Harnessing the Ubiquitination Machinery to Target the Degradation of Specific Cellular Proteins
Open accessAbstract
The functional characterization of a specific gene, or its protein product, often relies on assessing the consequences of its elimination, usually accomplished by gene knockout, ribozyme, antisense, or RNA-mediated interference (RNAi) technologies. The selective degradation of cellular proteins is mediated primarily by the ubiquitin-proteasome pathway. Manipulation of the ubiquitin-dependent proteolytic machinery to eliminate specific gene products at the protein level has been previously attempted with some success in vitro; however, the in vivo efficacy of this approach has not yet been achieved. Here we report successful engineering of the substrate receptor of a major ubiquitin-proteolytic machinery to direct the degradation of otherwise stable cellular proteins both in yeast and in mammalian cells.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Zhou et al. described some of the earliest chimeric bioPROTACs, including a fusion consisting of full-length β-TRCP protein and an N-terminal peptide of the E7 protein of HPV-16 that degraded retinoblastoma protein (RB1) in a human osteosarcoma cell line.
“Zhou et al.210 described some of the earliest chimeric bioPROTACs, including a fusion consisting of full-length β-TRCP protein and an N-terminal peptide of the E7 protein of human papillomavirus type 16 (HPV-16) that degraded retinoblastoma protein (RB1) in a human osteosarcoma cell line.”
From PROTAC targeted protein degraders: the past is prologue (2022) · cites this paper as [210]
These studies demonstrated that the SCF E3 ligase could be redirected to degrade non-SCF targets.
“These studies demonstrated that the SCF E3 ligase could be redirected to degrade non-SCF targets.”
From PROTAC targeted protein degraders: the past is prologue (2022) · cites this paper as [210]
Cites
A simplified system for generating recombinant adenoviruses
He, T., Zhou, S., da Costa, L. T., Yu, J., Kinzler, K. W., & Vogelstein, B. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.5.2509 · Cited by 3,209 · see citing works
The human papilloma virus-16 E7-oncoprotein is able to bind to the retinoblastoma gene product
Dyson, N., Howley, P. M., Münger, K., & Harlow, E. (1989) · Science · doi:10.1126/science.2537532 · Cited by 3,017 · see citing works
Self-citationUBIQUITIN-DEPENDENT PROTEIN DEGRADATION
Hochstrasser, M. (1996) · Annual Review of Genetics · doi:10.1146/annurev.genet.30.1.405 · Cited by 1,695 · see citing works
Bai, C., Sen, P., Hofmann, K., Ma, L., Goebl, M. G., Harper, J. W., & Elledge, S. J. (1996) · Cell · doi:10.1016/s0092-8674(00)80098-7 · Cited by 1,421 · see citing works
SCF and Cullin/RING H2-Based Ubiquitin Ligases
Deshaies, R. J. (1999) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.15.1.435 · Cited by 1,238 · see citing works
Münger, K., Werness, B. A., Dyson, N. J., Phelps, W. C., Harlow, E. E., & Howley, P. M. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb08594.x · Cited by 1,204 · see citing works
Self-citationRegulation of retinoblastoma protein functions by ectopic expression of human cyclins
Hinds, P. W., Mittnacht, S., Dulić, V., Arnold, A., Reed, S. I., & Weinberg, R. A. (1992) · Cell · doi:10.1016/0092-8674(92)90249-c · Cited by 998 · see citing works
Feldman, R. M. R., Correll, C. C., Kaplan, K. B., & Deshaies, R. J. (1997) · Cell · doi:10.1016/s0092-8674(00)80404-3 · Cited by 872 · see citing works
CDC20 and CDH1 : A Family of Substrate-Specific Activators of APC-Dependent Proteolysis
Visintin, R., Prinz, S., & Amon, A. (1997) · Science · doi:10.1126/science.278.5337.460 · Cited by 812 · see citing works
Margottin-Goguet, F., Bour, S. P., Durand, H., Selig, L., Bénichou, S., Richard, V., Thomas, D., Strebel, K., & Bénarous, R. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80056-8 · Cited by 670 · see citing works
Identification of the receptor component of the IκBα–ubiquitin ligase
Yaron, A., Hatzubai, A., Davis, M., Lavon, I., Amit, S., Manning, A. M., Andersen, J., Mann, M., Mercurio, F., & Ben‐Neriah, Y. (1998) · Nature · doi:10.1038/25159 · Cited by 654 · see citing works
Phosphorylation of Sic1p by G 1 Cdk Required for Its Degradation and Entry into S Phase
Verma, R., Annan, R. S., Huddleston, M. J., Carr, S. A., Reynard, G. J., & Deshaies, R. J. (1997) · Science · doi:10.1126/science.278.5337.455 · Cited by 449 · see citing works
Dyson, N. J., Guida, P. M., Münger, K., & Harlow, E. E. (1992) · Journal of Virology · doi:10.1128/jvi.66.12.6893-6902.1992 · Cited by 385 · see citing works
Heat-Inducible Degron: a Method for Constructing Temperature-Sensitive Mutants
Dohmen, R. J., Wu, P., & Varshavsky, A. J. (1994) · Science · doi:10.1126/science.8122109 · Cited by 348 · see citing works
Jones, D. L., Thompson, D. A., & Münger, K. (1997) · Virology · doi:10.1006/viro.1997.8851 · Cited by 262 · see citing works
Zhou, P., & Howley, P. M. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80156-2 · Cited by 259 · see citing works
Self-citationCollaboration of G1 cyclins in the functional inactivation of the retinoblastoma protein.Preprint
Hatakeyama, M., Brill, J. A., Fink, G. R., & Weinberg, R. A. (1994) · Genes & Development · doi:10.1101/gad.8.15.1759 · Cited by 250 · see citing works
Targeted degradation of the retinoblastoma protein by human papillomavirus E7‐E6 fusion proteins.
Scheffner, M., Münger, K., Huibregtse, J. M., & Howley, P. M. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05307.x · Cited by 114 · see citing works
Self-citationBerezutskaya, E., Yu, B., Morozov, A., Raychaudhuri, P., & Bagchi, S. (1997) · PubMed · Cited by 110 · see citing works
Redirecting the specificity of ubiquitination by modifying ubiquitin-conjugating enzymes.
Gosink, M. M., & Vierstra, R. D. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.20.9117 · Cited by 53 · see citing works
Tiemann, F., & Hinds, P. W. (1998) · The EMBO Journal · doi:10.1093/emboj/17.4.1040 · Cited by 31 · see citing works
Flagged first, then by citations
2 of the 23 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
PROTAC targeted protein degraders: the past is prologue
Békés, M., Langley, D. R., & Crews, C. M. (2022) · Nature Reviews Drug Discovery · doi:10.1038/s41573-021-00371-6 · Cited by 3,395 · see citing works
Sakamoto, K. M., Kim, K. B., Kumagai, A., Mercurio, F., Crews, C. M., & Deshaies, R. J. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.141230798 · Cited by 2,609 · see citing works
An auxin-based degron system for the rapid depletion of proteins in nonplant cells
Nishimura, K., Fukagawa, T., Takisawa, H., Kakimoto, T., & Kanemaki, M. (2009) · Nature Methods · doi:10.1038/nmeth.1401 · Cited by 1,663 · see citing works
Themes and variations on ubiquitylation
Weissman, A. M. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35056563 · Cited by 1,472 · see citing works
Drug discovery in the ubiquitin–proteasome system
Nalepa, G., Rolfe, M., & Harper, J. W. (2006) · Nature Reviews Drug Discovery · doi:10.1038/nrd2056 · Cited by 619 · see citing works
Zhang, L., Ward, J. D., Cheng, Z., & Dernburg, A. F. (2015) · Development · doi:10.1242/dev.129635 · Cited by 559 · see citing works
Fluorescent fusion protein knockout mediated by anti-GFP nanobody
Caussinus, E., Kanca, O., & Affolter, M. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2180 · Cited by 510 · see citing works
Chemical Genetic Control of Protein Levels: Selective in Vivo Targeted Degradation
Schneekloth, J. S., Fonseca, F. N., Koldobskiy, M. A., Mandal, A., Deshaies, R. J., Sakamoto, K. M., & Crews, C. M. (2004) · Journal of the American Chemical Society · doi:10.1021/ja039025z · Cited by 502 · see citing works
A hitchhiker's guide to the cullin ubiquitin ligases: SCF and its kin
Willems, A. R., Schwab, M. G., & Tyers, M. (2004) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2004.09.027 · Cited by 461 · see citing works
Development of Protacs to Target Cancer-promoting Proteins for Ubiquitination and Degradation
Sakamoto, K. M., Kim, K. B., Verma, R., Ransick, A., Stein, B., Crews, C. M., & Deshaies, R. J. (2003) · Molecular & Cellular Proteomics · doi:10.1074/mcp.t300009-mcp200 · Cited by 425 · see citing works
Dantuma, N. P., & Bott, L. C. (2014) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2014.00070 · Cited by 336 · see citing works
The many faces of β-TrCP E3 ubiquitin ligases: reflections in the magic mirror of cancer
Fuchs, S. Y., Spiegelman, V. S., & Kumar, S. (2004) · Oncogene · doi:10.1038/sj.onc.1207389 · Cited by 311 · see citing works
The PROTAC technology in drug development
Zou, Y., Ma, D., & Wang, Y. (2019) · Cell Biochemistry and Function · doi:10.1002/cbf.3369 · Cited by 307 · see citing works
Small-Molecule Modulation of Protein Homeostasis
Burslem, G. M., & Crews, C. M. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.7b00077 · Cited by 294 · see citing works
Chemically Controlled Protein Assembly: Techniques and Applications
Fegan, A., White, B., Carlson, J., & Wagner, C. R. (2010) · Chemical Reviews · doi:10.1021/cr8002888 · Cited by 296 · see citing works
Aggregate formation inhibits proteasomal degradation of polyglutamine proteins
Verhoef, L. G. G. C. (2002) · Human Molecular Genetics · doi:10.1093/hmg/11.22.2689 · Cited by 289 · see citing works
Targeting proteins for degradation.
Schrader, E. K., Harstad, K. G., & Matouschek, A. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.250 · Cited by 287 · see citing works
PROTACs: An Emerging Targeting Technique for Protein Degradation in Drug Discovery
Gu, S., Cui, D., Chen, X., Xiong, X., & Zhao, Y. (2018) · BioEssays · doi:10.1002/bies.201700247 · Cited by 231 · see citing works
Targeting Glucose Metabolism to Overcome Resistance to Anticancer Chemotherapy in Breast Cancer
Varghese, E., Samuel, S. M., Líšková, A., Samec, M., Kubatka, P., & Büsselberg, D. (2020) · Cancers · doi:10.3390/cancers12082252 · Cited by 208 · see citing works
Small-molecule displacement of a cryptic degron causes conditional protein degradation
Bonger, K. M., Chen, L., Liu, C. W., & Wandless, T. J. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.598 · Cited by 207 · see citing works
Structural Diversity of Ubiquitin E3 Ligase
Toma-Fukai, S., & Shimizu, T. (2021) · Molecules · doi:10.3390/molecules26216682 · Cited by 199 · see citing works
Berke, S. J. S., & Paulson, H. L. (2003) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(03)00053-4 · Cited by 178 · see citing works
Cai, J., Maitra, A., Anders, R. A., Taketo, M. M., & Pan, D. (2015) · Genes & Development · doi:10.1101/gad.264515.115 · Cited by 175 · see citing works
Lim, S., Khoo, R., Peh, K. M., Teo, J., Chang, S. C., Ng, S., Beilhartz, G. L., Melnyk, R. A., Johannes, C. W., Brown, C. J., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1920251117 · Cited by 170 · see citing works
Buckley, D. L., & Crews, C. M. (2014) · Angewandte Chemie International Edition · doi:10.1002/anie.201307761 · Cited by 153 · see citing works
Tudzarova, S., Colombo, S. L., Stoeber, K., Carcamo, S., Williams, G. H., & Moncada, S. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1102247108 · Cited by 136 · see citing works
Cowan, A. D., & Ciulli, A. (2022) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-032620-104421 · Cited by 129 · see citing works
Conditional Protein Alleles Using Knockin Mice and a Chemical Inducer of Dimerization
Stankunas, K., Bayle, J. H., Gestwicki, J. E., Lin, Y., Wandless, T. J., & Crabtree, G. R. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00491-x · Cited by 129 · see citing works
Armenti, S. T., Lohmer, L. L., Sherwood, D. R., & Nance, J. (2014) · Development · doi:10.1242/dev.115048 · Cited by 124 · see citing works
Intracellular Antibodies (Intrabodies) and Their Therapeutic Potential
Lo, A. S., Zhu, Q. K., & Marasco, W. A. (2007) · Handbook of experimental pharmacology · doi:10.1007/978-3-540-73259-4_15 · Cited by 116 · see citing works
PROTAC’ing oncoproteins: targeted protein degradation for cancer therapy
Kelm, J. M., Pandey, D. S., Malin, E., Kansou, H. W., Arora, S., Kumar, R., & Gavande, N. S. (2023) · Molecular Cancer · doi:10.1186/s12943-022-01707-5 · Cited by 115 · see citing works
Conditional Degrons for Controlling Protein Expression at the Protein Level
Natsume, T., & Kanemaki, M. T. (2017) · Annual Review of Genetics · doi:10.1146/annurev-genet-120116-024656 · Cited by 109 · see citing works
Conditional Control of Protein Function
Banaszynski, L. A., & Wandless, T. J. (2006) · Chemistry & Biology · doi:10.1016/j.chembiol.2005.10.010 · Cited by 97 · see citing works
Targeting botulinum neurotoxin persistence by the ubiquitin-proteasome system
Tsai, Y. C., Maditz, R., Kuo, C.-L., Fishman, P. S., Shoemaker, C. B., Oyler, G. A., & Weissman, A. M. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1008302107 · Cited by 96 · see citing works
Montrose, K., & Krissansen, G. W. (2014) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2014.10.006 · Cited by 95 · see citing works
Intracellular antibodies and challenges facing their use as therapeutic agents
Lobato, M. N., & Rabbitts, T. H. (2003) · Trends in Molecular Medicine · doi:10.1016/s1471-4914(03)00163-1 · Cited by 93 · see citing works
Ubiquitin-dependent proteolysis: its role in human diseases and the design of therapeutic strategies
Sakamoto, K. M. (2002) · Molecular Genetics and Metabolism · doi:10.1016/s1096-7192(02)00146-4 · Cited by 81 · see citing works
Lee, J., & Zhou, P. (2010) · Genes & Cancer · doi:10.1177/1947601910382899 · Cited by 79 · see citing works
Self-citationThe Ubiquitin System in Alzheimer’s Disease
Harris, L. D., Jasem, S., & Licchesi, J. D. F. (2020) · Advances in experimental medicine and biology · doi:10.1007/978-3-030-38266-7_8 · Cited by 76 · see citing works
Liu, C., Wang, L., Liu, X., Tan, Y., Tao, L., Xiao, Y., Deng, P., Wang, H., Deng, Q., Lin, Y., et al. (2021) · Theranostics · doi:10.7150/thno.48699 · Cited by 76 · see citing works
Jin, H., Luo, S., Wang, Y., Liu, C., Piao, Z.-H., Xu, M., Guan, W., Li, Q., Zou, H., Tan, Q.-Y., et al. (2017) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2017.06.008 · Cited by 75 · see citing works
A protein knockdown strategy to study the function of β-catenin in tumorigenesis
Cong, F., Zhang, J., Pao, W. J., Zhou, P., & VARMUS, H. E. (2003) · BMC Molecular Biology · doi:10.1186/1471-2199-4-10 · Cited by 75 · see citing works
Self-citationFunctional interaction of 13 yeast SCF complexes with a set of yeast E2 enzymes in vitro
Kus, B., Caldon, C. E., Andorn‐Broza, R., & Edwards, A. M. (2003) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.10620 · Cited by 72 · see citing works
Ma, D., Zou, Y., Chu, Y., Liu, Z., Liu, G., Chu, J., Li, M., Wang, J., Sun, S., & Chang, Z. (2020) · Theranostics · doi:10.7150/thno.41677 · Cited by 71 · see citing works
The emerging role for Cullin 4 family of E3 ligases in tumorigenesis
Cheng, J., Guo, J., North, B. J., Tao, K., Zhou, P., & Wei, W. (2018) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2018.11.007 · Cited by 69 · see citing works
Self-citationHatakeyama, S., Watanabe, M., Fujii, Y., & Nakayama, K. I. (2005) · Cancer Research · doi:10.1158/0008-5472.can-05-1581 · Cited by 67 · see citing works
Cytosol as battleground: ubiquitin as a weapon for both host and pathogen
Collins, C. A., & Brown, E. J. (2010) · Trends in Cell Biology · doi:10.1016/j.tcb.2010.01.002 · Cited by 66 · see citing works
Emerging drug development technologies targeting ubiquitination for cancer therapeutics
Veggiani, G., Gerpe, M. C. R., Sidhu, S. S., & Zhang, W. (2019) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2019.03.003 · Cited by 64 · see citing works
Targeted intracellular degradation of SARS-CoV-2 via computationally optimized peptide fusions
Chatterjee, P., Ponnapati, M. R., Kramme, C. C., Pleşa, A. M., Church, G. M., & Jacobson, J. M. (2020) · Communications Biology · doi:10.1038/s42003-020-01470-7 · Cited by 65 · see citing works
Chen, W., Lee, J., Cho, S. Y., & Fine, H. A. (2004) · Cancer Research · doi:10.1158/0008-5472.can-03-3906 · Cited by 65 · see citing works
Rapid Cycling and Precocious Termination of G1 Phase in Cells Expressing CDK1AF
Pomerening, J. R., Ubersax, J. A., & Ferrell, J. E. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e08-02-0172 · Cited by 65 · see citing works
Protein Engineering in the Ubiquitin System: Tools for Discovery and Beyond
Zhao, B., Tsai, Y. C., Jin, B., Wang, B., Wang, Y., Zhou, H., Carpenter, T., Weissman, A. M., & Yin, J. (2020) · Pharmacological Reviews · doi:10.1124/pr.118.015651 · Cited by 65 · see citing works
Degradation of target protein in living cells by small-molecule proteolysis inducer
Zhang, D., Baek, S.-H., Ho, A., & Kim, K. (2003) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2003.11.042 · Cited by 64 · see citing works
Khanna, R., Moss, D. J., & Gandhi, M. K. (2005) · Nature Clinical Practice Oncology · doi:10.1038/ncponc0107 · Cited by 64 · see citing works
Protacs for Treatment of Cancer
Sakamoto, K. M. (2010) · Pediatric Research · doi:10.1203/pdr.0b013e3181d35017 · Cited by 63 · see citing works
Butler, D. C., McLear, J. A., & Messer, A. C. (2011) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2011.11.004 · Cited by 62 · see citing works
Tellam, J., Sherritt, M. A., Thomson, S., Tellam, R. L., Moss, D. J., Burrows, S. R., Wiertz, E. J. H. J., & Khanna, R. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m104535200 · Cited by 62 · see citing works
Eradication of pathogenic β-catenin by Skp1/Cullin/F box ubiquitination machinery
Su, Y., Ishikawa, S., Kojima, M., & Liu, B. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2133261100 · Cited by 58 · see citing works
Meusser, B., & Sommer, T. (2004) · Molecular Cell · doi:10.1016/s1097-2765(04)00212-6 · Cited by 56 · see citing works
Structure, Dynamics, and Functionality of Tankyrase Inhibitor-Induced Degradasomes
Thorvaldsen, T. E., Pedersen, N. M., Wenzel, E. M., Schultz, S. W., Brech, A., Liestøl, K., Waaler, J., Krauss, S. J. K., & Stenmark, H. (2015) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-15-0125 · Cited by 51 · see citing works
Heat‐Inducible Degron and the Making of Conditional Mutants
Dohmen, R. J., & Varshavsky, A. J. (2005) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(05)99052-6 · Cited by 51 · see citing works
Exploring the functional complexity of cellular proteins by protein knockout
Zhang, J., Zheng, N., & Zhou, P. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2233012100 · Cited by 51 · see citing works
Self-citationZhou, P. (2004) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2004.10.012 · Cited by 50 · see citing works
Self-citationBerset, C., Griač, P., Tempel, R., LaRUE, J. M., Wittenberg, C., & Lanker, S. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.13.4463-4476.2002 · Cited by 49 · see citing works
Paz, K., Brennan, L. A., Iacolina, M. D., Doody, J. F., Hadari, Y. R., & Zhu, Z. (2005) · Molecular Cancer Therapeutics · doi:10.1158/1535-7163.mct-05-0174 · Cited by 49 · see citing works
Accelerated Neuronal Cell Recovery from Botulinum Neurotoxin Intoxication by Targeted Ubiquitination
Kuo, C.-L., Oyler, G. A., & Shoemaker, C. B. (2011) · PLoS ONE · doi:10.1371/journal.pone.0020352 · Cited by 48 · see citing works
Matsuzawa, S., Cuddy, M., Fukushima, T., & Reed, J. C. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507512102 · Cited by 47 · see citing works
Broad-Spectrum Proteome Editing with an Engineered Bacterial Ubiquitin Ligase Mimic
Ludwicki, M. B., Li, J., Stephens, E. A., Roberts, R. W., Koide, S., Hammond, P. T., & DeLisa, M. P. (2019) · ACS Central Science · doi:10.1021/acscentsci.9b00127 · Cited by 46 · see citing works
Heng, B. C., & Cao, T. (2005) · Medical Hypotheses · doi:10.1016/j.mehy.2005.01.011 · Cited by 45 · see citing works
Won, J., Chang, S., Oh, S., & Kim, T. K. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0401801101 · Cited by 44 · see citing works
Beyond canonical PROTAC: biological targeted protein degradation (bioTPD)
Wang, H., Zhou, R., Xu, F., Yang, K., Zheng, L., Zhao, P., Shi, G., Dai, L., Xu, C., Yu, L., et al. (2023) · Biomaterials Research · doi:10.1186/s40824-023-00385-8 · Cited by 46 · see citing works
A Protein Silencing Switch by Ligand-induced Proteasome-targeting Intrabodies
Melchionna, T., & Cattaneo, A. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.09.053 · Cited by 43 · see citing works
Targeted degradation of β-catenin by chimeric F-box fusion proteins
Liu, J., Stevens, J., Matsunami, N., & White, R. L. (2003) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2003.12.035 · Cited by 42 · see citing works
Nanobody-Directed Specific Degradation of Proteins by the 26S-Proteasome in Plants
Baudisch, B., Pfort, I., Sorge, E., & Conrad, U. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00130 · Cited by 41 · see citing works
Li, N., Truong, S., Nouri, M., Moore, J., Nakouzi, N. A., Lubik, A. A., & Buttyan, R. (2018) · Oncogene · doi:10.1038/s41388-017-0098-7 · Cited by 40 · see citing works
Reverse genetics of essential genes in tissue-culture cells: ‘dead cells talking’
Hudson, D. F., Morrison, C. G., Ruchaud, S., & Earnshaw, W. C. (2002) · Trends in Cell Biology · doi:10.1016/s0962-8924(02)02281-x · Cited by 40 · see citing works
Options to Improve the Action of PROTACs in Cancer: Development of Controlled Delivery Nanoparticles
Juan, A., Noblejas‐López, M. D. M., Arenas-Moreira, M., Alonso‐Moreno, C., & Ocaña, A. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.805336 · Cited by 39 · see citing works
Tang, Y., Han, B., Xin-quan, Y., Hong, Y., Wang, Y., Zhao, F., Yu, S., Sun, X., & Xia, S. (2008) · Asian Journal of Andrology · doi:10.1038/aja.2008.26 · Cited by 38 · see citing works
Chhangani, D., & Mishra, A. (2013) · Molecular Neurobiology · doi:10.1007/s12035-013-8411-0 · Cited by 37 · see citing works
Fujimoto, S., Takase, T., Kadono, N., Maekubo, K., & Hirai, Y. (2014) · Journal of Dermatological Science · doi:10.1016/j.jdermsci.2013.12.006 · Cited by 34 · see citing works
Sculpting ion channel functional expression with engineered ubiquitin ligases
Kanner, S. A., Morgenstern, T. J., & Colecraft, H. M. (2017) · eLife · doi:10.7554/elife.29744 · Cited by 36 · see citing works
Gene regulation technologies for gene and cell therapy
Butterfield, G. L., Reisman, S. J., Iglesias, N., & Gersbach, C. A. (2025) · Molecular Therapy · doi:10.1016/j.ymthe.2025.04.004 · Cited by 38 · see citing works
Shanzer, M., Adler, J., Ricardo-Lax, I., Reuven, N. B., & Shaul, Y. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1610223114 · Cited by 33 · see citing works
Chemical Approaches to Controlling Intracellular Protein Degradation
Schneekloth, J. S., & Crews, C. M. (2004) · ChemBioChem · doi:10.1002/cbic.200400274 · Cited by 33 · see citing works
Intrabody strategies for the treatment of human papillomavirus-associated disease
Doorbar, J., & Griffin, H. M. (2007) · Expert Opinion on Biological Therapy · doi:10.1517/14712598.7.5.677 · Cited by 33 · see citing works
Protein-Based Degraders: From Chemical Biology Tools to Neo-Therapeutics
Ou, L., Setegne, M. T., Elliot, J., Shen, F., & Dassama, L. M. K. (2025) · Chemical Reviews · doi:10.1021/acs.chemrev.4c00595 · Cited by 30 · see citing works
Protein Knockouts in Living Eukaryotes Using deGradFP and Green Fluorescent Protein Fusion Targets
Caussinus, E., Kanca, O., & Affolter, M. (2013) · Current Protocols in Protein Science · doi:10.1002/0471140864.ps3002s73 · Cited by 29 · see citing works
Principles of paralog-specific targeted protein degradation engaging the C-degron E3 KLHDC2
Scott, D. C., Dharuman, S., Griffith, E. C., Chai, S. C., Ronnebaum, J., King, M. T., Tangallapally, R. P., Lee, C., Gee, C. T., Yang, L., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-52966-3 · Cited by 28 · see citing works
Stephens, E. A., Ludwicki, M. B., Meksiriporn, B., Li, M., Ye, T., Monticello, C., Forsythe, K. J., Kummer, L., Zhou, P., Plückthun, A., et al. (2021) · ACS Synthetic Biology · doi:10.1021/acssynbio.1c00357 · Cited by 27 · see citing works
Self-citationMuddassir, M., Soni, K. V., Sangani, C. B., AlArifi, A. S., Afzal, M. F., Abduh, N. A. Y., Duan, Y., & Bhadja, P. (2020) · RSC Advances · doi:10.1039/d0ra07971e · Cited by 25 · see citing works
Generic tools for conditionally altering protein abundance and phenotypes on demand
Faden, F., Mielke, S., Lange, D., & Dißmeyer, N. (2014) · Biological Chemistry · doi:10.1515/hsz-2014-0160 · Cited by 24 · see citing works
Cohen, J. C., Scott, D. K., MILLER, J. A., Zhang, J., Zhou, P., & Larson, J. E. (2004) · BMC Developmental Biology · doi:10.1186/1471-213x-4-4 · Cited by 24 · see citing works
Self-citationAneuploidy in human cancer: new tools and perspectives
Lakhani, A. A., Thompson, S. L., & Sheltzer, J. M. (2023) · Trends in Genetics · doi:10.1016/j.tig.2023.09.002 · Cited by 24 · see citing works
β-TrCP-mediated ubiquitination and degradation of liver-enriched transcription factor CREB-H
Cheng, Y., Gao, W., Tang, H.-M. V., Deng, J., Wong, C., Chan, C., & Jin, D. (2016) · Scientific Reports · doi:10.1038/srep23938 · Cited by 23 · see citing works
Targeted protein degradation in mammalian cells: A promising avenue toward future
Zhang, T., Liu, C., Li, W., Kuang, J., Qiu, X., Lu, M., & Zhu, L. (2022) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2022.09.038 · Cited by 22 · see citing works
Oxygen‐independent degradation of HIF‐α via bioengineered VHL tumour suppressor complex
Sufan, R. I., Moriyama, E. H., Mariampillai, A. L. D., Roche, O., Evans, A. J., Alajez, N. M., Vitkin, I. A., Yang, V. X. D., Liu, F., Wilson, B. C., et al. (2009) · EMBO Molecular Medicine · doi:10.1002/emmm.200900004 · Cited by 21 · see citing works
RLM3, a potential adaptor between specific TIR-NB-LRR receptors and DZC proteins
Staal, J., & Dixelius, C. (2008) · Communicative & Integrative Biology · doi:10.4161/cib.1.1.6394 · Cited by 21 · see citing works
Takebayashi‐Suzuki, K., Konishi, H., Miyamoto, T., Nagata, T., Uchida, M., & Suzuki, A. (2018) · Development Growth & Differentiation · doi:10.1111/dgd.12431 · Cited by 20 · see citing works
Targeted protein degradation using chimeric human E2 ubiquitin-conjugating enzymes
Taylor, J. D., Barrett, N., Cuesta, S. M., Cassidy, K. B., Pachl, F., Dodgson, J., Patel, R. J., Eriksson, T. M., Riley, A., Burrell, M. R., et al. (2024) · Communications Biology · doi:10.1038/s42003-024-06803-4 · Cited by 19 · see citing works
Emerging Methods in Chemoproteomics with Relevance to Drug Discovery
Nguyen, C., West, G. M., & Geoghegan, K. F. (2016) · Methods in molecular biology · doi:10.1007/978-1-4939-6539-7_2 · Cited by 19 · see citing works
- Authors
- Zhou, P., Bogacki, R., McReynolds, L., & Howley, P. M.
- Affiliations
- Harvard University (US)
- Corresponding author
- Zhou, Pengbo
- Howley, Peter M.
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2000-09
- Volume
- 6
- Issue
- 3
- Pages
- 751-756
- ISSN
- 1097-2765 (ISSN-L)
- OpenAlex
- W2034414781
- Cited by
- 164
- References
- 23
- Citations by year
- 2026: 1 · 2025: 7 · 2024: 7 · 2023: 9 · 2022: 8 · 2021: 3 · 2020: 8 · 2019: 6 · 2018: 5 · 2017: 5 · 2016: 7 · 2015: 6 · 2014: 9 · 2013: 6 · 2012: 2
- FWCI
- 2.65
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (R01CA064888, R01-CA64888-06)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Keywords
- ubiquitination, protein degradation, ubiquitin-proteasome system, selective protein degradation, proteasome, RNA interference, yeast, mammalian cells
- MeSH terms
- F-Box-WD Repeat-Containing Protein 7, Animals, Uterine Cervical Neoplasms, Female, Humans, Ligases, Mammals, Molecular Biology, Nuclear Proteins, Plasmids, Recombinant Fusion Proteins, Saccharomyces cerevisiae, Osteosarcoma, Substrate Specificity, Tumor Cells, Cultured, Ubiquitins, Gene Expression Regulation, Enzymologic, Retinoblastoma Protein, Cell Cycle Proteins, GTP-Binding Proteins, Saccharomyces cerevisiae Proteins, Ubiquitin-Protein Ligases, F-Box Proteins, beta-Transducin Repeat-Containing Proteins, Retinoblastoma-Like Protein p107
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review