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DNA Replication Fidelity with 8-Oxodeoxyguanosine Triphosphate
Abstract
Oxidative metabolism is known to generate mutagenic compounds within cells, among which is 8-oxodeoxyguanosine. Here the mutagenic potential of the triphosphate form of this base analog (8-O-dGTP) is investigated during replication in vitro of the lacZ alpha-complementation sequence in M13mp2 DNA. Adding 8-O-dGTP at equimolar concentration with the normal dNTPs to polymerization reactions decreases the fidelity of DNA synthesis by exonuclease-deficient Klenow, T4, and Thermus thermophilus DNA polymerases. Sequence analysis of mutants suggests that 8-O-dGMP is misincorporated opposite template adenines, yielding A-->C transversions. The degree of polymerase selectivity against this error is enzyme-dependent, with rates varying by > 25-fold. To determine if the A.8-O-dGMP mispair is proofread, a direct comparison of the fidelity of proofreading-proficient and proofreading-deficient Klenow and T4 DNA polymerases was made. Although the exonuclease activity of Klenow polymerase did not substantially reduce overall misincorporation of 8-O-dGMP, misincorporation was lower for the proofreading-proficient T4 enzyme as compared to its proofreading-deficient derivative. These data suggest that the A.8-O-dGMP mispair can be proofread. The mutagenic potential of 8-O-dGTP with eukaryotic systems was also examined. Misincorporation of 8-O-dGTP opposite adenine was observed during SV40 origin-dependent replication of double-stranded DNA in HeLa cell extracts. When present during replication at a concentration equal to the four normal dNTPs, 8-O-dGTP was at least 13-fold more mutagenic for A.T-->C.G transversions than was a 100-fold excess of normal dGTP.(ABSTRACT TRUNCATED AT 250 WORDS)
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“MtDNA oxidation, in turn, renders mtDNA more susceptible to mutation because oxidized bases are misread during replication and this leads to nucleotide substitutions [118–120].”
From Brain aging, Alzheimer's disease, and mitochondria (2011) · cites this paper as [120]
Citations
Cites
Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
Shibutani, S., Takeshita, M., & Grollman, A. P. (1991) · Nature · doi:10.1038/349431a0 · Cited by 2,224
8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G-T and A-C substitutions.
Cheng, K. C., Cahill, D. S., Kasai, H., Nishimura, S., & Loeb, L. A. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)48474-8 · Cited by 1,844
Mitochondrial Genetics: A Paradigm for Aging and Degenerative Diseases?
Wallace, D. C. (1992) · Science · doi:10.1126/science.1533953 · Cited by 1,262
Hydroxylation of deoxyguanosine at the C-8 position by ascorbic acid and other reducing agents
Kasai, H., & Nishimura, S. (1984) · Nucleic Acids Research · doi:10.1093/nar/12.4.2137 · Cited by 952
MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis
Maki, H., & Sekiguchi, M. (1992) · Nature · doi:10.1038/355273a0 · Cited by 901
FIDELITY MECHANISMS IN DNA REPLICATION
Echols, H., & Goodman, M. F. (1991) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.60.070191.002401 · Cited by 712
Michaels, M. L., & Miller, J. H. (1992) · Journal of Bacteriology · doi:10.1128/jb.174.20.6321-6325.1992 · Cited by 697
8-oxoguanine (8-hydroxyguanine) DNA glycosylase and its substrate specificity.
Tchou, J. C., Kasai, H., Shibutani, S., Chung, M., Laval, J., Grollman, A. P., & Nishimura, S. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.11.4690 · Cited by 689
Wood, M. L., Dizdaroğlu, M., Gajewski, E., & Essigmann, J. M. (1990) · Biochemistry · doi:10.1021/bi00482a011 · Cited by 684
Michaels, M. L., Cruz, C., Grollman, A. P., & Miller, J. H. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.15.7022 · Cited by 598
Sakumi, K., Furuichi, M., Tsuzuki, T., Kakuma, T., KAWABATA, S., Maki, H., & Sekiguchi, M. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)49494-5 · Cited by 438
Moriya, M. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.3.1122 · Cited by 418
The specific mutagenic effect of base analogues on Phage T4
Freese, E. (1959) · Journal of Molecular Biology · doi:10.1016/s0022-2836(59)80038-3 · Cited by 392
Initiation Of Eukaryotic DNA Replication In Vitro
Stillman, B. (1989) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.5.1.197 · Cited by 343
Genetic and Crystallographic Studies of the 3′,5′-Exonucleolytic Site of DNA Polymerase I
Derbyshire, V., Freemont, P. S., Sanderson, M. R., Beese, L. S., Friedman, J. M., Joyce, C. M., & Steitz, T. A. (1988) · Science · doi:10.1126/science.2832946 · Cited by 341
Kunkel, T. A. (1985) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)89090-1 · Cited by 316
Self-citationMo, J. Y., Maki, H., & Sekiguchi, M. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.22.11021 · Cited by 315
A repair system for 8-Oxo-7,8-dihydrodeoxyguanine
Michaels, M. L., Tchou, J. C., Grollman, A. P., & Miller, J. H. (1992) · Biochemistry · doi:10.1021/bi00160a004 · Cited by 312
Moriya, M., Ou, C., Bodepudi, V., Johnson, F., Takeshita, M., & Grollman, A. P. (1991) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(91)90067-y · Cited by 308
Kouchakdjian, M., Bodepudi, V., Shibutani, S., Eisenberg, M., Johnson, F., Grollman, A. P., & Patel, D. J. (1991) · Biochemistry · doi:10.1021/bi00219a034 · Cited by 298
The unusual mutagenic specificity of an E. Coli mutator gene.
Yanofsky, C., Cox, E. H., & Horn, V. (1966) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.55.2.274 · Cited by 270
The in vitro replication of DNA containing the SV40 origin.
Hurwitz, J., Dean, F. B., Kwong, A. D., & Lee, S. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)44708-9 · Cited by 255
Li, J. J., & Kelly, T. J. (1985) · Molecular and Cellular Biology · doi:10.1128/mcb.5.6.1238 · Cited by 205
The mutational specificity of DNA polymerases-alpha and -gamma during in vitro DNA synthesis.
Kunkel, T. A. (1985) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)38958-5 · Cited by 176
Self-citationThe fidelity of DNA synthesis catalyzed by derivatives of Escherichia coli DNA polymerase I.
Bębenek, K., Joyce, C. M., Fitzgerald, M. P., & Kunkel, T. A. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)77430-9 · Cited by 175
Self-citationKelly, T. J. (1988) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)81296-6 · Cited by 172
Studies on the biochemical basis of spontaneous mutation
Bessman, M. J., Muzyczka, N., Goodman, M. F., & Schnaar, R. L. (1974) · Journal of Molecular Biology · doi:10.1016/0022-2836(74)90491-4 · Cited by 169
Kunkel, T. A., & Soni, A. (1988) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)68947-1 · Cited by 167
Self-citationMoriya, M., & Grollman, A. P. (1993) · Molecular and General Genetics MGG · doi:10.1007/bf00281603 · Cited by 141
Bhatnagar, S. K., & Bessman, M. J. (1988) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)68400-5 · Cited by 133
Fidelity of mammalian DNA replication and replicative DNA polymerases
Thomas, D. C., Roberts, J. D., Sabatino, R. D., Myers, T. W., Tan, C. K., Downey, K. M., So, A. G., Bambara, R. A., & Kunkel, T. A. (1991) · Biochemistry · doi:10.1021/bi00115a003 · Cited by 121
Self-citationA specific role of MutT protein: to prevent dG.dA mispairing in DNA replication.
Akiyama, M., Maki, H., Sekiguchi, M., & Horiuchi, T. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.11.3949 · Cited by 119
Frey, M. W., Nossal, N. G., Capson, T. L., & Benkovic, S. J. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.7.2579 · Cited by 108
Recent studies of the fidelity of DNA synthesis
Kunkel, T. A., & Bębenek, K. (1988) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/0167-4781(88)90020-6 · Cited by 98
Self-citationBiological asymmetries and the fidelity of eukaryotic DNA replication
Kunkel, T. A. (1992) · BioEssays · doi:10.1002/bies.950140503 · Cited by 94
Self-citationFidelity of a human cell DNA replication complex.
Roberts, J. D., & Kunkel, T. A. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.19.7064 · Cited by 90
Self-citationThe minimal kinetic mechanism for misincorporation by DNA polymerase I (Klenow fragment)
Eger, B. T., & Benkovic, S. J. (1992) · Biochemistry · doi:10.1021/bi00153a016 · Cited by 79
Suppression of Chemical Mutagenesis in Bacteriophage T4 by Genetically Modified DNA Polymerases
Drake, J. W., & Greening, E. O. (1970) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.66.3.823 · Cited by 75
Joyce, C. M., Sun, X. C., & Grindley, N. D. F. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)35792-2 · Cited by 74
Schaaper, R. M., & Dunn, R. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)49248-4 · Cited by 54
Pavlov, Y. I., Noskov, V. N., Lange, E., Moiseeva, E. V., Pshenichnov, M. R., & Николаевич, Х.-Б. Н. (1991) · Mutation Research/Environmental Mutagenesis and Related Subjects · doi:10.1016/0165-1161(91)90343-7 · Cited by 47
Self-citationFowler, R. G., Amutan, M., & Isbell, R. J. (1992) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/0027-5107(92)90015-t · Cited by 10
DNA sequencing with thermostable Tet DNA polymerase fromThermus thermophilus
Bechtereva, T. A., Pavlov, Y. I., Kramorov, V. I., Migunova, B., & Киселев, О. И. (1989) · Nucleic Acids Research · doi:10.1093/nar/17.24.10507 · Cited by 9
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Caliri, A. W., Tommasi, S., & Nia, A. B. (2021) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2021.108365 · Cited by 750
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Metadata
- Authors
- Pavlov, Y. I., Minnick, D. T., Izuta, S., & Kunkel, T. A.
- Affiliations
- National Institutes of Health (US)
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 1994-04-19
- Volume
- 33
- Issue
- 15
- Pages
- 4695-4701
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- OpenAlex
- W1965072222
- Cited by
- 132
- References
- 43
- Citations by year
- 2026: 2 · 2025: 2 · 2024: 2 · 2021: 2 · 2020: 1 · 2019: 2 · 2018: 1 · 2017: 1 · 2016: 5 · 2015: 1 · 2014: 1 · 2013: 1
- FWCI
- 3.39
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Keywords
- 8-hydroxy-2'-deoxyguanosine, DNA replication fidelity, oxidative DNA damage, mutagenesis, misincorporation, DNA polymerase proofreading, exonuclease activity, Klenow fragment, T4 DNA polymerase, HeLa cell extracts, base analogs
- MeSH terms
- Base Composition, Deoxyguanine Nucleotides, DNA, DNA Polymerase I, DNA-Directed DNA Polymerase, DNA Replication, Escherichia coli, Glycosylation, Transfection, Mutagenesis, Thermus thermophilus, Bacteriophage T4
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