Hauser, D. R. J. (2005) · Journal of Medicinal Chemistry · doi:10.1021/jm0408767 · Cited by 105 · see citing works
Inhibitors of c-Jun N-Terminal Kinases: An Update
Koch, P., Gehringer, M., & Laufer, S. (2014) · Journal of Medicinal Chemistry · doi:10.1021/jm501212r · Cited by 103 · see citing works
Uitdehaag, J. C. M., Verkaar, F., Alwan, H. A. J., de Man, J., Buijsman, R. C., & Zaman, G. J. R. (2012) · British Journal of Pharmacology · doi:10.1111/j.1476-5381.2012.01859.x · Cited by 101 · see citing works
Mitogen activated protein kinases in renal fibrosis
Nikolic-Paterson, D. J. (2009) · Frontiers in Bioscience-Scholar · doi:10.2741/s17 · Cited by 96 · see citing works
Angell, R. M., Atkinson, F. L., Brown, M. J. B., Chuang, T. T., Christopher, J. A., Cichy-Knight, M. A., Dunn, A. K., Hightower, K. E., Malkakorpi, S., Musgrave, J. R., et al. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.12.003 · Cited by 95 · see citing works
C−X···H Contacts in Biomolecular Systems: How They Contribute to Protein−Ligand Binding Affinity
Lu, Y., Wang, Y., Xu, Z., Yan, X., Luo, X., Jiang, H., & Zhu, W. (2009) · The Journal of Physical Chemistry B · doi:10.1021/jp906352e · Cited by 94 · see citing works
Small molecules from natural sources, targeting signaling pathways in diabetes
Liu, Q., Chen, L., Hu, L., Guo, Y., & Shen, X. (2010) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2010.06.004 · Cited by 86 · see citing works
Backes, A. C., Zech, B., Felber, B., Klebl, B., & Müller, G. (2008) · Expert Opinion on Drug Discovery · doi:10.1517/17460440802579975 · Cited by 83 · see citing works
Lange, A., Günther, M., Büttner, F. M., Zimmermann, M. O., Heidrich, J., Hennig, S., Zahn, S., Schall, C., Sievers‐Engler, A., Ansideri, F., et al. (2015) · Journal of the American Chemical Society · doi:10.1021/jacs.5b07090 · Cited by 82 · see citing works
Comess, K. M., Sun, C. C., Abad‐Zapatero, C., Goedken, E. R., Gum, R. J., Borhani, D. W., Argiriadi, M. A., Groebe, D. R., Jia, Y., Clampit, J. E., et al. (2010) · ACS Chemical Biology · doi:10.1021/cb1002619 · Cited by 79 · see citing works
Mitogen activated protein kinase inhibitors: where are we now and where are we going?
Sweeney, S. E., & Firestein, G. S. (2006) · Annals of the Rheumatic Diseases · doi:10.1136/ard.2006.058388 · Cited by 78 · see citing works
Small Molecule JNK (c-Jun N-Terminal Kinase) Inhibitors
Siddiqui, M. A., & Reddy, P. A. (2010) · Journal of Medicinal Chemistry · doi:10.1021/jm9003279 · Cited by 76 · see citing works
Functional Classification of Protein Kinase Binding Sites Using Cavbase
Kühn, D., Weskamp, N., Hüllermeier, E., & Klebe, G. (2007) · ChemMedChem · doi:10.1002/cmdc.200700075 · Cited by 74 · see citing works
Kamenecka, T., Habel, J. E., Duckett, D. R., Chen, W., Ling, Y. Y., Frąckowiak, B., Jiang, R., Shin, Y., Song, X., & LoGrasso, P. V. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m809430200 · Cited by 72 · see citing works
Self-citationMinimizing false positives in kinase virtual screens
Perola, E. (2006) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.21002 · Cited by 72 · see citing works
Messoussi, A., Feneyrolles, C., Bros, A., Deroide, A., Daydé-Cazals, B., Chevé, G., Hijfte, N. V., Fauvel, B., Bougrin, K., & Yasri, A. (2014) · Chemistry & Biology · doi:10.1016/j.chembiol.2014.09.007 · Cited by 70 · see citing works
Chu, M. L.-H., Chavas, L. M. G., Douglas, K. T., Eyers, P. A., & Tabernero, L. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m803026200 · Cited by 70 · see citing works
Design and synthesis of 6-anilinoindazoles as selective inhibitors of c-Jun N-terminal kinase-3
Swahn, B., Huerta, F. F., Kallin, E., Malmström, J., Weigelt, T., Viklund, J., Womack, P., Xue, Y., & Öhberg, L. M. (2005) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2005.06.083 · Cited by 70 · see citing works
Ramin, M., Azizi, P., Motamedi, F., Haghparast, A., & Khodagholi, F. (2010) · Behavioural Brain Research · doi:10.1016/j.bbr.2010.11.017 · Cited by 69 · see citing works
Kamenecka, T., Jiang, R., Song, X., Duckett, D. R., Chen, W., Ling, Y. Y., Habel, J. E., Laughlin, J. D., Chambers, J. W., Figuera-Losada, M., et al. (2009) · Journal of Medicinal Chemistry · doi:10.1021/jm901351f · Cited by 68 · see citing works
Self-citationSynthesis and SAR of aminopyrimidines as novel c-Jun N-terminal kinase (JNK) inhibitors
Alam, M., Beevers, R. E., Ceska, T., Davenport, R. J., Dickson, K. M., Fortunato, M., Gowers, L., Haughan, A. F., James, L. A., Jones, M. W., et al. (2007) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2007.03.078 · Cited by 62 · see citing works
Rückle, T., Biamonte, M. A., Grippi-Vallotton, T., Arkinstall, S., Cambet, Y., Camps, M., Chabert, C., Church, D. J., Halazy, S., Jiang, X., et al. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm031112e · Cited by 63 · see citing works
Stogios, P. J., Spanogiannopoulos, P., Evdokimova, E., Egorova, O., Shakya, T., Todorovic, N., Capretta, A. A., Wright, G. D., & Savchenko, A. V. (2013) · Biochemical Journal · doi:10.1042/bj20130317 · Cited by 60 · see citing works
JNK signaling pathway in metabolic disorders: An emerging therapeutic target
Garg, R., Kumariya, S., Katekar, R. A., Verma, S., Goand, U. K., & Gayen, J. R. (2021) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2021.174079 · Cited by 57 · see citing works
Graczyk, P. P., Khan, A., Bhatia, G. S., Palmer, V. H., Medland, D., Numata, H., Oinuma, H., Catchick, J., Dunne, A., Ellis, M. V., et al. (2005) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2005.07.076 · Cited by 56 · see citing works
Tri- and Tetrasubstituted Pyridinylimidazoles as Covalent Inhibitors of c-Jun N-Terminal Kinase 3
Muth, F., El‐Gokha, A., Ansideri, F., Eitel, M., Döring, E., Sievers‐Engler, A., Lange, A., Boeckler, F. M., Lämmerhofer, M., Koch, P., et al. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.6b01180 · Cited by 54 · see citing works
Implications for selectivity of 3,4-diarylquinolinones as p38αMAP kinase inhibitors
Peifer, C., Urich, R., Schattel, V., Abadleh, M. M., Röttig, M., Kohlbacher, O., & Laufer, S. (2008) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2007.12.073 · Cited by 53 · see citing works
Swahn, B., Xue, Y., Arzel, E., Kallin, E., Magnus, A. S., Plobeck, N. A., & Viklund, J. (2005) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2005.11.039 · Cited by 53 · see citing works
Liu, M., Wang, S., Clampit, J. E., Gum, R. J., Haasch, D. L., Rondinone, C. M., Trevillyan, J. M., Abad‐Zapatero, C., Fry, E. H., Sham, H. L., et al. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.10.093 · Cited by 53 · see citing works
Ibrahim, M. A. A., Abdelrahman, A. H. M., & Hegazy, M. F. (2020) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2020.1791958 · Cited by 52 · see citing works
Protein Kinase Inhibitors: Structural Insights Into Selectivity
Thaimattam, R., Banerjee, R., Miglani, R., & Javed Iqbal, M. (2007) · Current Pharmaceutical Design · doi:10.2174/138161207781757042 · Cited by 52 · see citing works
Automating crystallographic structure solution and refinement of protein–ligand complexes
Echols, N., Moriarty, N. W., Klei, H. E., Afonine, P. V., Bunkòczi, G., Headd, J. J., McCoy, A. J., Oeffner, R. D., Read, R. J., Terwilliger, T. C., et al. (2013) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s139900471302748x · Cited by 50 · see citing works
How many kinases are druggable? A review of our current understanding
Anderson, B. M., Rosston, P., Ong, H. W., Hossain, M. A., Davis‐Gilbert, Z. W., & Drewry, D. H. (2023) · Biochemical Journal · doi:10.1042/bcj20220217 · Cited by 49 · see citing works
c-Jun N-Terminal Kinase Inhibitors as Potential Leads for New Therapeutics for Alzheimer’s Diseases
Rehfeldt, S. C. H., Majolo, F., Goettert, M. I., & Laufer, S. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21249677 · Cited by 46 · see citing works
Signal Transduction Therapy with Rationally Designed Kinase Inhibitors
Kéri, G., Őrfi, L., Erös, D., Hegymegi-Barakonyi, B., Szántai-Kis, C., Horvath, Z., Wáczek, F., Jeno, M., Szabadkai, I., Pató, J., et al. (2006) · Current Signal Transduction Therapy · doi:10.2174/157436206775269190 · Cited by 49 · see citing works
Polgár, T., & Keserű, G. M. (2006) · Journal of Chemical Information and Modeling · doi:10.1021/ci050412x · Cited by 44 · see citing works
Goettert, M. I., Schattel, V., Koch, P., Merfort, I., & Laufer, S. (2010) · ChemBioChem · doi:10.1002/cbic.201000487 · Cited by 43 · see citing works
Probst, G. D., Bowers, S., Sealy, J. M., Truong, A. P., Hom, R. K., Galemmo, R. A., Konradi, A. W., Sham, H. L., Quincy, D. A., Pan, H., et al. (2010) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2010.11.010 · Cited by 43 · see citing works
Therapeutic promise of JNK ATP-noncompetitive inhibitors
Bogoyevitch, M. A. (2005) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2005.03.005 · Cited by 43 · see citing works
Blocking UV‐Induced eIF2α Phosphorylation with Small Molecule Inhibitors of GCN2
Robert, F., Williams, C., Yan, Y., Donohue, E., Cencic, R., Burley, S. K., & Pelletier, J. (2009) · Chemical Biology & Drug Design · doi:10.1111/j.1747-0285.2009.00827.x · Cited by 40 · see citing works
Bowers, S., Truong, A. P., Neitz, R. J., Neitzel, M. L., Probst, G. D., Hom, R. K., Peterson, B. T., Galemmo, R. A., Konradi, A. W., Sham, H. L., et al. (2011) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2011.01.046 · Cited by 39 · see citing works
3,5-Disubstituted quinolines as novel c-Jun N-terminal kinase inhibitors
Jiang, R., Duckett, D. R., Chen, W., Habel, J. E., Ling, Y. Y., LoGrasso, P. V., & Kamenecka, T. M. (2007) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2007.08.054 · Cited by 39 · see citing works
Self-citation1-Aryl-3,4-dihydroisoquinoline inhibitors of JNK3
Christopher, J. A., Atkinson, F. L., Bax, B. D., Brown, M. J. B., Champigny, A. C., Chuang, T. T., Jones, E. J., Mosley, J. E., & Musgrave, J. R. (2009) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2009.02.098 · Cited by 38 · see citing works
Biphenyl amide p38 kinase inhibitors 1: Discovery and binding mode
Angell, R. M., Bamborough, P., Cleasby, A., Cockerill, S. G., Jones, K. L., Mooney, C. J., Somers, D. O., & Walker, A. L. (2007) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2007.10.076 · Cited by 38 · see citing works
New insights into the structural dynamics of the kinase JNK3
Mishra, P., & Günther, S. (2018) · Scientific Reports · doi:10.1038/s41598-018-27867-3 · Cited by 37 · see citing works
Altan, Z. M., & Fenteany, G. (2004) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2004.07.079 · Cited by 35 · see citing works
Ikram, N., Mirza, M. U., Vanmeert, M., Froeyen, M., Salo‐Ahen, O. M. H., Tahir, M., Qazi, A. M., & Ahmad, S. (2019) · Biomolecules · doi:10.3390/biom9040124 · Cited by 34 · see citing works
Anatomy of Fingerprint Search Calculations on Structurally Diverse Sets of Active Compounds
Godden, J. W., Stahura, F. L., & Bajorath, J. (2005) · Journal of Chemical Information and Modeling · doi:10.1021/ci050276w · Cited by 34 · see citing works
Zulfiqar, Z., Shah, F. A., Shafique, S., Alattar, A., Ali, T., Alvi, A. M., Rashid, S., & Li, S. (2020) · Journal of Inflammation Research · doi:10.2147/jir.s284471 · Cited by 32 · see citing works
RetractedShaikh, A. R., Ismael, M., Carpio, C. A. D., Tsuboi, H., Koyama, M., Endou, A., Kubo, M., Brocławik, E., & Miyamoto, A. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.06.039 · Cited by 32 · see citing works
Liu, M., Xin, Z., Clampit, J. E., Wang, S., Gum, R. J., Haasch, D. L., Trevillyan, J. M., Abad‐Zapatero, C., Fry, E. H., Sham, H. L., et al. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.02.046 · Cited by 31 · see citing works
Ansideri, F., Macedo, J. T., Eitel, M., El‐Gokha, A., Zinad, D. S., Scarpellini, C., Kudolo, M., Schollmeyer, D., Boeckler, F. M., Blaum, B. S., et al. (2018) · ACS Omega · doi:10.1021/acsomega.8b00668 · Cited by 30 · see citing works
Arrestin-Dependent Activation of JNK Family Kinases
Zhan, X., Kook, S., Gurevich, E. V., & Gurevich, V. V. (2013) · Handbook of experimental pharmacology · doi:10.1007/978-3-642-41199-1_13 · Cited by 27 · see citing works
Soliva, R., Gelpí, J. L., Almansa, C., Virgili, M., & Orozco, M. (2006) · Journal of Medicinal Chemistry · doi:10.1021/jm061073h · Cited by 25 · see citing works
Figuera-Losada, M., & LoGrasso, P. V. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.323766 · Cited by 23 · see citing works
Self-citationTuffaha, G. O., Hatmal, M. M., & Taha, M. O. (2019) · Journal of Molecular Graphics and Modelling · doi:10.1016/j.jmgm.2019.05.015 · Cited by 23 · see citing works
Nakaniwa, T., Fukada, H., Inoue, T., Gouda, M., Nakai, R., Kirii, Y., Adachi, M., Tamada, T., Segawa, S.-I., Kuroki, R., et al. (2012) · Biochemistry · doi:10.1021/bi300918w · Cited by 23 · see citing works
Ansideri, F., Lange, A., El‐Gokha, A., Boeckler, F. M., & Koch, P. (2016) · Analytical Biochemistry · doi:10.1016/j.ab.2016.02.018 · Cited by 22 · see citing works
Sharma, P., & Ghoshal, N. (2006) · Journal of Chemical Information and Modeling · doi:10.1021/ci060057q · Cited by 22 · see citing works
Goettert, M. I., Luik, S., Graeser, R., & Laufer, S. (2011) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2011.01.014 · Cited by 21 · see citing works
Liu, G., Zhao, H., Liu, B., Xin, Z., Liu, M., Kosogof, C., Szczepankiewicz, B. G., Wang, S., Clampit, J. E., Gum, R. J., et al. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.08.097 · Cited by 21 · see citing works
Aladinskiy, V., Kruse, C. G., Qin, L., Babin, E., Fan, Y., Andreev, G., Zhao, H., Fu, Y., Zhang, M., Ivanenkov, Y. A., et al. (2024) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.4c01580 · Cited by 19 · see citing works
Ergen, N. Z., Doğanay, G. D., Shearman, R. C., & Budak, H. (2007) · Gene · doi:10.1016/j.gene.2007.02.005 · Cited by 19 · see citing works
The use of biophysical methods increases success in obtaining liganded crystal structures
Chung, C. (2006) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444906051869 · Cited by 19 · see citing works
Frusciante, L., Geminiani, M., Shabab, B., Olmastroni, T., Roncucci, N., Mastroeni, P., Salvini, L., Lamponi, S., Trezza, A., & Santucci, A. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26020548 · Cited by 20 · see citing works
Ijjaali, I., Petitet, F., Dubus, E., Barberan, O., & Michel, A. G. (2007) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2007.03.062 · Cited by 18 · see citing works
Tang, Z., Jiang, S., Du, R., Petri, E. T., El-Telbany, A., Chan, P. S. O., Kijima, T., Dietrich, S., Matsui, K., Kobayashi, M., et al. (2008) · Oncogene · doi:10.1038/onc.2008.411 · Cited by 18 · see citing works
Custódio, J. M. F., Moura, A. F., de Moraes, M. O., Pérez, C. N., & Napolitano, H. B. (2020) · New Journal of Chemistry · doi:10.1039/c9nj05612b · Cited by 17 · see citing works
Crystallization of MAP kinases
Lee, S., Zhou, T., & Goldsmith, E. J. (2006) · Methods · doi:10.1016/j.ymeth.2006.05.003 · Cited by 17 · see citing works
Bryliński, M., & Skolnick, J. (2010) · Molecular Pharmaceutics · doi:10.1021/mp1002976 · Cited by 16 · see citing works
Novel Tryptanthrin Derivatives with Selectivity as c–Jun N–Terminal Kinase (JNK) 3 Inhibitors
Schepetkin, I. A., Karpenko, O. S., Kovrizhina, A. R., Kirpotina, L. N., Khlebnikov, А. I., Chekal, S. I., Radudik, A. V., Shybinska, M. O., & Quinn, M. T. (2023) · Molecules · doi:10.3390/molecules28124806 · Cited by 15 · see citing works
Chen, Q., Tu, Y., Mak, S., Chen, J., Lu, J., Chen, C., Yang, X., Wang, S., Wen, S., Ma, S., et al. (2020) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2020.173361 · Cited by 15 · see citing works
Considerations of Protein Subpockets in Fragment‐Based Drug Design
Bartolowits, M. D., & Davisson, V. J. (2015) · Chemical Biology & Drug Design · doi:10.1111/cbdd.12631 · Cited by 13 · see citing works
Suneel Kumar, B. V. S., Kotla, R., Buddiga, R., Roy, J., Singh, S. S., Gundla, R., Ravikumar, M., & Sarma, J. A. R. P. (2010) · Journal of Molecular Modeling · doi:10.1007/s00894-010-0701-0 · Cited by 14 · see citing works
Liu, G., Zhao, H., Liu, B., Xin, Z., Liu, M., Serby, M. D., Lubbers, N. L., Widomski, D. L., Polakowski, J. S., Beno, D. W. A., et al. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.10.013 · Cited by 14 · see citing works
Guo, M., Wei, J., Zhou, Y., & Qin, Q. (2016) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2016.06.009 · Cited by 13 · see citing works
Identifying New Ligands for JNK3 by Fluorescence Thermal Shift Assays and Native Mass Spectrometry
Cheng, C., Liu, M., Gao, X., Wu, D., Pu, M., Ma, J., Quinn, R. J., Xiao, Z., & Liu, Z. (2022) · ACS Omega · doi:10.1021/acsomega.2c00340 · Cited by 12 · see citing works
Frusciante, L., Nyong'a, C. N., Trezza, A., Shabab, B., Olmastroni, T., Barletta, R., Mastroeni, P., Visibelli, A., Orlandini, M., Raucci, L., et al. (2025) · Foods · doi:10.3390/foods14091523 · Cited by 11 · see citing works
Guedes, I. A., de Freitas, R. H. C. N., Cordeiro, N. D. M., do Nascimento, T. S., Valerio, T. S., Fernandes, P. D., Dardenne, L. E., & Fraga, C. A. M. (2015) · ChemMedChem · doi:10.1002/cmdc.201500266 · Cited by 11 · see citing works
Fricker, M., LoGrasso, P. V., Ellis, S., Wilkie, N. M., Hunt, P. A., & Pollack, S. J. (2005) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2005.04.013 · Cited by 11 · see citing works
Self-citationSomorjai, I. M. L., Ehebauer, M., Escrivá, H., & Garcia-Fernàndez, J. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.749806 · Cited by 7 · see citing works
Kim, H., Park, H., Jun, J., Moon, J., Oh, J., Bhujbal, S. P., & Hah, J. (2025) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2024.117209 · Cited by 10 · see citing works
Karothu, D. P., Trinath, J., Biswas, A., Sekar, K., Balaji, K. N., & Row, T. N. G. (2014) · Scientific Reports · doi:10.1038/srep07214 · Cited by 10 · see citing works
Achieving High Quality Ligand Chemistry in Protein-Ligand Crystal Structures for Drug Design
Smart, O. S., & Bricogne, G. (2015) · NATO science for peace and security series. A, Chemistry and biology · doi:10.1007/978-94-017-9719-1_13 · Cited by 10 · see citing works
Lead Generation and Optimization Based on Protein-Ligand Complementarity
Ogata, K., Isomura, T., Kawata, S., Yamashita, H., Kubodera, H., & Wodak, S. J. (2010) · Molecules · doi:10.3390/molecules15064382 · Cited by 10 · see citing works
Malami, I., Bunza, A. M., Alhassan, A. M., Muhammad, A. I., Abubakar, I. B., Yunusa, A., Waziri, P. M., & Etti, I. C. (2020) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2020.1824811 · Cited by 9 · see citing works
- Authors
- Scapin, G., Patel, S. B., Lisnock, J., Becker, J. W., & LoGrasso, P. V.
- Affiliations
- Merck & Co., Inc., Rahway, NJ, USA (United States) (US)
- Corresponding author
- Scapin, Giovanna
- ORCID
- Scapin, Giovanna
- Venue
- Chemistry & Biology
- Publisher
- Elsevier BV
- Published
- 2003-08
- Volume
- 10
- Issue
- 8
- Pages
- 705-712
- ISSN
- 1074-5521 (ISSN-L)
- OpenAlex
- W1891159913
- Cited by
- 131
- References
- 47
- Citations by year
- 2026: 4 · 2025: 7 · 2024: 5 · 2023: 4 · 2022: 2 · 2021: 2 · 2020: 7 · 2019: 2 · 2018: 3 · 2016: 7 · 2015: 4 · 2014: 4 · 2013: 4 · 2012: 6
- FWCI
- 3.56
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Chemistry & Biology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Keywords
- JNK3, c-Jun N-terminal kinase, mitogen-activated protein kinase, kinase inhibitors, small molecule inhibitors, binding mode, kinase selectivity, structure-based drug design, neurological disorders, neuroprotection
- MeSH terms
- Adenosine Triphosphate, Binding Sites, Enzyme Inhibitors, Models, Molecular, Protein Conformation, Protein-Tyrosine Kinases, Recombinant Proteins, Structure-Activity Relationship, Crystallography, X-Ray, Mitogen-Activated Protein Kinases, p38 Mitogen-Activated Protein Kinases, Mitogen-Activated Protein Kinase 10
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review