The intestinal protist Blastocystis is not a common member of the healthy infant gut microbiota in a Westernized country (Ireland)
Open accessAbstract
Research into the gut microbiota of human infants is necessary in order to better understand how inter-species interactions and ecological succession shape the diversity of the gut microbiota, and in turn, how the specific composition of the gut microbiota impacts on host health both during infancy and in later years. Blastocystis is a ubiquitous intestinal protist that has been linked to a number of intestinal and extra-intestinal diseases. However, emerging data show that asymptomatic carriage is common and that Blastocystis is prevalent in the healthy adult gut microbiota. Nonetheless, little is known about the prevalence and diversity of this microorganism in the healthy infant gut, including when and how individuals become colonized by Blastocystis. Here, we surveyed the prevalence and diversity of Blastocystis in an infant population (n = 59) from an industrialized country (Ireland) using Blastocystis-specific primers at three or more time-points up to 24 months old. Only three infants were positive for Blastocystis (prevalence = 5%) and this was only noted for samples collected at month 24. This rate is comparatively low relative to previously reported prevalence rates in the contemporaneous adult population. These data suggest that infants in Westernized countries that are successfully colonized by Blastocystis most likely acquire this microorganism via horizontal transfer.
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Blastocystis sp. is acquired later in life also in non-westernized communities where its prevalence is higher in adults.
“suggesting that this eukaryote is acquired later in life also in non-westernized communities where its prevalence is higher in the adults.”
From Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population (2023) · cites this paper as [48]
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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
Tamura, K., Dudley, J. T., Nei, M., & Kumar, S. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm092 · Cited by 28,734 · see citing works
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815 · see citing works
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774 · see citing works
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.004 · Cited by 3,315 · see citing works
Succession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540 · see citing works
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Jolley, K. A., & Maiden, M. C. J. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-595 · Cited by 2,341 · see citing works
Antibiotics, birth mode, and diet shape microbiome maturation during early life
Bokulich, N. A., Chung, J., Battaglia, T., Henderson, N., Jay, M., Li, H., D. Lieber, A., Wu, F., Perez-Perez, G. I., Chen, Y., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad7121 · Cited by 1,469 · see citing works
The composition of the gut microbiota throughout life, with an emphasis on early life
Rodríguez, J. M., Murphy, K., Stanton, C., Ross, R. P., Kober, O. I., Juge, N., Avershina, E., Rudi, K., Narbad, A., Jenmalm, M. C., et al. (2015) · Microbial Ecology in Health and Disease · doi:10.3402/mehd.v26.26050 · Cited by 1,320 · see citing works
Self-citationPersistent gut microbiota immaturity in malnourished Bangladeshi children
Subramanian, S., Huq, S., Yatsunenko, T., Haque, R., Mahfuz, M., Alam, M. A., Benezra, A., DeStefano, J., Meier, M. F., Muegge, B. D., et al. (2014) · Nature · doi:10.1038/nature13421 · Cited by 1,270 · see citing works
The Intestinal Microbiome in Early Life: Health and Disease
Arrieta, M.-C., Stiemsma, L. T., Amenyogbe, N., Brown, E. M., & Finlay, B. (2014) · Frontiers in Immunology · doi:10.3389/fimmu.2014.00427 · Cited by 1,024 · see citing works
Dynamics and stabilization of the human gut microbiome during the first year of life
Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.05.012 · Cited by 738 · see citing works
Early life dynamics of the human gut virome and bacterial microbiome in infants
Lim, E. S., Zhou, Y., Zhao, G., Bauer, I. K., Droit, L., Ndao, I. M., Warner, B. B., Tarr, P. I., Wang, D., & Holtz, L. R. (2015) · Nature Medicine · doi:10.1038/nm.3950 · Cited by 644 · see citing works
Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort
Hill, C. J., Lynch, D. B., Murphy, K., Ulaszewska, M., Jeffery, I. B., O’Shea, C. A., Watkins, C., Dempsey, E., Mattivi, F., Tuohy, K., et al. (2017) · Microbiome · doi:10.1186/s40168-016-0213-y · Cited by 573 · see citing works
Self-citationScicluna, S. M., Tawari, B., & Clark, C. G. (2006) · Protist · doi:10.1016/j.protis.2005.12.001 · Cited by 494 · see citing works
Variable geographic distribution of Blastocystis subtypes and its potential implications
Alfellani, M. A., Stensvold, C. R., Vidal-Lapiedra, A., Onuoha, E. S. U., Fagbenro-Beyioku, A. F., & Clark, C. G. (2013) · Acta Tropica · doi:10.1016/j.actatropica.2012.12.011 · Cited by 390 · see citing works
Genetic Diversity of Blastocystis in Livestock and Zoo Animals
Alfellani, M. A., Taner-Mulla, D., Jacob, A. S., et al. (2013) · Protist · doi:10.1016/j.protis.2013.05.003 · Cited by 377 · see citing works
Patterson, D. J. (1999) · The American Naturalist · doi:10.1086/303287 · Cited by 318 · see citing works
Audebert, C., Even, G., Cian, A., The Blastocystis Investigation Group, Safadi, D. E., Certad, G., Delhaès, L., Pereira, B., Nourrisson, C., Poirier, P., et al. (2016) · Scientific Reports · doi:10.1038/srep25255 · Cited by 287 · see citing works
Human parasite finds taxonomic home
Silberman, J. D., Sogin, M. L., Leipe, D. D., et al. (1996) · Nature · doi:10.1038/380398a0 · Cited by 278 · see citing works
Scanlan, P. D., Stensvold, C. R., Rajilić-Stojanović, M. D., Heilig, H. G. H. J., de Vos, W. M., O’Toole, P. W., & Cotter, P. D. (2014) · FEMS Microbiology Ecology · doi:10.1111/1574-6941.12396 · Cited by 261 · see citing works
Self-citationBeghini, F., Pasolli, E., Truong, T. D., Putignani, L., Cacciò, S. M., & Segata, N. (2017) · The ISME Journal · doi:10.1038/ismej.2017.139 · Cited by 201 · see citing works
Levels of genetic diversity vary dramatically between Blastocystis subtypes
Stensvold, C. R., Alfellani, M. A., & Clark, C. G. (2011) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2011.11.002 · Cited by 183 · see citing works
Leelayoova, S., Siripattanapipong, S., Thathaisong, U., et al. (2008) · American Journal of Tropical Medicine and Hygiene · doi:10.4269/ajtmh.2008.79.401 · Cited by 179 · see citing works
Speich, B., Croll, D., Fürst, T., Utzinger, J., & Keiser, J. (2015) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(15)00349-7 · Cited by 163 · see citing works
Blastocystis: getting to grips with our guileful guest
Scanlan, P. D., & Stensvold, C. R. (2013) · Trends in Parasitology · doi:10.1016/j.pt.2013.08.006 · Cited by 156 · see citing works
Self-citationA retrospective metagenomics approach to studyingBlastocystis
Andersen, L. O., Bonde, I., Nielsen, H. B., & Stensvold, C. R. (2015) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiv072 · Cited by 137 · see citing works
Infant fungal communities: current knowledge and research opportunities
Ward, T., Knights, D., & Gale, C. A. (2017) · BMC Medicine · doi:10.1186/s12916-017-0802-z · Cited by 94 · see citing works
Scanlan, P. D., Stensvold, C. R., & Cotter, P. D. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.00520-15 · Cited by 70 · see citing works
Self-citationPrevalence and subtype analysis of Blastocystis in healthy Indian individuals
Pandey, P. K., Verma, P. P., Marathe, N. P., et al. (2015) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2015.02.012 · Cited by 62 · see citing works
Epidemiological Aspects of Blastocystis Colonization in Children in Ilero, Nigeria
Poulsen, C. S., Efunshile, A. M., Nelson, J. A., & Stensvold, C. R. (2016) · American Journal of Tropical Medicine and Hygiene · doi:10.4269/ajtmh.16-0074 · Cited by 61 · see citing works
Prevalence and genetic diversity of Blastocystis in family units living in the United States
Scanlan, P. D., Knight, R., Song, S. J., et al. (2016) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2016.08.018 · Cited by 48 · see citing works
Self-citationMolecular typing of fecal eukaryotic microbiota of human infants and their respective mothers
Pandey, P. K., Siddharth, J., Verma, P. P., et al. (2012) · Journal of Biosciences · doi:10.1007/s12038-012-9197-3 · Cited by 44 · see citing works
Birth of the infant gut microbiome: moms deliver twice
Frese, S. A., & Mills, D. A. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.014 · Cited by 18 · see citing works
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Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
Manara, S., Selma-Royo, M., Huang, K. D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023) · Current Biology · doi:10.1016/j.cub.2023.04.011 · Cited by 30 · see citing works
- Authors
- Scanlan, P. D., Hill, C. J., Ross, R. P., Ryan, C. A., Stanton, C., & Cotter, P. D.
- Affiliations
- Teagasc - The Irish Agriculture and Food Development Authority (IE)
- University College Cork (IE)
- Corresponding author
- Scanlan, P. D.
- Venue
- Parasitology
- Publisher
- Cambridge University Press (CUP)
- Published
- 2018-02-05
- Volume
- 145
- Issue
- 10
- Pages
- 1274-1278
- ISSN
- 0031-1820 (ISSN-L)
- 1469-8161
- OpenAlex
- W2785671316
- Cited by
- 14
- References
- 33
- Citations by year
- 2026: 1 · 2024: 2 · 2023: 4 · 2021: 1 · 2020: 1 · 2019: 3 · 2018: 2
- FWCI
- 1.42
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Parasitology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Parasitology › Parasitic Infections and Diagnostics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protist diversity and phylogeny
- Keywords
- Blastocystis, infant gut microbiota, prevalence, microbial colonization, horizontal transmission, asymptomatic carriage, microbial diversity, infant development
- MeSH terms
- Gastrointestinal Microbiome, Adult, Feces, Humans, Infant, Intestines, Ireland, Longitudinal Studies, Prevalence, Polymerase Chain Reaction, Blastocystis Infections, Blastocystis, Disease Transmission, Infectious, Metagenomics
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