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Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation
Abstract
Modern videogames place increasing demands on the computational and graphical hardware, leading to novel architectures that have great potential in the context of high performance computing and molecular simulation. We demonstrate that Graphical Processing Units (GPUs) can be used very efficiently to calculate two-electron repulsion integrals over Gaussian basis functions [Formula: see text] the first step in most quantum chemistry calculations. A benchmark test performed for the evaluation of approximately 10(6) (ss|ss) integrals over contracted s-orbitals showed that a naïve algorithm implemented on the GPU achieves up to 130-fold speedup over a traditional CPU implementation on an AMD Opteron. Subsequent calculations of the Coulomb operator for a 256-atom DNA strand show that the GPU advantage is maintained for basis sets including higher angular momentum functions.
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Cites
Self-consistent molecular orbital methods. XX. A basis set for correlated wave functions
Krishnan, R., Binkley, J. S., Seeger, R., & Pople, J. A. (1980) · The Journal of Chemical Physics · doi:10.1063/1.438955 · Cited by 17,772
Cited by
Ufimtsev, I. S., & Martinez, T. J. (2009) · Journal of Chemical Theory and Computation · doi:10.1021/ct9003004 · Cited by 916
Self-citationThe transformational role of GPU computing and deep learning in drug discovery
Pandey, M., Fernandez, M., Gentile, F., Isayev, O., Tropsha, A., Stern, A. C., & Cherkasov, A. (2022) · Nature Machine Intelligence · doi:10.1038/s42256-022-00463-x · Cited by 255
Janet, J. P., Chan, L., & Kulik, H. J. (2018) · The Journal of Physical Chemistry Letters · doi:10.1021/acs.jpclett.8b00170 · Cited by 200
Janet, J. P., Liu, F., Nandy, A., Duan, C., Yang, T., Lin, S., & Kulik, H. J. (2019) · Inorganic Chemistry · doi:10.1021/acs.inorgchem.9b00109 · Cited by 114
Towards the simulation of large scale protein–ligand interactions on NISQ-era quantum computers
Malone, F. D., Parrish, R. M., Welden, A. R., Fox, T., Degroote, M., Kyoseva, E., Moll, N., Santagati, R., & Streif, M. (2022) · Chemical Science · doi:10.1039/d1sc05691c · Cited by 48
Metadata
- Authors
- Ufimtsev, I. S., & Martínez, T. J.
- Venue
- Journal of Chemical Theory and Computation
- Publisher
- American Chemical Society (ACS)
- Published
- 2008-01-25
- Volume
- 4
- Issue
- 2
- Pages
- 222-231
- ISSN
- 1549-9618 (ISSN-L)
- 1549-9626
- OpenAlex
- W2155417823
- Cited by
- 606
- References
- 1
- FWCI
- 57.27
- Type
- journal article
- Language
- en
- Open access
- closed
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- Ufimtsev, I. S., & Martínez, T. J. (2008). Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation. Journal of Chemical Theory and Computation. https://doi.org/10.1021/ct700268q
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