Intrinsic Disorder and Protein Function

Dunker, A. Keith, Brown, Celeste J., Lawson, J. David, Iakoucheva, Lilia M., Obradović, Zoran·2002·Biochemistry

Cited by (1,001)

Items 301–400 of 1,001

  1. Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo
    Alexander V. Fonin, April L. Darling, Irina М. Kuznetsova, Туроверов Константин Константинович, Vladimir Nikolaevich Uversky · 2018 · Cellular and Molecular Life Sciences
  2. High Affinity Interaction with Filamin A Protects against Calcium-sensing Receptor Degradation
    Mingliang Zhang, Gerda E. Breitwieser · 2005 · Journal of Biological Chemistry
  3. Mimicking the Plant Cell Interior under Water Stress by Macromolecular Crowding: Disordered Dehydrin Proteins Are Highly Resistant to Structural Collapse
    Jean‐Marie Mouillon, Sylvia K. Eriksson, Pia Harryson · 2008 · PLANT PHYSIOLOGY
  4. Ligand Clouds around Protein Clouds: A Scenario of Ligand Binding with Intrinsically Disordered Proteins
    Fan Jin, Yu Chen, Luhua Lai, Zhirong Liu · 2013 · PLoS Computational Biology
  5. Nuclear transport receptor binding avidity triggers a self-healing collapse transition in FG-nucleoporin molecular brushes
    Rafael L. Schoch, Larisa E. Kapinos, Roderick Y. H. Lim · 2012 · Proceedings of the National Academy of Sciences
  6. Prediction of Protein Domain with mRMR Feature Selection and Analysis
    Biqing Li, Le‐Le Hu, Lei Chen, Kaiyan Feng, Yu‐Dong Cai, Kuo‐Chen Chou · 2012 · PLoS ONE
  7. The domain architecture of large guanine nucleotide exchange factors for the small GTP-binding protein Arf
    Barbara Mouratou, Valérie Biou, Alexandra Joubert, Jean Cohen, David J. Shields, Niko Geldner, Gerd Jürgens, Paul Melançon, Jacqueline Cherfils · 2005 · BMC Genomics
  8. Modularity of intrinsic disorder in the human proteome
    Melissa M. Pentony, David T. Jones · 2009 · Proteins Structure Function and Bioinformatics
  9. A comprehensive overview of computational protein disorder prediction methods
    Xin Deng, Jesse Eickholt, Jianlin Jack Cheng · 2011 · Molecular BioSystems
  10. Multiscale Ensemble Modeling of Intrinsically Disordered Proteins: p53 N-Terminal Domain
    Tsuyoshi Terakawa, Shoji Takada · 2011 · Biophysical Journal
  11. Disease mutations in disordered regions—exception to the rule?
    Vladimir Vacic, Lilia M. Iakoucheva · 2011 · Molecular BioSystems
  12. A Mass-Spectrometry-Based Framework To Define the Extent of Disorder in Proteins
    Rebecca Beveridge, Sam Covill, Kamila J. Pacholarz, Jason M. D. Kalapothakis, Cait E. MacPhee, Perdita E. Barran · 2014 · Analytical Chemistry
  13. Wrecked regulation of intrinsically disordered proteins in diseases: pathogenicity of deregulated regulators
    Vladimir Nikolaevich Uversky · 2014 · Frontiers in Molecular Biosciences
  14. Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy
    Robert C. Schneider, Jie‐rong Huang, Mingxi Yao, Guillaume Communie, Valéry Ozenne, Luca Mollica, Loïc Salmon, Malene Ringkjøbing Jensen, Martin J Blackledge · 2011 · Molecular BioSystems
  15. Functional Analysis of Human Hub Proteins and Their Interactors Involved in the Intrinsic Disorder-Enriched Interactions
    Gang Hu, Zhonghua Wu, Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2017 · International Journal of Molecular Sciences
  16. Comparative Genomics of DNA Fragments from Six Antarctic Marine Planktonic Bacteria
    Joseph J. Grzymski, Brandon J. Carter, Edward F. DeLong, Robert A. Feldman, Amir Ghadiri, Alison E. Murray · 2006 · Applied and Environmental Microbiology
  17. Structure and dynamics of a molten globular enzyme
    Konstantin V. Pervushin, Katherina Vamvaca, Beat Vögeli, Donald Hilvert · 2007 · Nature Structural & Molecular Biology
  18. A review of protein structure and gene organisation for proteins associated with mineralised tissue and calcium phosphate stabilisation encoded on human chromosome 4
    N. Laila Huq, Keith J. Cross, Men Ung, Eric Charles Reynolds · 2005 · Archives of Oral Biology
  19. Operational definition of intrinsically unstructured protein sequences based on susceptibility to the 20S proteasome
    Peter Tsvetkov, Gad Asher, Aviv Paz, Nina Bacher Reuven, Joel L. Sussman, Israel Silman, Yosef Shaul · 2007 · Proteins Structure Function and Bioinformatics
  20. UreG, a Chaperone in the Urease Assembly Process, Is an Intrinsically Unstructured GTPase That Specifically Binds Zn2+
    Barbara Zambelli, Massimiliano Stola, Francesco Musiani, Kris De Vriendt, Bart Samyn, Bart V. Devreese, Jozef VAN BEEUMEN, Paola Turano, Alexander Dikiy, Donald A. Bryant et al. · 2004 · Journal of Biological Chemistry
  21. Chromatin Condensing Functions of the Linker Histone C-Terminal Domain Are Mediated by Specific Amino Acid Composition and Intrinsic Protein Disorder
    Xu Lu, Barbara A. Hamkalo, Missag Hagop Parseghian, Jeffrey C. Hansen · 2008 · Biochemistry
  22. Visualization of Intrinsically Disordered Regions of Proteins by High‐Speed Atomic Force Microscopy
    Atsushi Miyagi, Yasuo Tsunaka, Takayuki Uchihashi, Kouta Mayanagi, Susumu Hirose, Kosuke Morikawa, Toshio Ando · 2008 · ChemPhysChem
  23. Calmodulin signaling: Analysis and prediction of a disorder‐dependent molecular recognition
    Predrag Radivojac A, Slobodan Vučetić, Timothy R. O'Connor, Vladimir Nikolaevich Uversky, Zoran Obradovic A, A. Keith Dunker · 2006 · Proteins Structure Function and Bioinformatics
  24. Measuring the Evolutionary Rewiring of Biological Networks
    Chong Shou, Nitin Bhardwaj, Hugo Y. K. Lam, Koon‐Kiu Yan, Philip M. Kim, Michael P. Snyder, Mark Gerstein · 2011 · PLoS Computational Biology
  25. Protein disorder prediction by condensed PSSM considering propensity for order or disorder
    Chung-Tsai Su, Chien‐Yu Chen, Yu‐Yen Ou · 2006 · BMC Bioinformatics
  26. Intrinsically Disordered Regions of Human Plasma Membrane Proteins Preferentially Occur in the Cytoplasmic Segment
    Yoshiaki Minezaki, Keiichi Homma, Ken Nishikawa · 2007 · Journal of Molecular Biology
  27. The O-Glycosylated Linker from the Trichoderma reesei Family 7 Cellulase Is a Flexible, Disordered Protein
    Gregg T. Beckham, Yannick J. Bomble, James F. Matthews, Courtney B. Taylor, Michael G. Resch, John M. Yarbrough, Stephen R. Decker, Lintao Bu, Xiongce Zhao, Clare McCabe et al. · 2010 · Biophysical Journal
  28. The Ambivalent Role of Proline Residues in an Intrinsically Disordered Protein: From Disorder Promoters to Compaction Facilitators
    Borja Mateos, Clara Conrad‐Billroth, Marco Schiavina, Andreas Beier, Georg Kontaxis, Robert Konrat, Isabella C. Felli, Roberta Pierattelli · 2019 · Journal of Molecular Biology
  29. Tubulin Polymerization Promoting Proteins (TPPPs): Members of a New Family with Distinct Structures and Functions
    Orsolya Vincze, Natália Tőkési, Judit Oláh, Emma Hlavanda, Ágnes Zotter, István Horváth, Attila Lehotzky, László Tirián, Katalin F. Medzihradszky, János Kovács et al. · 2006 · Biochemistry
  30. Limitations of Induced Folding in Molecular Recognition by Intrinsically Disordered Proteins
    Eszter Házy, Péter Tompa · 2009 · ChemPhysChem
  31. Targeting intrinsically disordered proteins in rational drug discovery
    Susmitha Ambadipudi, Markus Zweckstetter · 2015 · Expert Opinion on Drug Discovery
  32. Primary Contact Sites in Intrinsically Unstructured Proteins: The Case of Calpastatin and Microtubule-Associated Protein 2
    Veronika Csizmók, M. Bokor, Péter Bánki, Éva Klement, Katalin F. Medzihradszky, Péter Friedrich, Kalman Tompa, Péter Tompa · 2005 · Biochemistry
  33. Polyanions and the Proteome
    LaToya S. Jones, Brian Yazzie, Charles Russell Middaugh · 2004 · Molecular & Cellular Proteomics
  34. Single Enantiomer of YK-4-279 Demonstrates Specificity in Targeting the Oncogene EWS-FLI1
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  35. Intrinsic Disorder-Based Emergence in Cellular Biology: Physiological and Pathological Liquid-Liquid Phase Transitions in Cells
    April L. Darling, Boris Y. Zaslavsky, Vladimir Nikolaevich Uversky · 2019 · Polymers
  36. Dynamic Behavior of an Intrinsically Unstructured Linker Domain Is Conserved in the Face of Negligible Amino Acid Sequence Conservation
    Gary W. Daughdrill, Pranesh Narayanaswami, Sara H. Gilmore, Agniezka Belczyk, Celeste J. Brown · 2007 · Journal of Molecular Evolution
  37. Site-Specific Phosphorylation Induces Functionally Active Conformation in the Intrinsically Disordered N-Terminal Activation Function (AF1) Domain of the Glucocorticoid Receptor
    Anna S. Garza, Shagufta H. Khan, Praveen Kumar · 2009 · Molecular and Cellular Biology
  38. PreDisorder: ab initio sequence-based prediction of protein disordered regions
    Xin Deng, Jesse Eickholt, Jianlin Jack Cheng · 2009 · BMC Bioinformatics
  39. Kinase regulation by liquid–liquid phase separation
    Tania P. López-Palacios, Joshua Lyon Andersen · 2022 · Trends in Cell Biology
  40. Structural characterization of intrinsically disordered proteins by the combined use of NMR and SAXS
    Nathalie Sibille, Pau Bernadó · 2012 · Biochemical Society Transactions
  41. Functional classification of scaffold proteins and related molecules
    László Buday, Péter Tompa · 2010 · FEBS Journal
  42. Cell-cycle-dependent phosphorylation of the nuclear pore Nup107–160 subcomplex
    Joseph S. Glavy, Andrew N. Krutchinsky, Ileana M. Cristea, Ian C. Berke, Thomas Boehmer, Günter Blobel, Brian T. Chait · 2007 · Proceedings of the National Academy of Sciences
  43. Roles of intrinsic disorder in protein–nucleic acid interactions
    H. Jane Dyson · 2011 · Molecular BioSystems
  44. Library of Disordered Patterns in 3D Protein Structures
    Michail Yu. Lobanov, Е.И. Фурлетова, Natalya S. Bogatyreva, Ройтберг Михаил Абрамович, Oxana V. Galzitskaya · 2010 · PLoS Computational Biology
  45. Application of molecular dynamic simulation to study food proteins: A review
    Ashutosh Singh, Sai Kranthi Vanga, Valérie Orsat, Vijaya Raghavan · 2017 · Critical Reviews in Food Science and Nutrition
  46. The role of disorder in RNA binding affinity and specificity
    Diana S. M. Ottoz, Luke E. Berchowitz · 2020 · Open Biology
  47. Multiparametric Analysis of Intrinsically Disordered Proteins: Looking at Intrinsic Disorder through Compound Eyes
    Vladimir Nikolaevich Uversky, A. Keith Dunker · 2011 · Analytical Chemistry
  48. Dnmt1
    Željko M. Svedružić · 2011 · Progress in molecular biology and translational science
  49. The 133-kDa N-terminal domain enables myosin 15 to maintain mechanotransducing stereocilia and is essential for hearing
    Qing Fang, Artur A. Indzhykulian, Mirna Mustapha, Gavin P. Riordan, David F. Dolan, Thomas B. Friedman, Inna A. Belyantseva, Gregory I. Frolenkov, Sally Ann Camper, Jonathan E. Bird · 2015 · eLife
  50. Structural Characterization of the Native NH2-Terminal Transactivation Domain of the Human Androgen Receptor: A Collapsed Disordered Conformation Underlies Structural Plasticity and Protein-Induced Folding
    Derek N. Lavery, Iain J. McEwan · 2008 · Biochemistry
  51. Evaluation of disorder predictions in CASP5
    Eugene Melamud, John Moult · 2003 · Proteins Structure Function and Bioinformatics
  52. Atomistic Details of the Disordered States of KID and pKID. Implications in Coupled Binding and Folding
    Debabani Ganguly, Jianhan Chen · 2009 · Journal of the American Chemical Society
  53. Biological importance of arginine: A comprehensive review of the roles in structure, disorder, and functionality of peptides and proteins
    Munishwar Nath Gupta, Vladimir Nikolaevich Uversky · 2023 · International Journal of Biological Macromolecules
  54. Structural disorder within the replicative complex of measles virus: Functional implications
    Jean‐Marie Bourhis, Bruno Canard, Sonia Longhi · 2005 · Virology
  55. Classification and knowledge discovery in protein databases
    Predrag Radivojac A, Nitesh V. Chawla, A. Keith Dunker, Zoran Obradovic A · 2004 · Journal of Biomedical Informatics
  56. Multi-functionality of proteins involved in GPCR and G protein signaling: making sense of structure–function continuum with intrinsic disorder-based proteoforms
    Fonin, Alexander V., Darling, April L., Kuznetsova, Irina M., Turoverov, Konstantin K., Uversky, Vladimir N. · 2019 · Cellular and Molecular Life Sciences
  57. Multifunctionality of the linker histones: an emerging role for protein-protein interactions
    Steven J. McBryant, Xu Lu, Jeffrey C. Hansen · 2010 · Cell Research
  58. The transition state structure for coupled binding and folding of disordered protein domains
    Jakob Dogan, Xin Ni Mu, Åke Engström, Per Jemth · 2013 · Scientific Reports
  59. CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs
    Ian Walsh, Alberto J. M. Martín, Tomás Di Domenico, Alessandro Vullo, Gianluca Pollastri, Silvio C. E. Tosatto · 2011 · Nucleic Acids Research
  60. Modeling protein association mechanisms and kinetics
    Huan‐Xiang Zhou, Paul A. Bates · 2013 · Current Opinion in Structural Biology
  61. Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation
    Zhou, Jianhong, Zhao, Suwen, Dunker, A. Keith · 2018 · Journal of Molecular Biology
  62. The triple power of D³: Protein intrinsic disorder in degenerative diseases
    Vladimir Nikolaevich Uversky · 2014 · Frontiers in bioscience
  63. Mapping Residual Structure in Intrinsically Disordered Proteins at Residue Resolution Using Millisecond Hydrogen/Deuterium Exchange and Residue Averaging
    Theodore R. Keppel, David D. Weis · 2014 · Journal of the American Society for Mass Spectrometry
  64. Intrinsically Disordered p53 Extreme C-Terminus Binds to S100B(ββ) through “Fly-Casting”
    Jianhan Chen · 2009 · Journal of the American Chemical Society
  65. A distinct structural region of the prokaryotic ubiquitin‐like protein (Pup) is recognized by the N‐terminal domain of the proteasomal ATPase Mpa
    Markus Sutter, Frank Striebel, Fred Franz Damberger, Frédéric H.‐T. Allain, Eilika U. Weber-Ban · 2009 · FEBS Letters
  66. DNdisorder: predicting protein disorder using boosting and deep networks
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  67. Mapping Unstructured Regions and Synergistic Folding in Intrinsically Disordered Proteins with Amide H/D Exchange Mass Spectrometry
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  68. Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
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  69. Phenogenetic drift in evolution: The changing genetic basis of vertebrate teeth
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  70. Protein Disorder Prevails under Crowded Conditions
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  71. DFLpred: High-throughput prediction of disordered flexible linker regions in protein sequences
    Fanchi Meng, Lukasz Kurgan · 2016 · Bioinformatics
  72. Fast Association and Slow Transitions in the Interaction between Two Intrinsically Disordered Protein Domains
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  73. N-terminal Domains of DELLA Proteins Are Intrinsically Unstructured in the Absence of Interaction with GID1/Gibberellic Acid Receptors
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  75. Computer Simulations of Intrinsically Disordered Proteins
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  76. NMR Relaxation Studies on the Hydrate Layer of Intrinsically Unstructured Proteins
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  78. Intrinsically disordered regions of p53 family are highly diversified in evolution
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  84. Deletion of a C–terminal intrinsically disordered region of WRINKLED 1 affects its stability and enhances oil accumulation in Arabidopsis
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