Prokaryotic Nucleotide Excision Repair: The UvrABC System

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Items 101–200 of 335

1. Recognition of Damaged DNA: Structure and Dynamic Markers
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4. Genetic Analysis of Repair and Damage Tolerance Mechanisms for DNA-Protein Cross-Links in Escherichia coli
   Amir M.H. Salem, Toshiaki Nakano, Minako Takuwa, Nagisa Matoba, Tomohiro Tsuboi, Hiroaki Terato, Kazuo Yamamoto, Masami Yamada, Takehiko Nohmi, Hiroshi Ide · 2009 · Journal of Bacteriology
5. Isolating Escherichia coli strains for recombinant protein production
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6. Conservation and Divergence in Nucleotide Excision Repair Lesion Recognition
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7. Microbial genotoxicity bioreporters based on sulA activation
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8. Dynamics of Lesion Processing by Bacterial Nucleotide Excision Repair Proteins
   Neil M. Kad, Bennett Van Houten · 2012 · Progress in molecular biology and translational science
9. Comparative Proteomics of Outer Membrane Vesicles from Polymyxin-Susceptible and Extremely Drug-Resistant Klebsiella pneumoniae
   Maytham H. Hussein, Raad Jasim, Hakan Gocol, Mark A. Baker, Varsha Jagannath Thombare, James Ziogas, Aayush Purohit, Gauri G. Rao, Jian Li, Tony Velkov · 2023 · mSphere
10. Controlled degradation by ClpXP protease tunes the levels of the excision repair protein UvrA to the extent of DNA damage
    Mihaela Pruteanu, Tania A. Baker · 2008 · Molecular Microbiology
11. Cyclic AMP Receptor Protein Acts as a Transcription Regulator in Response to Stresses in Deinococcus radiodurans
    Su Yang, Hong Xu, Jiali Wang, Chengzhi Liu, Huizhi Lu, Mengjia Liu, Ye Zhao, Bing Tian, Liangyan Wang, Yuejin Hua · 2016 · PLoS ONE
12. Toxicity and repair of DNA adducts produced by the natural product yatakemycin
    E.A. Mullins, Rongxin Shi, Brandt F. Eichman · 2017 · Nature Chemical Biology
13. A Peek Inside the Machines of Bacterial Nucleotide Excision Repair
    Thanyalak Kraithong, Silas Hartley, David Jeruzalmi, Danaya Pakotiprapha · 2021 · International Journal of Molecular Sciences
14. Characterization of a novel DNA glycosylase from S. sahachiroi involved in the reduction and repair of azinomycin B induced DNA damage
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15. Molecular biology of Hel308 helicase in archaea
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16. Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511
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18. Molecular response mechanism in Escherichia coli under hexabromocyclododecane stress
    Kunliang Yang, Qiao Zhong, Huaming Qin, Yan Long, Huase Ou, Jinshao Ye, Yanfen Qu · 2019 · The Science of The Total Environment
19. Transcription-coupled DNA repair underlies variation in persister awakening and the emergence of resistance
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20. Loss of Cellular Transformation Efficiency Induced by DNA Irradiation with Low-Energy (10 eV) Electrons
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21. Proteolysis in the SOS response and metal homeostasis in Escherichia coli
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22. Mycobacterium tuberculosis UvrB Is a Robust DNA-Stimulated ATPase That Also Possesses Structure-Specific ATP-Dependent DNA Helicase Activity
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23. DnaA and LexA Proteins Regulate Transcription of the uvrB Gene in Escherichia coli: The Role of DnaA in the Control of the SOS Regulon
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24. Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
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25. The competition between chemistry and biology in assembling iron–sulfur derivatives. Molecular structures and electrochemistry. Part V. { [ Fe 4 S 4 ] ( S Cys γ ) 4 } proteins
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26. NAD homeostasis in the bacterial response to DNA/RNA damage
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27. A novel single-stranded DNA-specific 3′–5′ exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways
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28. Effects of the bacterial transcription-repair coupling factor during transcription of DNA containing non-bulky lesions
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29. Enzymatic Activities and DNA Substrate Specificity of Mycobacterium tuberculosis DNA Helicase XPB
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30. Targeting Genome Integrity in Mycobacterium Tuberculosis: From Nucleotide Synthesis to DNA Replication and Repair
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31. Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer
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32. The competition between chemistry and biology in assembling iron-sulfur derivatives. Molecular structures and electrochemistry. Part IV. {[Fe3S4](SγCys)3} proteins
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33. A bacterial DNA repair pathway specific to a natural antibiotic
    Peter E. Burby, Lyle A. Simmons · 2018 · Molecular Microbiology
34. Quantitation of DNA Adducts of Aristolochic Acids in Repair-Deficient Cells: A Mechanistic Study of the DNA Repair Mechanism
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35. Conformation-Specific Recognition of Carcinogen−DNA Adduct in Escherichia coli Nucleotide Excision Repair
    Srinivasarao Meneni, Steven M. Shell, Yue Zou, Bongsup P. Cho · 2006 · Chemical Research in Toxicology
36. UvrD helicase: An old dog with a new trick
    Vitaly Epshtein · 2014 · BioEssays
37. Replisome activity slowdown after exposure to ultraviolet light in Escherichia coli
    Nicolas Soubry, Andrea Wang, Rodrigo Reyes‐Lamothe · 2019 · Proceedings of the National Academy of Sciences
38. Role of the insertion domain and the zinc-finger motif of Escherichia coli UvrA in damage recognition and ATP hydrolysis
    Koen Wagner, Geri F. Moolenaar, Nora Goosen · 2011 · DNA repair
39. The Nucleotide Excision Repair System of Borrelia burgdorferi Is the Sole Pathway Involved in Repair of DNA Damage by UV Light
    Pierre‐Olivier Hardy, George Chaconas · 2013 · Journal of Bacteriology
40. Crystal Structure of the DNA Repair Enzyme Ultraviolet Damage Endonuclease
    Keti Paspaleva, Ellen A. J. Thomassen, N.S. Pannu, Shigenori Iwai, Geri F. Moolenaar, Nora Goosen, Jan Pieter Abrahams · 2007 · Structure
41. NMR analysis of [methyl-13C]methionine UvrB from Bacillus caldotenax reveals UvrB–domain 4 heterodimer formation in solution
    Matthew J. DellaVecchia, W. Keither Merritt, Peng Ye, Thomas W. Kirby, Eugene F. DeRose, Geoffrey A. Mueller, Bennett Van Houten, Robert E. London · 2007 · Journal of Molecular Biology
42. Bacterial DNA repair genes and their eukaryotic homologues: 4. The role of nucleotide excision DNA repair (NER) system in mammalian cells.
    Leena Maddukuri, Dominika Dudzińska, Barbara Tudek · 2007 · Acta Biochimica Polonica
43. Generation of biologically contained, readily transformable, and genetically manageable mutants of the biotechnologically important Bacillus pumilus
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44. Modelling genetic stability in engineered cell populations
    Duncan Ingram, Guy-Bart V. Stan · 2023 · Nature Communications
45. Mechanistic and biological aspects of helicase action on damaged DNA
    Avvaru N. Suhasini, Robert M. Brosh · 2010 · Cell Cycle
46. Ongoing evolution of Pseudomonas aeruginosa PAO1 sublines complicates studies of DNA damage repair and tolerance
    Julia Sidorenko, Tatjana Jatsenko, Maia Kivisaar · 2017 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
47. Prokaryotic Nucleotide Excision Repair: The UvrABC System
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48. Mitsuaria chitinivorans sp. nov. a potential candidate for bioremediation: emended description of the genera Mitsuaria, Roseateles and Pelomonas
    Shivaji Sisinthy, Gundlapally S. N. Reddy · 2020 · Archives of Microbiology
49. Exploring Damage Recognition Models in Prokaryotic Nucleotide Excision Repair with a Benzo[a]pyrene-Derived Lesion in UvrB
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50. Bacterial DNA repair genes and their eukaryotic homologues: 2. Role of bacterial mutator gene homologues in human disease. Overview of nucleotide pool sanitization and mismatch repair systems.
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51. The food-borne pathogen Campylobacter jejuni depends on the AddAB DNA repair system to defend against bile in the intestinal environment
    Christopher R. Gourley, Nicholas M. Negretti, Michael E. Konkel · 2017 · Scientific Reports
52. Functions of base flipping in E. coli nucleotide excision repair
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53. Investigation of bacterial nucleotide excision repair using single-molecule techniques
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54. Molecular assessment of UVC radiation-induced DNA damage repair in the stromatolitic halophilic archaeon, Halococcus hamelinensis
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55. Crystal structure of the UvrB dimer: insights into the nature and functioning of the UvrAB damage engagement and UvrB–DNA complexes
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56. Low intensity infrared laser effects on Escherichia coli cultures and plasmid DNA
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57. A triazole linkage that mimics the DNA phosphodiester group in living systems
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58. The Literature of Heterocyclic Chemistry, Part X, 2005–2007
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59. Mycobacterium tuberculosis UvrB forms dimers in solution and interacts with UvrA in the absence of ligands
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60. The Molecular Toxicology of Mitomycin C
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61. DNA Helicases in NER, BER, and MMR
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62. Helicases that underpin replication of protein-bound DNA in Escherichia coli
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63. Quantitative proteomic reveals gallium maltolate induces an iron-limited stress response and reduced quorum-sensing in Pseudomonas aeruginosa
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64. Reductive inactivation of the hemiaminal pharmacophore for resistance against tetrahydroisoquinoline antibiotics
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65. Role of the two ATPase domains of Escherichia coli UvrA in binding non-bulky DNA lesions and interaction with UvrB
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66. Scanning the DNA for damage by the nucleotide excision repair machinery
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67. Contribution of increased mutagenesis to the evolution of pollutants-degrading indigenous bacteria
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68. Enthalpy−Entropy Contribution to Carcinogen-Induced DNA Conformational Heterogeneity
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69. Performance and transcriptome analysis of Salmonella enterica serovar Enteritidis PT 30 under persistent desiccation stress: Cultured by lawn and broth methods
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70. In vitro reconstitution of an efficient nucleotide excision repair system using mesophilic enzymes from Deinococcus radiodurans
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71. Platinated DNA Affects Zinc Finger Conformation. Interaction of a Platinated Single-Stranded Oligonucleotide and the C-Terminal Zinc Finger of Nucleocapsid Protein HIVNCp7
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72. A combined structural and biochemical approach reveals translocation and stalling of UvrB on the DNA lesion as a mechanism of damage verification in bacterial nucleotide excision repair
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73. Transcription elongation
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74. Analysis of DNA binding by human factor xeroderma pigmentosum complementation group A (XPA) provides insight into its interactions with nucleotide excision repair substrates
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75. The significance of the <scp>D</scp> ewar valence photoisomer as a <scp>UV</scp> radiation‐induced <scp>DNA</scp> photoproduct in marine microbial communities
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76. Genome Sequence of a Thermoacidophilic Methanotroph Belonging to the Verrucomicrobiota Phylum from Geothermal Hot Springs in Yellowstone National Park: A Metagenomic Assembly and Reconstruction
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77. Metabolic versatility of soil microbial communities below the rocks of the hyperarid Dalangtan Playa
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78. Transcriptional coupling (Mfd) and DNA damage scanning (DisA) coordinate excision repair events for efficient Bacillus subtilis spore outgrowth
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79. Transcription-Coupled Repair and Complex Biology
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80. Mechanism of DNA Lesion Homing and Recognition by the Uvr Nucleotide Excision Repair System
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81. UvrC Coordinates an O 2 -Sensitive [4Fe4S] Cofactor
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82. Conservation of the Nucleotide Excision Repair Pathway: Characterization of Hydra Xeroderma Pigmentosum Group F Homolog
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83. Understanding the coupling between DNA damage detection and UvrA's ATPase using bulk and single molecule kinetics
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84. DNA Replication and Repair in Halophiles
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85. Efficient processing of TFO-directed psoralen DNA interstrand crosslinks by the UvrABC nuclease
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86. Base excision repair system targeting DNA adducts of trioxacarcin/LL-D49194 antibiotics for self-resistance
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87. Structural and functional insights into the activation of the dual incision activity of UvrC, a key player in bacterial NER
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88. Structural and Thermodynamic Insight into Escherichia coli UvrABC-Mediated Incision of Cluster Diacetylaminofluorene Adducts on the NarI Sequence
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89. Interplay of DNA repair with transcription: from structures to mechanisms
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90. Emerging importance of mismatch repair components including UvrD helicase and their cross-talk with the development of drug resistance in malaria parasite
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91. SnapShot: Nucleotide Excision Repair
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92. Overexpression of Bm65 correlates with reduced susceptibility to inactivation by UV light
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93. Small‐angle X‐ray scattering reveals architecture and A2B2 stoichiometry of the UvrA–UvrB DNA damage sensor
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94. Regulation of nucleotide excision repair through ubiquitination
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95. T rypanosoma brucei harbours a divergent XPB helicase paralogue that is specialized in nucleotide excision repair and conserved among kinetoplastid organisms
    Nitika Badjatia, Tu N. Nguyen, Ju Huck Lee, Arthur Günzl · 2013 · Molecular Microbiology
96. Dissociation Dynamics of XPC-RAD23B from Damaged DNA Is a Determining Factor of NER Efficiency
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97. Synthesis of Cross-Linked DNA Containing Oxidized Abasic Site Analogues
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98. Stochastic Processes and Component Plasticity Governing DNA Mismatch Repair
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99. Simulating the Temporal Modulation of Inducible DNA Damage Response in Escherichia coli
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100. Excision of a Lyase-Resistant Oxidized Abasic Lesion from DNA
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