Cooperative Unfolding of Compact Conformations of the Intrinsically Disordered Protein Osteopontin
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Intrinsically disordered proteins (IDPs) constitute a class of biologically active proteins that lack defined tertiary and often secondary structure. The IDP Osteopontin (OPN), a cytokine involved in metastasis of several types of cancer, is shown to simultaneously sample extended, random coil-like conformations and stable, cooperatively folded conformations. By a combination of two magnetic resonance methods, electron paramagnetic resonance and nuclear magnetic resonance spectroscopy, we demonstrate that the OPN ensemble exhibits not only characteristics of an extended and flexible polypeptide, as expected for an IDP, but also simultaneously those of globular proteins, in particular sigmoidal structural denaturation profiles. Both types of states, extended and cooperatively folded, are populated simultaneously by OPN in its apo state. The heterogeneity of the structural properties of IDPs is thus shown to even involve cooperative folding and unfolding events.
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Unliganded osteopontin interconverts between extended random coil-like conformations and a collapsed cooperatively folded state capable of generating sigmoidal structural denaturation curves.
“Unliganded osteopontin interconverts between extended, random coil-like conformations as well as a collapsed, cooperatively folded state capable of generating sigmoidal structural denaturation curves [198].”
From Intrinsically disordered proteins play diverse roles in cell signaling (2022) · cites this paper as [198]
Interactions of other proteins with osteopontin generally occur via conformational selection.
“These results suggest that interactions of other proteins with osteopontin generally occur via conformational selection [198].”
From Intrinsically disordered proteins play diverse roles in cell signaling (2022) · cites this paper as [198]
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NMRPipe: A multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., & Bax, A. (1995) · Journal of Biomolecular NMR · doi:10.1007/bf00197809 · Cited by 15,994 · see citing works
Rubinstein, M., & Colby, R. H. (2003) · doi:10.1093/oso/9780198520597.001.0001 · Cited by 5,686 · see citing works
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
Wright, P. E., & Dyson, H. J. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.3110 · Cited by 2,968 · see citing works
Application of a Theory of Enzyme Specificity to Protein Synthesis.
Koshland, D. (1958) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.44.2.98 · Cited by 2,140 · see citing works
Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T. J., Forman-Kay, J. D., & Kay, L. E. (1994) · Biochemistry · doi:10.1021/bi00185a040 · Cited by 2,094 · see citing works
Intrinsically unstructured proteins
Tompa, P. (2002) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(02)02169-2 · Cited by 2,056 · see citing works
The role of dynamic conformational ensembles in biomolecular recognition
Boehr, D. D., Nussinov, R., & Wright, P. E. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.232 · Cited by 2,008 · see citing works
Principles of Pulse Electron Paramagnetic Resonance
Schweiger, A., & Jeschke, G. (2001) · doi:10.1093/oso/9780198506348.001.0001 · Cited by 2,001 · see citing works
Natively unfolded proteins: A point where biology waits for physics
Uversky, V. N. (2002) · Protein Science · doi:10.1110/ps.4210102 · Cited by 1,815 · see citing works
Understanding protein non-folding
Uversky, V. N., & Dunker, A. K. (2010) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2010.01.017 · Cited by 1,188 · see citing works
Fuzzy complexes: polymorphism and structural disorder in protein–protein interactions
Tompa, P., & Fuxreiter, M. (2007) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2007.10.003 · Cited by 1,080 · see citing works
Reductive alkylation of amino groups in proteins
Means, G. E., & Feeney, R. E. (1968) · Biochemistry · doi:10.1021/bi00846a023 · Cited by 680 · see citing works
Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance
Jeschke, G., & Polyhach, Y. O. (2007) · Physical Chemistry Chemical Physics · doi:10.1039/b614920k · Cited by 613 · see citing works
The protein trinity—linking function and disorder
Dunker, A. K., & Obradovic, Z. (2001) · Nature Biotechnology · doi:10.1038/nbt0901-805 · Cited by 581 · see citing works
Principles of physical biochemistry
Holde, K. E. V., Johnson, W. C., & Ho, P. S. (1998) · Cited by 580 · see citing works
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
Fuxreiter, M., Simon, I., Friedrich, P., & Tompa, P. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.03.017 · Cited by 518 · see citing works
Characterization of Molecular Recognition Features, MoRFs, and Their Binding Partners
Vacic, V., Oldfield, C. J., Mohan, A., Predrag Radivojac, A., Cortese, M. S., Uversky, V. N., & Dunker, A. K. (2007) · Journal of Proteome Research · doi:10.1021/pr0701411 · Cited by 483 · see citing works
Hofmann, H., Soranno, A., Borgia, A., Gast, K., Nettels, D., & Schuler, B. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1207719109 · Cited by 480 · see citing works
Small integrin-binding ligand N-linked glycoproteins (SIBLINGs): multifunctional proteins in cancer
Bellahcène, A., Castronovo, V., Ogbureke, K. U. E., Fisher, L. W., & Fedarko, N. S. (2008) · Nature reviews. Cancer · doi:10.1038/nrc2345 · Cited by 455 · see citing works
Atomic-level characterization of disordered protein ensembles
Mittag, T., & Forman-Kay, J. D. (2007) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2007.01.009 · Cited by 436 · see citing works
Intrinsically disordered proteins from A to Z
Uversky, V. N. (2011) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2011.04.001 · Cited by 434 · see citing works
Linear motifs: Evolutionary interaction switches
Neduva, V., & Russell, R. B. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.04.005 · Cited by 352 · see citing works
Isothermal Unfolding of Globular Proteins in Aqueous Urea Solutions
Tanford, C. (1964) · Journal of the American Chemical Society · doi:10.1021/ja01064a028 · Cited by 320 · see citing works
Mittag, T., Marsh, J. A., Grishaev, A., Orlicky, S. M., Lin, H., Sicheri, F., Tyers, M., & Forman-Kay, J. D. (2010) · Structure · doi:10.1016/j.str.2010.01.020 · Cited by 268 · see citing works
Direct Conversion of EPR Dipolar Time Evolution Data to Distance Distributions
Jeschke, G., Koch, A., Jonas, U., & Godt, A. (2002) · Journal of Magnetic Resonance · doi:10.1006/jmre.2001.2498 · Cited by 241 · see citing works
Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement
Clore, G. M., Tang, C., & Iwahara, J. (2007) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2007.08.013 · Cited by 226 · see citing works
Describing intrinsically disordered proteins at atomic resolution by NMR
Jensen, M. R., Ruigrok, R. W. H., & Blackledge, M. J. (2013) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2013.02.007 · Cited by 219 · see citing works
Data analysis procedures for pulse ELDOR measurements of broad distance distributions
Jeschke, G., Panek, G., Godt, A., Bender, A., & Paulsen, H. (2004) · Applied Magnetic Resonance · doi:10.1007/bf03166574 · Cited by 194 · see citing works
Exploring the binding diversity of intrinsically disordered proteins involved in one‐to‐many binding
Hsu, W.-L., Oldfield, C. J., Xue, B., Meng, J., Huang, F., Romero, P. R., Uversky, V. N., & Dunker, A. K. (2012) · Protein Science · doi:10.1002/pro.2207 · Cited by 193 · see citing works
Complementarity of Structure Ensembles in Protein-Protein Binding
Grünberg, R., Leckner, J., & Nilges, M. (2004) · Structure · doi:10.1016/j.str.2004.09.014 · Cited by 182 · see citing works
Marsh, J. A., & Forman-Kay, J. D. (2009) · Journal of Molecular Biology · doi:10.1016/j.jmb.2009.06.001 · Cited by 157 · see citing works
Electrostatics in Protein Binding and Function
Sinha, N., & Smith‐Gill, S. J. (2002) · Current Protein and Peptide Science · doi:10.2174/1389203023380431 · Cited by 151 · see citing works
Rao, J. N., Jao, C. C., Hegde, B. G., Langen, R., & Ulmer, T. S. (2010) · Journal of the American Chemical Society · doi:10.1021/ja100646t · Cited by 150 · see citing works
Mapping the Potential Energy Landscape of Intrinsically Disordered Proteins at Amino Acid Resolution
Ozenne, V., Schneider, R. C., Yao, M., Huang, J., Salmon, L., Zweckstetter, M., Jensen, M. R., & Blackledge, M. J. (2012) · Journal of the American Chemical Society · doi:10.1021/ja306905s · Cited by 129 · see citing works
Huang, J., & Grzesiek, S. (2009) · Journal of the American Chemical Society · doi:10.1021/ja907974m · Cited by 112 · see citing works
NMR characterization of residual structure in the denatured state of protein L
Qian, Y., Scalley-Kim, M. L., Alm, E. J., & Baker, D. A. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3816 · Cited by 110 · see citing works
Morin, B. M., Bourhis, J., Belle, V., Woudstra, M., Carrière, F., Guigliarelli, B., Fournel, A., & Longhi, S. (2006) · The Journal of Physical Chemistry B · doi:10.1021/jp063708u · Cited by 105 · see citing works
Schneider, R. C., Huang, J., Yao, M., Communie, G., Ozenne, V., Mollica, L., Salmon, L., Jensen, M. R., & Blackledge, M. J. (2011) · Molecular BioSystems · doi:10.1039/c1mb05291h · Cited by 105 · see citing works
The Distribution of Fatty Acids Reveals the Functional Structure of Human Serum Albumin
Junk, M. J. N., Spiess, H. W., & Hinderberger, D. (2010) · Angewandte Chemie International Edition · doi:10.1002/anie.201003495 · Cited by 74 · see citing works
Self-citationDrescher, M. (2011) · Topics in current chemistry · doi:10.1007/128_2011_235 · Cited by 70 · see citing works
Avbelj, F., & Fele, L. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1792 · Cited by 70 · see citing works
Platzer, G., Schedlbauer, A., Chemelli, A., Ozdowy, P., Coudevylle, N., Auer, R., Kontaxis, G., Hartl, M., Miles, A. J., Wallace, B. A., et al. (2011) · Biochemistry · doi:10.1021/bi200291e · Cited by 68 · see citing works
Self-citationToward an atomistic description of the urea-denatured state of proteins
Candotti, M., Esteban-Martín, S., Salvatella, X., & Orozco, M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1216589110 · Cited by 65 · see citing works
Huang, J., Gabel, F., Jensen, M. R., Grzesiek, S., & Blackledge, M. J. (2012) · Journal of the American Chemical Society · doi:10.1021/ja2118688 · Cited by 39 · see citing works
Length‐dependent compaction of intrinsically disordered proteins
Uversky, V. N., Santambrogio, C., Brocca, S., & Grandori, R. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.11.026 · Cited by 32 · see citing works
Coherent Microscopic Picture for Urea-Induced Denaturation of Proteins
Yang, Z., Xiu, P., Shi, B., Hua, L., & Zhou, R. (2012) · The Journal of Physical Chemistry B · doi:10.1021/jp304114h · Cited by 29 · see citing works
The Meandering of Disordered Proteins in Conformational Space
Konrat, R. (2010) · Structure · doi:10.1016/j.str.2010.03.003 · Cited by 14 · see citing works
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- Tompa P.; Fuxreiter M. (2008) Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions. Trends Biochem. Sci. 33, 2– 8. 18054235
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Bustamante‐Filho, I. C., Menegassi, S. R. O., Pereira, G. R., Salton, G. D., Munari, F. M., Schneider, M. R., Mattos, R. C., Barcellos, J. O. J., Laurino, J. P., Lima, E. O. C., et al. (2020) · Andrologia · doi:10.1111/and.13905 · Cited by 18 · see citing works
Hydrophobic Collapse of the Intrinsically Disordered Transcription Factor Myc Associated Factor X
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Weickert, S., Cattani, J., & Drescher, M. (2018) · Royal Society of Chemistry eBooks · doi:10.1039/9781788013888-00001 · Cited by 18 · see citing works
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Lenton, S., Seydel, T., Nylander, T., Holt, C., Haertlein, M., Teixeira, S. C. M., & Zaccaı̈, G. (2015) · Journal of The Royal Society Interface · doi:10.1098/rsif.2015.0506 · Cited by 18 · see citing works
Liu, J., Yuan, R., Shao, W., Wang, J., Silman, I., & Sussman, J. L. (2023) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.26496 · Cited by 18 · see citing works
Vassall, K. A., Jenkins, A. D., Bamm, V. V., & Harauz, G. (2015) · Journal of Molecular Biology · doi:10.1016/j.jmb.2015.03.011 · Cited by 17 · see citing works
Pramanik, S., Harini Devi, M., Chakrabarty, S., Paylar, B., Pradhan, A., Thaker, M., Ayyadhury, S., Manavalan, A., Olsson, P., Pramanik, G., et al. (2024) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2024.105834 · Cited by 18 · see citing works
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Martinho, M., Fournier, E., Breton, N. L., Mileo, E., & Belle, V. (2018) · Royal Society of Chemistry eBooks · doi:10.1039/9781788013888-00066 · Cited by 12 · see citing works
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Tavakol, M., & Vaughan, T. J. (2021) · Biophysical Journal · doi:10.1016/j.bpj.2021.12.023 · Cited by 10 · see citing works
Haeri, H. H., Tomaszewski, J., Phytides, B., Schimm, H., Möslein, G., Niedergethmann, M., Hinderberger, D., & Gelos, M. (2020) · ACS Pharmacology & Translational Science · doi:10.1021/acsptsci.0c00116 · Cited by 10 · see citing works
Self-citationLü, H., Ng, D. Y. W., Lieberwirth, I., Weidner, T., & Bonn, M. (2021) · Angewandte Chemie International Edition · doi:10.1002/anie.202105768 · Cited by 10 · see citing works
Kuzin, S. V., Stolba, D., Wu, X., Syryamina, V. N., Boulos, S., Jeschke, G., Nyström, L., & Yulikov, M. (2024) · The Journal of Physical Chemistry Letters · doi:10.1021/acs.jpclett.4c00825 · Cited by 9 · see citing works
Nelea, V., Chien, Y., Paquette, J., & McKee, M. D. (2014) · Crystal Growth & Design · doi:10.1021/cg4012394 · Cited by 9 · see citing works
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Takahashi, T., Ueno, H., Yamaide, F., Nakano, T., Shiko, Y., Kawasaki, Y., Mitsuishi, C., & Shimojo, N. (2023) · Nutrients · doi:10.3390/nu15071735 · Cited by 8 · see citing works
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Self-citationKurzbach, D., Canet, E., Flamm, A. G., Jhajharia, A., Weber, E. M. M., Konrat, R., & Bodenhausen, G. (2016) · Angewandte Chemie · doi:10.1002/ange.201608903 · Cited by 7 · see citing works
Self-citationTurhan, E., Pötzl, C., Brandis, D., Faglia, F., Zachrdla, M., & Kurzbach, D. (2025) · Chemistry - A European Journal · doi:10.1002/chem.202502067 · Cited by 6 · see citing works
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Stoppa, I., Provera, A., Sacchetti, S., Clemente, N., Pantham, D., Christaki, F., Vecchio, C., Sheferaw, A. N., Rolla, R., Dianzani, C., et al. (2025) · Cell Communication and Signaling · doi:10.1186/s12964-025-02559-4 · Cited by 5 · see citing works
Reddy, K. D., DeForte, S., & Uversky, V. N. (2014) · Intrinsically Disordered Proteins · doi:10.4161/idp.27833 · Cited by 5 · see citing works
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Self-citationSyryamina, V. N., Wu, X., Boulos, S., Nyström, L., & Yulikov, M. (2023) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2023.121167 · Cited by 5 · see citing works
Salahuddin, P. (2015) · Journal of Biochemistry and Molecular Biology Research · doi:10.17554/j.issn.2313-7177.2015.01.4 · Cited by 5 · see citing works
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Otis, J., Reichenwallner, J., Reichheld, S. E., Au, A., Yip, C. M., Ernst, O. P., & Sharpe, S. J. (2025) · Journal of the American Chemical Society · doi:10.1021/jacs.5c12305 · Cited by 4 · see citing works
Guo, S., Ravi, A., Mayfield, S. P., & Nikolov, Z. L. (2018) · Biotechnology Progress · doi:10.1002/btpr.2722 · Cited by 4 · see citing works
Korkola, N. C., & Stillman, M. J. (2024) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2024.141010 · Cited by 3 · see citing works
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Lyu, Y. F., Wen, X., Hu, J., Huang, Y., Qiao, Y., & Zhang, J. (2025) · Food Bioscience · doi:10.1016/j.fbio.2025.106155 · Cited by 3 · see citing works
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Steinman, L. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2221816120 · Cited by 3 · see citing works
Song, X., & Wang, W. (2025) · Communications in Computational Chemistry · doi:10.4208/cicc.2025.217.02 · Cited by 2 · see citing works
Confidence limits in pulse dipolar EPR spectroscopy: estimates for individual measurements
Syryamina, V. N., Матвеева, А. Г., & Bowman, M. K. (2024) · Physical Chemistry Chemical Physics · doi:10.1039/d3cp05797f · Cited by 2 · see citing works
Ceccolini, I., Kauffmann, C., Holzinger, J., Konrat, R., & Zawadzka‐Kazimierczuk, A. (2024) · Journal of Magnetic Resonance · doi:10.1016/j.jmr.2024.107661 · Cited by 2 · see citing works
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Mehravar, M., Ghaemimanesh, F., & Poursani, E. (2022) · Cancer Biomarkers · doi:10.3233/cbm-210135 · Cited by 1 · see citing works
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Spiess, H. W. (2013) · Advances in polymer science · doi:10.1007/12_2013_255 · Cited by 2 · see citing works
Hyperpolarized water via dissolution dynamic nuclear polarization: Applications in biomolecular NMR
Lee, Y., & Kim, J. (2024) · Applied Spectroscopy Reviews · doi:10.1080/05704928.2024.2324821 · Cited by 1 · see citing works
In search of shape in the unshaped: Constructing ensembles of intrinsically disordered proteins
Saha, D., Yang, W., & Zheng, W. (2026) · Biophysics Reviews · doi:10.1063/5.0307183 · Cited by 1 · see citing works
Asadollahi, K., Rajput, S., Jameson, G. N. L., Scott, D. J., & Gooley, P. R. (2023) · Journal of Molecular Biology · doi:10.1016/j.jmb.2023.168244 · Cited by 1 · see citing works
Bawage, S., Weeks, S. E., Shevde, L. A., & Samant, R. S. (2017) · Springer eBooks · doi:10.1007/978-3-319-67199-4_101771 · Cited by 1 · see citing works
The molecular mechanism of Hsp90-induced oligomerization of TauPreprint
Weickert, S., Wawrzyniuk, M., John, L., Rüdiger, S., & Drescher, M. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/614289
Lü, H., Ng, D. Y. W., Lieberwirth, I., Weidner, T., & Bonn, M. (2021) · Angewandte Chemie · doi:10.1002/ange.202105768
Η κλινική αξία της οστεοποντίνης στον καρκίνο του πνεύμονα
Καζάκου, Α. (2016) · doi:10.12681/eadd/39378
Bawage, S., Weeks, S. E., Shevade, L. A., & Samant, R. S. (2016) · Springer eBooks · doi:10.1007/978-1-4614-6438-9_101771-1
BRCA1 inhibits MYC:MAX heterodimerization by modulating the availability of transient MAX monomersPreprint
Kurzbach, D., Epasto, L. M., Pötzl, C., Peterlik, H., Khalil, M., Saint‐Pierre, C., Gasparutto, D., & Sicoli, G. (2023) · Research Square · doi:10.21203/rs.3.rs-3114406/v1
Self-citationDröden, J., & Drescher, M. (2023) · Royal Society of Chemistry eBooks · doi:10.1039/bk9781839165986-00217
Interactions among the three protein states
Kadeřávek, P., Kubíček, K., & Žı́dek, L. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-21809-5.00022-3
- Authors
- Kurzbach, D., Platzer, G., Schwarz, T. C., Henen, M. A., Konrat, R., & Hinderberger, D.
- Affiliations
- Max Planck Society (DE)
- Max Perutz Labs (AT)
- Mansoura University (EG)
- Corresponding author
- Konrat, Robert
- Hinderberger, Dariush
- ORCID
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2013-07-24
- Volume
- 52
- Issue
- 31
- Pages
- 5167-5175
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- PMC
- PMC3737600
- OpenAlex
- W1982145465
- Cited by
- 105
- References
- 48
- Citations by year
- 2026: 4 · 2025: 8 · 2024: 9 · 2023: 11 · 2022: 7 · 2021: 8 · 2020: 10 · 2019: 6 · 2018: 8 · 2017: 7 · 2016: 10 · 2015: 9 · 2014: 7 · 2013: 1
- FWCI
- 4.03
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Biochemistry (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Electron Spin Resonance Studies
- Health Sciences › Medicine › Rheumatology › Bone and Dental Protein Studies
- Keywords
- osteopontin, intrinsically disordered proteins, cooperative folding, cooperative unfolding, protein conformational ensembles, random coil, apo state, metastasis, electron spin resonance, nuclear magnetic resonance
- MeSH terms
- Animals, Kinetics, Protein Conformation, Quail, Protein Folding, Nuclear Magnetic Resonance, Biomolecular, Avian Proteins, Osteopontin, Protein Unfolding, Intrinsically Disordered Proteins
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