Predicting Protein–Protein Interactions from the Molecular to the Proteome Level

Cited by (369)

Items 101–200 of 369

1. Simulated Isotope Exchange Patterns Enable Protein Structure Determination
   Antoni James Borysik · 2017 · Angewandte Chemie International Edition
2. ‘Omic’ technologies as a helpful tool in radioecological research
   Polina Volkova, Stanislav A. Geras'kin · 2018 · Journal of Environmental Radioactivity
3. Deep learning‐assisted prediction of protein–protein interactions in Arabidopsis thaliana
   Jingyan Zheng, Xiaodi Yang, Yan Huang, Shiping Yang, Stefan Wuchty, Ziding Zhang · 2023 · The Plant Journal
4. Integration of text mining and biological network analysis: Identification of essential genes in sulfate-reducing bacteria
   Priya Saxena, Shailabh Rauniyar, Payal Thakur, Ram Nageena Singh, Alain Bertrand Bomgni, Mathew Olakunle Alaba, Abhilash Kumar Tripathi, Etienne Z. Gnimpiéba, Carol Lushbough, Rajesh Kumar Sani · 2023 · Frontiers in Microbiology
5. 3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients
   Cansu Dinçer, Tugba Kaya, Özlem Keskin, Attila Gürsoy, Nurcan Tunçbağ · 2019 · PLoS Computational Biology
6. Developments in integrative modeling with dynamical interfaces
   Ozdemir, E Sila, Nussinov, Ruth, Gursoy, Attila, Keskin, Ozlem · 2019 · Current Opinion in Structural Biology
7. Protein oligomer modeling guided by predicted interchain contacts in <scp>CASP14</scp>
   Baek, Minkyung, Anishchenko, Ivan, Park, Hahnbeom, Humphreys, Ian R., Baker, David · 2021 · Proteins: Structure, Function, and Bioinformatics
8. A deep learning framework for predicting disease-gene associations with functional modules and graph augmentation
   Xianghu Jia, Weiwen Luo, Jiaqi Li, Jieqi Xing, Hongjie Sun, Shunyao Wu, Xiaoquan Su · 2024 · BMC Bioinformatics
9. Robust principal component analysis‐based prediction of protein‐protein interaction hot spots
   Divya Sitani, Alejandro Giorgetti, Mercedes Alfonso‐Prieto, Paolo Carloni · 2021 · Proteins Structure Function and Bioinformatics
10. Extracting Quantitative Information at Quantum Mechanical Level from Noncovalent Interaction Index Analyses
    Erna Katharina Wieduwilt, Roberto A. Boto, Giovanni Macetti, Rubén Laplaza, Julia Contreras‐García, Alessandro Genoni · 2023 · Journal of Chemical Theory and Computation
11. APEX3 – An Optimized Tool for Rapid and Unbiased Proximity Labeling
    Jordan T. Becker, Ashley A. Auerbach, Reuben S. Harris · 2023 · Journal of Molecular Biology
12. Advances in the Clinical Application of High-throughput Proteomics
    Miao Cui, Fei Deng, Mary Lenora Disis, Chao Cheng, Lanjing Zhang · 2024 · Exploratory Research and Hypothesis in Medicine
13. Molecular interaction between human SUMO-I and histone like DNA binding protein of Helicobacter pylori (Hup) investigated by NMR and other biophysical tools
    Nancy Jaiswal, Nipanshu Agarwal, Anupreet Kaur, Sarita Tripathi, Gagandeep Kaur Gahlay, Ashish Arora, Venus Singh Mithu, Krishna Mohan Poluri, Dinesh Kumar · 2018 · International Journal of Biological Macromolecules
14. Organometallic AlaM reagents for umpolung peptide diversification
    Feng Zhu, Wyatt C. Powell, Ruiheng Jing, Maciej A. A. Walczak · 2021 · Chem Catalysis
15. PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps
    Guray Kuzu, Özlem Keskin, Ruth Nussinov, Attila Gürsoy · 2016 · Acta Crystallographica Section D Structural Biology
16. Proteomics as a tool to improve novel insights into skin diseases: what we know and where we should be going
    Sheng-Yuan Zheng, Ximin Hu, Kun Huang, Zi-han Li, Qing-ning Chen, Rong-hua Yang, Kun Xiong · 2022 · Frontiers in Surgery
17. Computational Prediction of Protein Complexes from Protein Interaction Networks
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
18. A host–guest ATP responsive strategy for intracellular delivery of phosphopeptides
    Beibei Han, Yu‐Chen Pan, Yanmei Li, Dong‐Sheng Guo, Yong‐Xiang Chen · 2020 · Chemical Communications
19. In silico identification of small molecule modulators for disruption of Hsp90–Cdc37 protein–protein interaction interface for cancer therapeutic application
    Prajakta Prakash Dike, Shovonlal Bhowmick, Gaber E. Eldesoky, Saikh Mohammad Wabaidur, Preeti Chunarkar Patil, Md Ataul Islam · 2020 · Journal of Biomolecular Structure and Dynamics
20. Applications of in Silico Methods for Design and Development of Drugs Targeting Protein-Protein Interactions
    Vittoria Cicaloni, Alfonso Trezza, Francesco Pettini, Ottavia Spiga · 2019 · Current Topics in Medicinal Chemistry
21. Global profiling of protein complexes: current approaches and their perspective in biomedical research
    Elena L. Rudashevskaya, Albert Sickmann, Stavroula Markoutsa · 2016 · Expert Review of Proteomics
22. Hidden partners: Using cross‐docking calculations to predict binding sites for proteins with multiple interactions
    Nathalie Lagarde, Alessandra Carbone, Sophie Sacquin‐Mora · 2018 · Proteins Structure Function and Bioinformatics
23. An Efficient Feature Extraction Technique Based on Local Coding PSSM and Multifeatures Fusion for Predicting Protein-Protein Interactions
    Jiyong An, Yong Zheng Zhou, Yujun Zhao, Zi-Ji Yan · 2019 · Evolutionary Bioinformatics
24. Advancing from protein interactomes and gene co-expression networks towards multi-omics-based composite networks: approaches for predicting and extracting biological knowledge
    Vinay Randhawa, Shivalika Pathania · 2020 · Briefings in Functional Genomics
25. Novel Mutations in β-MYH7 Gene in Indian Patients With Dilated Cardiomyopathy
    Deepa Selvi Rani, Archana Vijaya Kumar, Pratibha Nallari, Katakam Sampathkumar, Perundurai Subramaniam Dhandapany, Calambur Narasimhan, Andiappan Rathinavel, Kumarasamy Thangaraj K · 2021 · CJC Open
26. Cross-seeding between Aβ and SEVI indicates a pathogenic link and gender difference between alzheimer diseases and AIDS
    Yijing Tang, Dong Zhang, Yanxian Zhang, Yonglan Liu, Yifat Miller, Keven Gong, Jie Zheng · 2022 · Communications Biology
27. Characterization of Monoclonal Antibody–Protein Antigen Complexes Using Small-Angle Scattering and Molecular Modeling
    Maria Monica Castellanos, James A. Snyder, Melody Lee, Srinivas Chakravarthy, Nicholas Clark, Arnold McAuley, Joseph E. Curtis · 2017 · Antibodies
28. Exploring Proteomic Drug Targets, Therapeutic Strategies and Protein - Protein Interactions in Cancer: Mechanistic View
    Khalid Bashir Dar, Aashiq Hussain Bhat, Shajrul Amin, Syed Anjum, Bilal Ahmad Reshi, Mohammad Afzal Zargar, Akbar Masood, Showkat Ahmad Ganie · 2018 · Current Cancer Drug Targets
29. Adding biological meaning to human protein-protein interactions identified by yeast two-hybrid screenings: A guide through bioinformatics tools
    Juliana Felgueiras, Joana Vieira Silva, Margarida Fardilha · 2017 · Journal of Proteomics
30. Rhodium-Catalyzed Annulation of Vinylated Tyrosines with Internal Alkynes to Access Oxepine-Mounted Unnatural Tyrosines and Its Peptide Late Stage Functionalization
    Narendra Dinkar Kharat, Chikkagundagal K. Mahesha, Kiran Bajaj, Rajeev Sakhuja · 2022 · Organic Letters
31. Benchmark Study Based on 2P2IDB to Gain Insights into the Discovery of Small-Molecule PPI Inhibitors
    Zhe Wang, Yu Kang, Dan Li, Huiyong Sun, Xiaowu Dong, Xiaojun Yao, Lei Xu, Shan Chang, Youyong Li, Tingjun Hou · 2018 · The Journal of Physical Chemistry B
32. Construction and analysis of the protein–protein interaction network for the olfactory system of the silkworm Bombyx mori
    Shanghong Xin, Wenjun Zhang · 2020 · Archives of Insect Biochemistry and Physiology
33. Several genes involved in the JAK-STAT pathway may act as prognostic markers in pancreatic cancer identified by microarray data analysis
    Chun Pang, Yuan Gu, Yuechao Ding, Chao Ma, Wei Yv, Qian Wang, Bo Meng · 2018 · Medicine
34. Strategies and Applications for Supramolecular Protein Self‐Assembly
    Yijia Li, Ruizhen Tian, Yingping Zou, Tingting Wang, Junqiu Liu · 2024 · Chemistry - A European Journal
35. Current Scenario on Application of Computational Tools in Biological Systems
    Hemant J. Purohit, Hitesh Tikariha, Vipin Chandra Kalia · 2018 · Springer eBooks
36. A Novel Stochastic Block Model for Network-Based Prediction of Protein-Protein Interactions
    Xiaojuan Wang, Pengwei Hu, Lun Hu · 2020 · Lecture notes in computer science
37. Protein deep profile and model predictions for identifying the causal genes of male infertility based on deep learning
    Fang Xu, Ganggang Guo, Feida Zhu, Xiaojun Tan, Liqing Fan · 2021 · Information Fusion
38. Structural and Functional Properties of Proteins
    Krishna Mohan Poluri, Khushboo Gulati, Sharanya Sarkar · 2021 · Springer eBooks
39. Adaptor-Specific Antibody Fragment Inhibitors for the Intracellular Modulation of p97 (VCP) Protein–Protein Interactions
    Ziwen Jiang, Yu-Hsuan Kuo, Mengqi Zhong, Jianchao Zhang, Xin X. Zhou, Lijuan Xing, James A. Wells, Yanzhuang Wang, Michelle R. Arkin · 2022 · Journal of the American Chemical Society
40. Conformationally Programmable Chiral Foldamers with Compact and Extended Domains Controlled by Monomer Structure
    Zachariah Lockhart, Peter C. Knipe · 2018 · Angewandte Chemie International Edition
41. Structural modeling of protein complexes: Current capabilities and challenges
    Justas Dapkūnas, Kliment Olechnovič, Česlovas Venclovas · 2019 · Proteins Structure Function and Bioinformatics
42. Benchmarking selected computational gene network growing tools in context of virus-host interactions
    Biruhalem Taye, Candida Vaz, Vivek Tanavde, Vladimir A. Kuznetsov, Frank Eisenhaber, Richard Joseph Sugrue, Sebastian Maurer‐Stroh · 2017 · Scientific Reports
43. PRISM-EM : template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps. Corrigendum
    Guray Kuzu, Özlem Keskin, Ruth Nussinov, Attila Gürsoy · 2018 · Acta Crystallographica Section D Structural Biology
44. Interactome of SARS-CoV-2 / nCoV19 modulated host proteins with computationally predicted PPIs
    Kalyani Bindu Karunakaran, N. Balakrishnan, Madhavi K. Ganapathiraju · 2020
45. A bioinformatics approach to characterize a hypothetical protein Q6S8D9_SARS of SARS-CoV
    Md Foyzur Rahman, Rubait Hasan, Mohammad Shahangir Biswas, Jamiatul Husna Shathi, Md. Faruk Hossain, Aoulia Yeasmin, Mohammad Zakerin Abedin, Md. Tofazzal Hossain · 2023 · Genomics & Informatics
46. Bidirectional linkage of DNA barcodes for the multiplexed mapping of higher-order protein interactions in cells
    Yu Liu, Noah R. Sundah, Nicholas R. Y. Ho, Wan Xiang Shen, Yun Xu, Auginia Natalia, Zhonglang Yu, Ju Ee Seet, Ching Wan Chan, Tze Ping Loh et al. · 2024 · Nature Biomedical Engineering
47. Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy
    Erik K. Larsen, Cristina Olivieri, Caitlin Walker, Manu Veliparambil Subrahmanian, Jiali Gao, David Bernlohr, Marco Tonelli, John L. Markley, Gianluigi Veglia · 2018 · Molecules
48. Moving pictures: Reassessing docking experiments with a dynamic view of protein interfaces
    Chantal Prévost, Sophie Sacquin‐Mora · 2021 · Proteins Structure Function and Bioinformatics
49. Histological and Top-Down Proteomic Analyses of the Visual Pathway in the Cuprizone Demyelination Model
    Almuslehi, Mohammed S. M., Sen, Monokesh K., Shortland, Peter J., Mahns, David A., Coorssen, Jens R. · 2022 · Journal of Molecular Neuroscience
50. Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities
    Sébastien Leblanc, Marie A. Brunet, Jean‐François Jacques, Amina M. Lekehal, Andréa Duclos, Alexia Tremblay, Alexis Bruggeman-Gascon, Sondos Samandi, Mylène Brunelle, Alan Arthur Cohen et al. · 2022 · Genomics Proteomics & Bioinformatics
51. Cross‐Wired Memristive Crossbar Array for Effective Graph Data Analysis
    Yoon Ho Jang, Janguk Han, Sung Keun Shim, Sunwoo Cheong, Soo Hyung Lee, Joon‐Kyu Han, Cheol Seong Hwang · 2023 · Advanced Materials
52. Identification and visualization of protein binding regions with the ArDock server
    Sébastien Reille, Mélanie Garnier, Xavier Robert, Patrice Gouet, Juliette Martin, Guillaume Launay · 2018 · Nucleic Acids Research
53. Structural insights into Beclin 1 interactions with it's regulators for autophagy modulation
    Debapriyo Sarmadhikari, Shailendra Asthana · 2025 · Computational and Structural Biotechnology Journal
54. Hierarchical representation for PPI sites prediction
    Michela Quadrini, Sebastian Daberdaku, Carlo Ferrari · 2022 · BMC Bioinformatics
55. Protein-Protein Interactions of Phosphodiesterases
    Mayasah Y. Al-Nema, Anand Gaurav · 2019 · Current Topics in Medicinal Chemistry
56. TurboID‐mediated proximity labeling for screening interacting proteins of FIP37 in Arabidopsis
    Xiaofang Li, Yanping Wei, Qili Fei, G Fu, Yu Gan, Chuanlin Shi · 2023 · Plant Direct
57. Analysis of Protein-Protein Interaction Networks through Computational Approaches
    Ying Han, Liang Cheng, Weiju Sun · 2019 · Protein and Peptide Letters
58. HPIPred: Host–pathogen interactome prediction with phenotypic scoring
    Javier Macho Rendón, R. R. Rios, Marc Torrent · 2022 · Computational and Structural Biotechnology Journal
59. Genetic architecture of hippocampus subfields volumes in Alzheimer’s disease
    Jiahui Cai, Weixue Xiong, Xueqin Wang, Haizhu Tan, the Alzheimer’s Disease Neuroimaging Initiative (ADNI) Database · 2023 · CNS Neuroscience & Therapeutics
60. Predicting Protein–Protein Interfaces that Bind Intrinsically Disordered Protein Regions
    Eric T. C. Wong, Jörg A. Gsponer · 2019 · Journal of Molecular Biology
61. Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products
    Robert Esch, Rainer Merkl · 2020 · BMC Bioinformatics
62. Partners in crime: POPX2 phosphatase and its interacting proteins in cancer
    Pu Rum Kim, Songjing Zhang, Muhammad Bakhait Bin Rahmat, Cheng-Gee Koh · 2020 · Cell Death and Disease
63. Novel Development of Predictive Feature Fingerprints to Identify Chemistry-Based Features for the Effective Drug Design of SARS-CoV-2 Target Antagonists and Inhibitors Using Machine Learning
    Kelvin Cooper, Christopher Baddeley, Bernie French, Katherine Gibson, James Golden, Thiam Lee, Sadrach Pierre, Brent Weiss, Jason Yang · 2021 · ACS Omega
64. Quantitative global proteome and phosphorylome analyses reveal potential biomarkers in kidney cancer
    Liwei Xu, Zeyi Lu, Shicheng Yu, Gonghui Li, Yuanlei Chen · 2021 · Oncology Reports
65. Probing the Druggablility on the Interface of the Protein–Protein Interaction and Its Allosteric Regulation Mechanism on the Drug Screening for the CXCR4 Homodimer
    Liting Shen, Yuan Yuan, Yanzhi Guo, Menglong Li, Chuan Li, Xuemei Pu · 2019 · Frontiers in Pharmacology
66. Using Surface Hydrophobicity Together with Empirical Potentials to Identify Protein–Protein Binding Sites: Application to the Interactions of E-cadherins
    Robert L. Jernigan, Pranav M. Khade, Ambuj Kumar, Andrzej Kloczkowski · 2022 · Methods in molecular biology
67. Cold spots are universal in protein–protein interactions
    Sagara N.S. Gurusinghe, Ben Oppenheimer, Julia M. Shifman · 2022 · Protein Science
68. Recognition of a Flexible Protein Loop in Taspase 1 by Multivalent Supramolecular Tweezers
    Alexander Höing, Abbna Kirupakaran, Christine Beuck, Marius Pörschke, Felix C. Niemeyer, Theresa Seiler, Laura Hartmann, Peter Bayer, Thomas H. Schrader, Shirley K. Knauer · 2022 · Biomacromolecules
69. Unraveling the role of physicochemical differences in predicting protein–protein interactions
    Hamid Teimouri, Angela Medvedeva, Anatoly B. Kolomeisky · 2024 · The Journal of Chemical Physics
70. Biological Systems as Heterogeneous Information Networks: A Mini-review and Perspectives
    Koki Tsuyuzaki, Itoshi Nikaido · 2017 · arXiv (Cornell University)
71. Theoretical Study of the Molecular Mechanism of Maxingyigan Decoction Against COVID-19: Network Pharmacology-based Strategy
    Mingzhu Wang, Deyu Fu, Lei Yao, Jianhua Li · 2020 · Combinatorial Chemistry & High Throughput Screening
72. Construction of Ultralarge Two-Dimensional Fluorescent Protein Arrays via a Reengineered Rhodamine B-Based Molecular Tool
    Xiumei Li, Ruizhen Tian, Yuancheng Ji, Shengda Liu, Xiaojia Jiang, Fei Li, Quan Luo, Chunxi Hou, Jiayun Xu, Junqiu Liu · 2021 · ACS Macro Letters
73. Atomistic Insights into the Formation of Nonspecific Protein Complexes during Electrospray Ionization
    Elnaz Aliyari, Lars Konermann · 2021 · Analytical Chemistry
74. Interactome of SARS-CoV-2 Modulated Host Proteins With Computationally Predicted PPIs: Insights From Translational Systems Biology Studies
    Kalyani Bindu Karunakaran, N. Balakrishnan, Madhavi K. Ganapathiraju · 2022 · Frontiers in Systems Biology
75. Protein-protein interactions in paralogues: Electrostatics modulates specificity on a conserved steric scaffold
    Stefan M. Ivanov, Andrew Cawley, Roland G. Huber, Peter John Bond, Jim Warwicker · 2017 · PLoS ONE
76. Disulfide Click Reaction for Stapling of S‐terminal Peptides
    Qing Yu, Leiyang Bai, Xuefeng Jiang · 2023 · Angewandte Chemie
77. Unlocking Trehalose's versatility: A comprehensive Journey from biosynthesis to therapeutic applications
    Amandeep Kaur, Sukhwinder Singh, Sukesh Chander Sharma · 2024 · Experimental Cell Research
78. Investigating the outcomes of virus coinfection within and across host species
    Ryan M. Imrie, Sarah K. Walsh, Katherine Roberts, Joanne Lello, Ben Longdon · 2023 · PLoS Pathogens
79. Fluorescence “Turn-on” Lectin Sensors Fabricated by Ligand-Assisted Labeling Probes for Detecting Protein–Glycoprotein Interactions
    Pei‐Jhen Li, Mohammed Tarique Anwar, Chen‐Yo Fan, Duane S. Juang, Hsin‐Yi Lin, Tsung‐Che Chang, Sachin Kisan Kawade, Hsiang-Jung Chen, Yu‐Ju Chen, Kui‐Thong Tan et al. · 2019 · Biomacromolecules
80. Getting to know each other: PPIMem, a novel approach for predicting transmembrane protein-protein complexes
    Georges Khazen, Aram Gyulkhandanian, Tina Issa, Rachid C. Maroun · 2021 · Computational and Structural Biotechnology Journal
81. Protein Interaction Network Reconstruction with a Structural Gated Attention Deep Model by Incorporating Network Structure Information
    Fei Zhu, Feifei Li, Lei Deng, Fanwang Meng, Zhongjie T. Liang · 2022 · Journal of Chemical Information and Modeling
82. Network Medicine: From Conceptual Frameworks to Applications and Future Trends
    Enes Sefa Ayar, Sina Dadmand, Nurcan Tunçbağ · 2023 · IEEE Transactions on Molecular Biological and Multi-Scale Communications
83. Computational Analysis of Non‐covalent Interactions in Phycocyanin Subunit Interfaces
    Luka M. Breberina, Mario V. Zlatović, Milan R. Nikolic, Srđan Đ. Stojanović · 2019 · Molecular Informatics
84. Calculation of salt-dependent free energy of binding of β-lactoglobulin homodimer formation and mechanism of dimer formation using molecular dynamics simulation and three-dimensional reference interaction site model (3D-RISM): diffuse salt ions and non-polar interactions between the monomers favor the dimer formation
    Rakesh Kumar Srivastava, Mausumi Chattopadhyaya, Pradipta Bandyopadhyay · 2019 · Physical Chemistry Chemical Physics
85. Identification of potential therapeutic targets for COVID-19 through a structural-based similarity approach between SARS-CoV-2 and its human host proteins
    Alvea Tasneem, Armiya Sultan, Prithvi Kumar Singh, Hridoy Ranjan Bairagya, Hassan Hussain Almasoudi, Abdulfattah Y. Alhazmi, Abdulkarim S. Binshaya, Mohammed Ageeli Hakami, Bader Saud Alotaibi, Alaa Abdulaziz Eisa et al. · 2024 · Frontiers in Genetics
86. Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces
    Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo · 2022 · Journal of Chemical Information and Modeling
87. Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions
    Ibrahim Berber, Cesim Erten, Hilal Kazan · 2023 · IEEE Transactions on Computational Biology and Bioinformatics
88. Hierarchical Representation and Graph Convolutional Networks for the Prediction of Protein–Protein Interaction Sites
    Michela Quadrini, Sebastian Daberdaku, Carlo Ferrari · 2020 · Lecture notes in computer science
89. Approaches for network based drug discovery
    Priyanka Jayachandran, Suganya Ilango, Biswaranjan Paital, Shravani Bhanja, Ramalingam Nirmaladevi · 2021 · Frontiers in Bioscience-Scholar
90. Identification of hot regions in hub protein–protein interactions by clustering and PPRA optimization
    Xiaoli Lin, Xiaolong Zhang · 2021 · BMC Medical Informatics and Decision Making
91. Protein–Protein Interactions: The Structural Foundation of Life Complexity
    Luisa Di Paola, Alessandro Giuliani · 2017 · Encyclopedia of Life Sciences
92. Network-Based Analysis for Biological Discovery
    Lokesh P. Tripathi, Y. Ann Chen, Kenji Mizuguchi, Yoichi Murakami · 2018 · Elsevier eBooks
93. Evaluation of Methods for Protein Representation Learning: A Quantitative Analysis
    Serbülent Ünsal, Heval Ataş, Muammer Albayrak, Kemal Turhan, Aybar C. Acar, Tunca Doğan · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
94. Tunable Cell Surface Proximity Labeling via Photocatalytic and Enzymatic Activation of Fast Bioorthogonal Chemistry
    Samuel L. Scinto, Colette A. Makara, Minnie Nguyen, Paramesh K. Ramaraj, Yixin Xie, Colin Thorpe, Graham M. West, Christopher W. am Ende, Yingrong Xu, Joseph M. Fox · 2026 · Journal of the American Chemical Society
95. Interactomic Analyses and a Reverse Engineering Study Identify Specific Functional Activities of One-to-One Interactions of the S1 Subunit of the SARS-CoV-2 Spike Protein with the Human Proteome
    Giovanni Colonna · 2024 · Biomolecules
96. Next-Generation Techniques for Determination of Protein-Protein Interactions: Beyond the Crystal Structure
    Rachel Carter, Alessandra Luchini, Lance A. Liotta, Amanda N Haymond · 2019 · Current Pathobiology Reports
97. QM/MM study of N501 involved intermolecular interaction between SARS-CoV-2 receptor binding domain and antibody of human origin
    Yuemin Liu, Hana F. Sulaiman, Bruce R. Johnson, Rulong Ma, Yunxiang Gao, Harshica Fernando, Ananda S. Amarasekara, Andrea Ashley-Oyewole, Hua‐Jun Fan, Heaven N. Ingram et al. · 2023 · Computational Biology and Chemistry
98. Predictive Models and Impact of Interfacial Contacts and Amino Acids on Protein–Protein Binding Affinity
    C. Yi, M. L. Taylor, J. Ziebarth, Yong-Mei Wang · 2023 · bioRxiv
99. Detecting ligand interactions in real time on living bacterial cells
    João Crispim Encarnação, Tim Paul Schulte, Adnane Achour, Hanna Björkelund, Karl Andersson · 2018 · Applied Microbiology and Biotechnology
100. In Vivo Quantitative Estimation of DNA-Dependent Interaction of Sox2 and Oct4 Using BirA-Catalyzed Site-Specific Biotinylation
     Arman Kulyyassov, Vasily V. Ogryzko · 2020 · Biomolecules