Evaluation of B3LYP, X3LYP, and M06-class density functionals for predicting the binding energies of neutral, protonated, and deprotonated water clusters
Abstract
In this paper we assess the accuracy of the B3LYP, X3LYP, and newly developed M06-L, M06-2X, and M06 functionals to predict the binding energies of neutral and charged water clusters including (H2O)n, n = 2-8, 20), H3O(+)(H2O)n, n = 1-6, and OH(-)(H2O)n, n = 1-6. We also compare the predicted energies of two ion hydration and neutralization reactions on the basis of the calculated binding energies. In all cases, we use as benchmarks calculated binding energies of water clusters extrapolated to the complete basis set limit of the second-order Møller-Plesset perturbation theory with the effects of higher order correlation estimated at the coupled-cluster theory with single, double, and perturbative triple excitations in the aug-cc-pVDZ basis set. We rank the accuracy of the functionals on the basis of the mean unsigned error (MUE) between calculated benchmark and density functional theory energies. The corresponding MUE (kcal/mol) for each functional is listed in parentheses. We find that M06-L (0.73) and M06 (0.84) give the most accurate binding energies using very extended basis sets such as aug-cc-pV5Z. For more affordable basis sets, the best methods for predicting the binding energies of water clusters are M06-L/aug-cc-pVTZ (1.24), B3LYP/6-311++G(2d,2p) (1.29), and M06/aug-cc-PVTZ (1.33). M06-L/aug-cc-pVTZ also gives more accurate energies for the neutralization reactions (1.38), whereas B3LYP/6-311++G(2d,2p) gives more accurate energies for the ion hydration reactions (1.69).
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The largest two basis sets, 6-311++G(2d,2p) and aug-cc-pVTZ, appear to be near reasonable basis set convergence thresholds for the chosen density functionals.
“The largest two basis sets, 6-311++G(2d,2p) and aug-cc-pVTZ, appear to be near reasonable basis set convergence thresholds for the chosen density functionals (e.g., Molnar et al., 2009; Bryantsev et al., 2009; Suârez et al., 2011).”
From Theoretical constraints on the effects of added cations on clumped, oxygen, and carbon isotope signatures of dissolved inorganic carbon species and minerals (2020) · cites this paper as Bryantsev et al., 2009
The two largest basis sets, Dunning aug-cc-pVTZ and Pople 6-311++G(2d,2p), appear to be near reasonable basis set convergence thresholds for the chosen density functionals.
“The two largest basis sets, Dunning aug-cc-pVTZ and Pople 6311++G(2d,2p), appear to be near reasonable basis set convergence thresholds for the chosen density functionals (e.g., Molnar et al., 2009; Bryantsev et al., 2009; Suârez et al., 2011).”
From Theoretical constraints on the effects of added cations on clumped, oxygen, and carbon isotope signatures of dissolved inorganic carbon species and minerals (2020) · cites this paper as Bryantsev et al., 2009
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Lee, C., Yang, W., & Parr, R. G. (1988) · Physical Review B · doi:10.1103/physrevb.37.785 · Cited by 100,874 · see citing works
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Mardirossian, N., & Head-Gordon, M. (2017) · Molecular Physics · doi:10.1080/00268976.2017.1333644 · Cited by 2,307 · see citing works
Christensen, A. S., Kubař, T., Cui, Q., & Elstner, M. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00584 · Cited by 446 · see citing works
Hill, P. S., Tripati, A. K., & Schauble, E. A. (2014) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2013.06.018 · Cited by 155 · see citing works
A reactive neural network framework for water-loaded acidic zeolites
Erlebach, A., Šípka, M., Saha, I., Nachtigall, P., Heard, C. J., & Grajciar, L. (2024) · Nature Communications · doi:10.1038/s41467-024-48609-2 · Cited by 47 · see citing works
“org) and four isomers of (H2O)20.[67] All clusters were first optimized (constant volume conditions) with a unit cell ensuring a distance between equivalent periodic images of at least 1 nm.”
MethodHill, P. S., Schauble, E. A., & Tripati, A. (2020) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2019.10.016 · Cited by 32 · see citing works
- Authors
- Bryantsev, V. S., Diallo, M. S., van Duin, A. C. T., & Goddard, W. A.
- Affiliations
- California Institute of Technology (US)
- Materials and Process Simulation Center, Beckman Institute, MC 139-74, California Institute of Technology, Pasadena, California 91125, and Department of Mechanical and Nuclear Engineering, The Pennsylvania State University, University Park, Pennsylvania 16801
- Corresponding author
- Bryantsev, Vyacheslav S.
- Goddard, William A.
- Venue
- Journal of Chemical Theory and Computation
- Publisher
- American Chemical Society (ACS)
- Published
- 2009-03-12
- Volume
- 5
- Issue
- 4
- Pages
- 1016-1026
- ISSN
- 1549-9618 (ISSN-L)
- 1549-9626
- OpenAlex
- W2158393027
- Cited by
- 403
- References
- 1
- Citations by year
- 2026: 27 · 2025: 23 · 2024: 26 · 2023: 24 · 2022: 20 · 2021: 20 · 2020: 21 · 2019: 23 · 2018: 31 · 2017: 29 · 2016: 24 · 2015: 17 · 2014: 22 · 2013: 19 · 2012: 31
- FWCI
- 14.30
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Chemical Theory and Computation (publishedVersion)
- PubMed (publishedVersion)
- CaltechAUTHORS (California Institute of Technology) (submittedVersion)
- Topics
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Advanced Chemical Physics Studies
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Spectroscopy and Quantum Chemical Studies
- Physical Sciences › Chemistry › Physical and Theoretical Chemistry › Advanced Physical and Chemical Molecular Interactions
- Keywords
- water clusters, binding energy, M06 functional, M06-L, B3LYP, density functional accuracy, protonated water clusters, ion hydration, neutralization reaction, basis set extrapolation
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