Can Generative-Model-Based Drug Design Become a New Normal in Drug Discovery?
Abstract
It is still rare that AI application examples with full DMTA (Design, Make, Test, Analysis) outcomes are reported. A recent study highlights that a generative model could be applied in the drug discovery process through an example in which ideas generated by an AI generative model were confirmed by following wet-lab works.
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AI/ML-based generative models are being incorporated into realistic experimental settings despite initial limitations and criticisms.
“Progressively, and despite initial limitations and criticisms,160 AI/ML-based generative models are being incorporated into realistic experimental settings.”
From Advancing Targeted Protein Degradation via Multiomics Profiling and Artificial Intelligence (2023) · cites this paper as [160]
Cites
Deep learning enables rapid identification of potent DDR1 kinase inhibitors
Zhavoronkov, A., Ivanenkov, Y. A., Aliper, A., Veselov, M. S., Aladinskiy, V. A., Aladinskaya, A. V., Terentiev, V. A., Polykovskiy, D. A., Kuznetsov, M. D., Asadulaev, A., et al. (2019) · Nature Biotechnology · doi:10.1038/s41587-019-0224-x · Cited by 1,573 · see citing works
Molecular de-novo design through deep reinforcement learning
Olivecrona, M., Blaschke, T., Engkvist, O., & Chen, H. (2017) · Journal of Cheminformatics · doi:10.1186/s13321-017-0235-x · Cited by 1,358 · see citing works
Self-citationAutomated design of ligands to polypharmacological profiles
Besnard, J., Ruda, G. F., Setola, V., Abecassis, K., Rodriguiz, R. M., Huang, X.-P., Norval, S., Sassano, M. F., Shin, A. I., Webster, L. A., et al. (2012) · Nature · doi:10.1038/nature11691 · Cited by 832 · see citing works
<i>De Novo</i> Design of Bioactive Small Molecules by Artificial Intelligence
Merk, D., Friedrich, L., Grisoni, F., & Schneider, G. (2018) · Molecular Informatics · doi:10.1002/minf.201700153 · Cited by 373 · see citing works
SMILES-based deep generative scaffold decorator for de-novo drug design
Arús‐Pous, J., Patronov, A., Bjerrum, E. J., Tyrchan, C., Reymond, J., Chen, H., & Engkvist, O. (2020) · Journal of Cheminformatics · doi:10.1186/s13321-020-00441-8 · Cited by 204 · see citing works
Self-citationStructure-based de novo drug design using 3D deep generative models
Li, Y., Pei, J., & Lai, L. (2021) · Chemical Science · doi:10.1039/d1sc04444c · Cited by 176 · see citing works
Tan, X., Li, C., Yang, R., Zhao, S., Li, F., Li, X., Chen, L., Wan, X., Liu, X., Yang, T., et al. (2021) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.1c01205 · Cited by 68 · see citing works
Reaction-Driven De Novo Design, Synthesis and Testing of Potential Type II Kinase Inhibitors
Schneider, G., Geppert, T., Hartenfeller, M., Reisen, F., Klenner, A., Reutlinger, M., Hähnke, V. D., Hiss, J. A., Zettl, H., Keppner, S., et al. (2011) · Future Medicinal Chemistry · doi:10.4155/fmc.11.8 · Cited by 40 · see citing works
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Kanbach, D. K., Heiduk, L., Blueher, G., Schreiter, M., & Lahmann, A. D. F. (2023) · Review of Managerial Science · doi:10.1007/s11846-023-00696-z · Cited by 558 · see citing works
Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR
Tropsha, A., Isayev, O., Varnek, A. A., Schneider, G., & Cherkasov, A. R. (2023) · Nature Reviews Drug Discovery · doi:10.1038/s41573-023-00832-0 · Cited by 423 · see citing works
Application of Computational Biology and Artificial Intelligence in Drug Design
Zhang, Y., Luo, M., Wu, P., Wu, S., Lee, T.-Y., & Bai, C. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232113568 · Cited by 160 · see citing works
Leveraging artificial intelligence in vaccine development: A narrative review
Olawade, D. B., Teke, J., Fapohunda, O., Weerasinghe, K., Usman, S. O., Ige, A. O., & David-Olawade, A. C. (2024) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2024.106998 · Cited by 149 · see citing works
Recent advances from computer-aided drug design to artificial intelligence drug design
Wang, K., Huang, Y., Wang, Y., You, Q., & Wang, L. (2024) · RSC Medicinal Chemistry · doi:10.1039/d4md00522h · Cited by 54 · see citing works
Advancing Targeted Protein Degradation via Multiomics Profiling and Artificial Intelligence
Duran-Frigola, M., Cigler, M., & Winter, G. E. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.2c11098 · Cited by 50 · see citing works
Yu, Y., Huang, J., He, H., Han, J., Ye, G., Xu, T., Sun, X., Chen, X., Ren, X., Li, C., et al. (2023) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.2c00515 · Cited by 44 · see citing works
Thomas, M. C., O’Boyle, N. M., Bender, A., & de Graaf, C. (2024) · Journal of Cheminformatics · doi:10.1186/s13321-024-00861-w · Cited by 39 · see citing works
Generative organic electronic molecular design informed by quantum chemistry
Li, C.-H., & Tabor, D. P. (2023) · Chemical Science · doi:10.1039/d3sc03781a · Cited by 21 · see citing works
Analyzing The Impact of Generative AI on IT Employee Performance
Rafi, M. S., Aitken, J. M., Fatah, T. D., & Mailangkay, A. B. L. (2024) · International Conference on Creative Communication and Innovative Technology (ICCIT) · doi:10.1109/iccit62134.2024.10701171 · Cited by 9 · see citing works
Application scenario-oriented molecule generation platform developed for drug discovery
Zheng, L., Shi, F., Peng, C., Xu, M., Fan, F., Li, Y., Zhang, L., Du, J., Wang, Z., Lin, Z., et al. (2024) · Methods · doi:10.1016/j.ymeth.2023.12.009 · Cited by 7 · see citing works
A Survey on Evolutionary Computation-Based Drug Discovery
Yu, Q., Lin, Q., Ji, J., Zhou, W., He, S., Zhu, Z., & Tan, K. C. (2024) · IEEE Transactions on Evolutionary Computation · doi:10.1109/tevc.2024.3382145 · Cited by 6 · see citing works
Durojaye, O. A., Bellah, S. F., Uzoeto, H. O., Okoro, N. O., Cosmas, S., Ajima, J. N., Arazu, A. V., Ezechukwu, S. P., Ezechukwu, C. S., & Odiba, A. S. (2025) · Journal of Molecular Modeling · doi:10.1007/s00894-025-06480-y · Cited by 2 · see citing works
Li, C.-H., & Tabor, D. P. (2023) · ChemRxiv · doi:10.26434/chemrxiv-2023-bgcjg-v2 · Cited by 1 · see citing works
MolScore: A scoring and evaluation framework for de novo drug designPreprint
Thomas, M. C., O’Boyle, N. M., Bender, A., & de Graaf, C. (2023) · ChemRxiv · doi:10.26434/chemrxiv-2023-c4867 · Cited by 1 · see citing works
MolScore: A scoring and evaluation framework for de novo drug designPreprint
Thomas, M. C., O’Boyle, N. M., Bender, A., & de Graaf, C. (2024) · ChemRxiv · doi:10.26434/chemrxiv-2023-c4867-v2 · Cited by 1 · see citing works
Deep learning methodologies in drug design
Sarimveis, H., Gousiadou, C., Doganis, P., Karatzas, P., Sotiropoulos, I., & Tsiros, P. (2023) · Elsevier eBooks · doi:10.1016/b978-0-443-18638-7.00030-x
Li, C.-H., & Tabor, D. P. (2023) · ChemRxiv · doi:10.26434/chemrxiv-2023-bgcjg
The Role of GenAI in Business Model Innovation
Tripathi, A. A., Dhote, T., Pathak, P., Pillai, S., & Yadav, V. (2025) · Lecture notes in networks and systems · doi:10.1007/978-981-96-6060-5_3
Thomas, M., O’Boyle, N. M., Bender, A., & de Graaf, C. (2024) · Figshare · doi:10.6084/m9.figshare.26727727
BindingDB (2026) · UC San Diego · doi:10.7270/q2q52vj4
- Authors
- Chen, H.
- Affiliations
- Guangzhou Regenerative Medicine and Health Guangdong Laboratory (CN)
- Corresponding author
- Chen, Hongming
- ORCID
- Chen, Hongming
- Venue
- Journal of Medicinal Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2021-12-16
- Volume
- 65
- Issue
- 1
- Pages
- 100-102
- ISSN
- 0022-2623 (ISSN-L)
- 1520-4804
- OpenAlex
- W4200240318
- Cited by
- 21
- References
- 8
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 8 · 2023: 9 · 2022: 1
- FWCI
- 2.50
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Journal of Medicinal Chemistry (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Physical Sciences › Computer Science › Computational Theory and Mathematics › Computational Drug Discovery Methods
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
- Keywords
- generative models, artificial intelligence in drug discovery, generative drug design, wet-lab validation
- MeSH terms
- Deep Learning, Artificial Intelligence, Humans, Drug Design, Neural Networks, Computer, Drug Discovery
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