Accelerating the Throughput of Affinity Mass Spectrometry-Based Ligand Screening toward a G Protein-Coupled Receptor
Open accessAbstract
Affinity mass spectrometry (MS) enables rapid screening of compound mixtures for ligands bound to a specific protein target, yet its current throughput is limited to individually assay pools of 400–2000 compounds. Typical affinity MS screens implemented in pharmaceutical industry laboratories identify putative ligands based on qualitative analysis of compound binding to the target whereas no quantitative information is acquired to discriminate high- and low-affinity ligands in the screening phase. Furthermore, these screens require purification of a stabilized form of the protein target, which poses a great challenge for membrane receptor targets. Here, we describe a new, potentially general affinity MS strategy that allows screening of 20,000 compounds in one pool for highly efficient ligand discovery toward a G protein-coupled receptor (GPCR) target. Quantitative measurement of compound binding to the receptor enables high-affinity ligand selection using both the purified receptor and receptor-embedded cell membranes. This high-throughput, label-free and quantitative affinity MS screen resulted in discovery of three new antagonists of the A 2A adenosine receptor.
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AS-MS can screen large numbers of compounds, and up to 20,000 compounds in one sample have been analyzed so far.
“This high-throughput method can be used to screen large numbers of compounds,72,73 up to 20 000 compounds in one sample have been analyzed so far.74”
From Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products (2024) · cites this paper as [74]
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Structural Basis for Allosteric Regulation of GPCRs by Sodium Ions
Liu, W., Chun, E., Thompson, A. A., Chubukov, P., Xu, F., Katritch, V., Han, G. W., Roth, C., Heitman, L. H., IJzerman, A. P., et al. (2012) · Science · doi:10.1126/science.1219218 · Cited by 948 · see citing works
Self-citationDNA-encoded chemistry: enabling the deeper sampling of chemical space
Goodnow, R. A., Dumelin, C. E., & Keefe, A. D. (2017) · Nature Reviews Drug Discovery · doi:10.1038/nrd.2016.213 · Cited by 621 · see citing works
Apparent activity in high-throughput screening: origins of compound-dependent assay interference
Thorne, N., Auld, D. S., & Inglese, J. (2010) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2010.03.020 · Cited by 431 · see citing works
Co-inhibition of CD73 and A2AR Adenosine Signaling Improves Anti-tumor Immune Responses
Young, A., Ngiow, S. F., Barkauskas, D. S., Sult, E., Hay, C. M., Blake, S. J., Huang, Q., Liu, J., Takeda, K., Teng, M. W. L., et al. (2016) · Cancer Cell · doi:10.1016/j.ccell.2016.06.025 · Cited by 389 · see citing works
Adenosine A 2A Receptor as a Drug Discovery Target
Ruiz, M. D. L., Lim, Y., & Zheng, J. (2013) · Journal of Medicinal Chemistry · doi:10.1021/jm4011669 · Cited by 278 · see citing works
Nanoscale synthesis and affinity ranking
Gesmundo, N. J., Sauvagnat, B., Curran, P. J., Richards, M. P., Andrews, C. L., Dandliker, P. J., & Cernak, T. (2018) · Nature · doi:10.1038/s41586-018-0056-8 · Cited by 214 · see citing works
Allosteric “beta-blocker” isolated from a DNA-encoded small molecule library
Ahn, S., Kahsai, A. W., Pani, B., Wang, Q.-T., Zhao, S., Wall, A. L., Strachan, R. T., Staus, D. P., Wingler, L. M., Sun, L., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1620645114 · Cited by 162 · see citing works
From Experimental Design to Validated Hits
Giannetti, A. M. (2011) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/b978-0-12-381274-2.00008-x · Cited by 130 · see citing works
Gillespie, R. J., Bamford, S. J., Botting, R., Comer, M., Denny, S., Gaur, S., Griffin, M., Jordan, A. M., Knight, A. R., Lerpiniere, J., et al. (2008) · Journal of Medicinal Chemistry · doi:10.1021/jm800961g · Cited by 104 · see citing works
Chen, D., Errey, J. C., Heitman, L. H., Marshall, F. H., IJzerman, A. P., & Siegal, G. (2012) · ACS Chemical Biology · doi:10.1021/cb300436c · Cited by 88 · see citing works
Discovery, SAR, and X-ray Binding Mode Study of BCATm Inhibitors from a Novel DNA-Encoded Library
Deng, H., Zhou, J., Sundersingh, F. S., Summerfield, J. D., Somers, D. O., Messer, J. A., Satz, A. L., Ancellin, N., Arico-Muendel, C. C., Bedard, K. L., et al. (2015) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.5b00179 · Cited by 80 · see citing works
O’Connell, T. N., Ramsay, J., Rieth, S. F., et al. (2014) · Analytical Chemistry · doi:10.1021/ac500938y · Cited by 78 · see citing works
Yang, H., Medeiros, P. F., Raha, K., Elkins, P. A., Lind, K. E., Lehr, R. V., Adams, N. D., Burgess, J. L., Schmidt, S. J., Knight, S. D., et al. (2015) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.5b00025 · Cited by 75 · see citing works
Molecular Docking Screening Using Agonist-Bound GPCR Structures: Probing the A2A Adenosine Receptor
Rodriguez, D. J., Gao, Z.-G., Moss, S. M., Jacobson, K. A., & Carlsson, J. (2015) · Journal of Chemical Information and Modeling · doi:10.1021/ci500639g · Cited by 72 · see citing works
Self-citationBiacore analysis with stabilized G-protein-coupled receptors
Rich, R. L., Errey, J. C., Marshall, F. H., et al. (2010) · Analytical Biochemistry · doi:10.1016/j.ab.2010.10.008 · Cited by 70 · see citing works
Qin, S., Ren, Y., Xu, F., et al. (2015) · Analytica Chimica Acta · doi:10.1016/j.aca.2015.06.017 · Cited by 63 · see citing works
Self-citationSchmidt, M., Sun, H., Rogne, P., et al. (2011) · Journal of the American Chemical Society · doi:10.1021/ja209050k · Cited by 62 · see citing works
High-Throughput Affinity-Based Technologies for Small-Molecule Drug Discovery
Zhu, Z., & Cuozzo, J. W. (2009) · SLAS DISCOVERY · doi:10.1177/1087057109350114 · Cited by 58 · see citing works
Xu, F., Wang, Z., Li, L., et al. (2016) · Scientific Reports · doi:10.1038/srep29680 · Cited by 56 · see citing works
Targeting adenosine A2A receptor antagonism for treatment of cancer
Congreve, M., Brown, G. A., Borodovsky, A., & Lamb, M. L. (2018) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2018.1534825 · Cited by 54 · see citing works
Deng, Y., Shipps, G. W., Cooper, A. B., English, J. M., Annis, D. A., Carr, D. M., Yang, N., Wang, T., Zhu, H. Y. H., Chuang, C., et al. (2014) · Journal of Medicinal Chemistry · doi:10.1021/jm500847m · Cited by 49 · see citing works
Qin, S., Meng, M., Yang, D., et al. (2018) · Chemical Science · doi:10.1039/c7sc04698g · Cited by 49 · see citing works
Self-citationMethod for Quantitative Protein−Ligand Affinity Measurements in Compound Mixtures
Annis, D. A., Shipps, G. W., Deng, Y., Popovici-Müller, J. V., Siddiqui, M. A., Curran, P. J., Gowen, M., & Windsor, W. T. (2007) · Analytical Chemistry · doi:10.1021/ac0702701 · Cited by 48 · see citing works
Bergsdorf, C., & Ottl, J. (2010) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.2010.524641 · Cited by 43 · see citing works
Chen, X., Qin, S., Chen, S., Li, J., Li, L., Wang, Z., Wang, Q., Lin, J., Yang, C., & Shui, W. (2015) · Scientific Reports · doi:10.1038/srep08361 · Cited by 39 · see citing works
Self-citationDeflorian, F., Kumar, T. S., Phan, K., Gao, Z., Xu, F., Wu, H., Katritch, V., Stevens, R. C., & Jacobson, K. A. (2011) · Journal of Medicinal Chemistry · doi:10.1021/jm201461q · Cited by 37 · see citing works
Self-citationSanders, M. P. A., Roumen, L., van der Horst, E., Lane, J. R., Vischer, H. F., van Offenbeek, J., de Vries, H., Verhoeven, S., Chow, K. Y. C., Verkaar, F., et al. (2012) · Journal of Medicinal Chemistry · doi:10.1021/jm300280e · Cited by 31 · see citing works
Kutilek, V. D., Andrews, C. L., Richards, M. P., Xu, Z., Sun, T., Chen, Y., Hashke, A., Smotrov, N., Fernández, R., Nickbarg, E. B., et al. (2016) · SLAS DISCOVERY · doi:10.1177/1087057116637353 · Cited by 31 · see citing works
Surface Plasmon Resonance Analysis of Seven-Transmembrane Receptors
Aristotelous, T., Hopkins, A. L., & Navratilova, I. H. (2015) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/bs.mie.2015.01.016 · Cited by 28 · see citing works
Whitehurst, C. E., Yao, Z., Murphy, D. M., et al. (2012) · Combinatorial Chemistry & High Throughput Screening · doi:10.2174/138620712800563945 · Cited by 23 · see citing works
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- [23]Fu X; Wang Z; Li L; Dong S; Li Z; Jiang Z; Wang Y; Shui W Sci. Rep 2016, 6, 29680. 27403722 PMC4940736
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Prudent, R., Annis, D. A., Dandliker, P. J., Ortholand, J.-Y., & Roche, D. (2020) · Nature Reviews Chemistry · doi:10.1038/s41570-020-00229-2 · Cited by 104 · see citing works
Vitale, G. A., Geibel, C., Minda, V., Wang, M., Aron, A. T., & Petras, D. (2024) · Natural Product Reports · doi:10.1039/d3np00050h · Cited by 66 · see citing works
Self-citationGLP-1R Signaling and Functional Molecules in Incretin Therapy
Wan, W., Qin, Q., Xie, L., Zhang, H., Wu, F., Stevens, R. C., & Liu, Y. (2023) · Molecules · doi:10.3390/molecules28020751 · Cited by 44 · see citing works
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- Authors
- Lu, Y., Qin, S., Zhang, B., Dai, A., Cai, X., Ma, M., Gao, Z.-G., Yang, D., Stevens, R. C., Jacobson, K. A., Wang, M.-W., & Shui, W.
- Affiliations
- ShanghaiTech University (CN)
- Chinese Academy of Sciences (CN)
- National Institutes of Health (US)
- Corresponding author
- Wang, Ming-Wei
- Shui, Wenqing
- ORCID
- Venue
- Analytical Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2019-05-16
- Volume
- 91
- Issue
- 13
- Pages
- 8162-8169
- ISSN
- 0003-2700 (ISSN-L)
- 1520-6882
- PMC
- PMC6669887
- OpenAlex
- W2946364931
- Cited by
- 39
- References
- 30
- Citations by year
- 2026: 2 · 2025: 9 · 2024: 5 · 2023: 6 · 2022: 3 · 2021: 4 · 2020: 9 · 2019: 1
- FWCI
- 1.69
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Analytical Chemistry (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Ministry of Science and Technology of the People's Republic of China (2018YFA0507004, 2018ZX09735-001, 2018ZX09711002-002-005)
- National Institute of Diabetes and Digestive and Kidney Diseases (ZIADK31117)
- National Natural Science Foundation of China (81573479, 81773792)
- Topics
- Physical Sciences › Chemistry › Spectroscopy › Mass Spectrometry Techniques and Applications
- Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolomics and Mass Spectrometry Studies
- Keywords
- ligand screening, G protein-coupled receptors, adenosine A2A receptor, high-throughput screening, cell surface receptors, receptor antagonists, label-free screening
- MeSH terms
- Cell Membrane, Humans, Ligands, Protein Binding, Mass Spectrometry, Receptors, G-Protein-Coupled, High-Throughput Screening Assays, Adenosine A2 Receptor Antagonists
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