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Structure of the Human Autophagy Initiating Kinase ULK1 in Complex with Potent Inhibitors
Abstract
Autophagy is a conserved cellular process that involves the degradation of cellular components for energy maintenance and cytoplasmic quality control that has recently gained interest as a novel target for a variety of human diseases, including cancer. A prime candidate to determine the potential therapeutic benefit of targeting autophagy is the kinase ULK1, whose activation initiates autophagy. Here, we report the first structures of ULK1, in complex with multiple potent inhibitors. These structures show features unique to the enzyme and will provide a path for the rational design of selective compounds as cellular probes and potential therapeutics.
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ULK1 autophosphorylates and transphosphorylates its binding partners ATG13, RB1CC1, and ATG101.
“that ULK1 autophosphorylates and transphosphorylates its binding partners ATG13, RB1CC1, and ATG101 [644, 645, 692-700].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [696]
Plate assays for monitoring the activity of peroxisomal oxidases in yeast colonies are available.
“Plate assays for monitoring the activity of peroxisomal oxidases in yeast colonies are also available [690,696].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [696]
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Cites
AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1
Kim, J., Kundu, M., Viollet, B., & Guan, K.-L. (2011) · Nature Cell Biology · doi:10.1038/ncb2152 · Cited by 7,227
Autophagy fights disease through cellular self-digestion
Mizushima, N., Levine, B., Cuervo, A. M., & Klionsky, D. J. (2008) · Nature · doi:10.1038/nature06639 · Cited by 6,452
Induction of autophagy and inhibition of tumorigenesis by beclin 1
Liang, X. H., Jackson, S., Seaman, M., Brown, K., Kempkes, B., Hibshoosh, H., & Levine, B. (1999) · Nature · doi:10.1038/45257 · Cited by 3,347
Yue, Z., Jin, S., Yang, C., Levine, A. J., & Heintz, N. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2436255100 · Cited by 2,116
Mathew, R., Karantza-Wadsworth, V., & White, E. (2007) · Nature Reviews Cancer · doi:10.1038/nrc2254 · Cited by 1,798
A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells
Cadwell, K., Liu, J. Y., Brown, S. L., Miyoshi, H., Loh, J., Lennerz, J. K., Kishi, C., Kc, W., Carrero, J. A., Hunt, S., et al. (2008) · Nature · doi:10.1038/nature07416 · Cited by 1,542
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Research works printed but not linked: 21
- Mizushima, 2011, The role of Atg proteins in autophagosome formation, Annu. Rev. Cell Dev. Biol., 27, 107, 10.1146/annurev-cellbio-092910-154005 · DOI · Paper page
- Tsukada, 1993, Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae, FEBS Lett., 333, 169, 10.1016/0014-5793(93)80398-E · DOI
- Harding, 1995, Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway, J. Cell Biol., 131, 591, 10.1083/jcb.131.3.591 · DOI
- Thumm, 1994, Isolation of autophagocytosis mutants of Saccharomyces cerevisiae, FEBS Lett., 349, 275, 10.1016/0014-5793(94)00672-5 · DOI
- Chan, 2007, siRNA screening of the kinome identifies ULK1 as a multidomain modulator of autophagy, J. Biol. Chem., 282, 25464, 10.1074/jbc.M703663200 · DOI · Paper page
- Wong, 2013, The ULK1 complex: sensing nutrient signals for autophagy activation, Autophagy, 9, 124, 10.4161/auto.23323 · DOI
- Stjepanovic, 2014, Assembly and dynamics of the autophagy-initiating Atg1 complex, Proc. Natl. Acad. Sci. U. S. A., 111, 12793, 10.1073/pnas.1407214111 · DOI
- Egan, 2011, Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy, Science, 331, 456, 10.1126/science.1196371 · DOI · Paper page
- Ganley, 2009, ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy, J. Biol. Chem., 284, 12297, 10.1074/jbc.M900573200 · DOI · Paper page
- Spencer, 2009, Beclin 1 gene transfer activates autophagy and ameliorates the neurodegenerative pathology in alpha-synuclein models of Parkinson’s and Lewy body diseases, J. Neurosci., 29, 13578, 10.1523/JNEUROSCI.4390-09.2009 · DOI · Paper page
- Karantza-Wadsworth, 2007, Role of autophagy in breast cancer, Autophagy, 3, 610, 10.4161/auto.4867 · DOI
- Boya, 2005, Inhibition of macroautophagy triggers apoptosis, Mol. Cell. Biol., 25, 1025, 10.1128/MCB.25.3.1025-1040.2005 · DOI
- Fan, 2010, Akt and autophagy cooperate to promote survival of drug-resistant glioma, Sci. Signaling, 3, ra81, 10.1126/scisignal.2001017 · DOI
- Kanzawa, 2004, Role of autophagy in Temozolomide-induced cytotoxicity for malignant glioma cells, Cell Death Differ., 11, 448, 10.1038/sj.cdd.4401359 · DOI
- Paglin, 2001, A novel response of cancer cells to radiation involves autophagy and formation of acidic vesicles, Cancer Res., 61, 439
- Niesen, 2007, The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability, Nat. Protoc., 2, 2212, 10.1038/nprot.2007.321 · DOI
- Goldschmidt, 2007, Toward rational protein crystallization: A Web server for the design of crystallizable protein variants, Protein Sci., 16, 1569, 10.1110/ps.072914007 · DOI
- Fujioka, 2014, Structural basis of starvation-induced assembly of the autophagy initiation complex, Nat. Struct. Mol. Biol., 21, 513, 10.1038/nsmb.2822 · DOI
- Lin, 2012, GSK3-TIP60-ULK1 signaling pathway links growth factor deprivation to autophagy, Science, 336, 477, 10.1126/science.1217032 · DOI · Paper page
- Pike, 2008, Activation segment dimerization: a mechanism for kinase autophosphorylation of non-consensus sites, EMBO J., 27, 704, 10.1038/emboj.2008.8 · DOI
- Krissinel, 2007, Inference of macromolecular assemblies from crystalline state, J. Mol. Biol., 372, 774, 10.1016/j.jmb.2007.05.022 · DOI
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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,897
The mammalian ULK1 complex and autophagy initiation
Zachari, M., & Ganley, I. G. (2017) · Essays in Biochemistry · doi:10.1042/ebc20170021 · Cited by 789
Pasquier, B. (2016) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-015-2104-y · Cited by 329
Cell deaths: Involvement in the pathogenesis and intervention therapy of COVID-19
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Metadata
- Authors
- Lazarus, M. B., Novotny, C. J., & Shokat, K. M.
- Affiliations
- University of California, San Francisco , , , ,
- Venue
- ACS Chemical Biology
- Publisher
- American Chemical Society (ACS)
- Published
- 2014-12-31
- Volume
- 10
- Issue
- 1
- Pages
- 257-261
- ISSN
- 1554-8929
- 1554-8937
- PMC
- PMC4301081
- Cited by
- 154
- References
- 6
- Language
- en
- Funders
- Howard Hughes Medical Institute (NA)
- National Institute of Allergy and Infectious Diseases (R01 AI094098)
- Helen Hay Whitney Foundation (NA)
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