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Crystallographic and FTIR Spectroscopic Evidence of Changes in Fe Coordination Upon Reduction of the Active Site of the Fe-Only Hydrogenase from Desulfovibriodesulfuricans

Nicolet, Yvain, de Lacey, Antonio L., Vernède, Xavier, Fernandez, Victor M., Hatchikian, E. Claude, Fontecilla-Camps, Juan C.·2001·Journal of the American Chemical Society

Abstract

Fe-only hydrogenases, as well as their NiFe counterparts, display unusual intrinsic high-frequency IR bands that have been assigned to CO and CN(-) ligation to iron in their active sites. FTIR experiments performed on the Fe-only hydrogenase from Desulfovibrio desulfuricans indicate that upon reduction of the active oxidized form, there is a major shift of one of these bands that is provoked, most likely, by the change of a CO ligand from a bridging position to a terminal one. Indeed, the crystal structure of the reduced active site of this enzyme shows that the previously bridging CO is now terminally bound to the iron ion that most likely corresponds to the primary hydrogen binding site (Fe2). The CO binding change may result from changes in the coordination sphere of Fe2 or its reduction. Superposition of this reduced active site with the equivalent region of a NiFe hydrogenase shows a remarkable coincidence between the coordination of Fe2 and that of the Fe ion in the NiFe cluster. Both stereochemical and mechanistic considerations suggest that the small organic molecule found at the Fe-only hydrogenase active site and previously modeled as 1,3-propanedithiolate may, in fact, be di-(thiomethyl)-amine.

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Research works printed but not linked: 54

  1. Albracht S. P., 1994, J. Biochim. Biophys. Acta, 1188, 204
  2. Adams M. W. W., 1990, Biochim. Biophys. Acta, 1020, 145
  3. Adams M. W. W., 1981, Biochim. Biophys. Acta, 594, 176
  4. Krasna A. I., 1954, J. Am. Chem. Soc., 76, 3020, 10.1021/ja01640a045 · DOI
  5. van der Zwaan J. W., 1985, FEBS Lett., 179, 277, 10.1016/0014-5793(85)80533-0 · doi:10.1016/0014-5793(85)80533-0
  6. Fauque G., 1988, FEMS Microbiol. Rev., 54, 344, 10.1111/j.1574-6968.1988.tb02748.x · doi:10.1111/j.1574-6968.1988.tb02748.x · Paper page
  7. Lutz S., 1991, Mol. Microbiol., 5, 135, 10.1111/j.1365-2958.1991.tb01833.x · DOI · Paper page
  8. Przybyla A. E., 1992, FEMS Microbiol. Rev., 88, 135, 10.1111/j.1574-6968.1992.tb04960.x · doi:10.1111/j.1574-6968.1992.tb04960.x · Paper page
  9. Wu L. F., 1993, FEMS Microbiol. Rev., 104, 269
  10. Hahn D., 1994, Process Biochem., 29, 641, 10.1016/0032-9592(94)80040-5 · DOI
  11. Elsen S., 1997, J. Bacteriol., 179, 971, 10.1128/jb.179.3.968-971.1997 · doi:10.1128/jb.179.3.968-971.1997
  12. (h) Ruiz-Argueso, T.; Imperial, J.; Palacios, J. M. InProkaryotic Nitrogen Fixation:A Model for the Analysis of aBiologicalProcess; E. W. Triplett, Ed.; Horizon Scientific Press: Wymondhan, U. K., 2000; pp 489−507.
  13. Cammack R., 1988, Bioinorganic Chemistry of Nickel
  14. Moura J. J. G., 1988, Bioinorganic Chemistry of Nickel
  15. Bastian N. R., 1988, Bioinorganic Chemistry of Nickel
  16. Bayinka C., 1993, J. Am. Chem. Soc., 115, 3585
  17. Bagley K. A., 1995, Biochemistry, 34, 5535, 10.1021/bi00016a026 · DOI
  18. Gu Z., 1996, J. Am. Chem. Soc., 118, 11165
  19. de Lacey A. L., 1997, J. Am. Chem. Soc., 119, 7189, 10.1021/ja963802w · DOI · Paper page
  20. Geβner, 1999, JBIC, 4, 389
  21. Volbeda A., 1995, Nature, 373, 587, 10.1038/373580a0 · DOI · Paper page
  22. Volbeda A., 1996, J. Am. Chem. Soc., 118, 12996, 10.1021/ja962270g · DOI · Paper page
  23. Higuchi Y., 1997, Structure, 5, 1680, 10.1016/S0969-2126(97)00313-4 · DOI · Paper page
  24. Garcin E., 1999, Structure, 7, 566, 10.1016/S0969-2126(99)80072-0 · DOI · Paper page
  25. Higuchi Y., 1999, Structure, 7, 556, 10.1016/S0969-2126(99)80071-9 · DOI · Paper page
  26. Pavlov M., 1998, J. Am. Chem. Soc., 120, 555, 10.1021/ja971681+ · doi:10.1021/ja971681+
  27. Amara P., 1999, J. Am. Chem. Soc., 121, 4477, 10.1021/ja983971b · DOI
  28. De Gioia L., 1999, Inorg. Chem., 38, 2662, 10.1021/ic9811446 · DOI
  29. Niu S., 1999, J. Am. Chem. Soc., 121, 4007
  30. Pavlov M., 1999, J. Quantum. Chem., 73, 207, 10.1002/(SICI)1097-461X(1999)73:2<197::AID-QUA13>3.0.CO;2-R · doi:10.1002/(sici)1097-461x(1999)73:2<197::aid-qua13>3.0.co;2-r
  31. Dole F., 1997, Biochemistry, 36, 7854, 10.1021/bi963171i · DOI
  32. Huyett J. E., 1997, J. Am. Chem. Soc., 119, 9292, 10.1021/ja9700919 · DOI
  33. Hagen W. R., 1986, FEBS Lett., 203, 63, 10.1016/0014-5793(86)81436-3 · doi:10.1016/0014-5793(86)81436-3
  34. Adams M. W. W., 1989, Proc. Natl. Acad. Sci., 86, 4936
  35. Hatchikian E. C., 1992, Eur. J. Biochem., 209, 365, 10.1111/j.1432-1033.1992.tb17297.x · DOI
  36. Pierik A. J., 1992, Eur. J. Biochem., 209, 72, 10.1111/j.1432-1033.1992.tb17261.x · doi:10.1111/j.1432-1033.1992.tb17261.x
  37. Popescu C. V., 1999, J. Am. Chem. Soc., 121, 7877, 10.1021/ja991243y · DOI
  38. Pierik A. J., 1998, Eur. J. Biochem., 258, 578, 10.1046/j.1432-1327.1998.2580572.x · DOI · Paper page
  39. Patil D. S., 1988, J. Biol. Chem., 263, 18738, 10.1016/S0021-9258(18)37344-7 · doi:10.1016/s0021-9258(18)37344-7
  40. Nicolet Y., 1999, Structure, 7, 23, 10.1016/S0969-2126(99)80005-7 · DOI · Paper page
  41. Peters J. W., 1998, Science, 282, 1858, 10.1126/science.282.5395.1858 · DOI · Paper page
  42. Nicolet Y., 2000, Trends Biochem. Sci., 25, 143, 10.1016/S0968-0004(99)01536-4 · DOI · Paper page
  43. Vernède X., 1999, J. Appl. Crystallogr., 32, 509, 10.1107/S0021889899002678 · doi:10.1107/s0021889899002678
  44. Leslie A. G., 1991, Crystallographic Computing, 61
  45. Navaza J., 1994, Acta Crystallogr., 50, 163, 10.1107/S0108767393007597 · DOI · Paper page
  46. Brünger A. T., 1992, Nature, 355, 474, 10.1038/355472a0 · DOI · Paper page
  47. Brünger A. T., 1998, Acta Crystallogr., 54, 921, 10.1107/S0108768198007381 · doi:10.1107/s0108768198007381
  48. Collaborative Computational Project Number 4., 1994, Acta Crystallogr., 50, 763
  49. Moss D., 1990, Eur. J. Biochem., 187, 572, 10.1111/j.1432-1033.1990.tb15338.x · DOI · Paper page
  50. Lemon B. J., 1999, Biochemistry, 38, 12973, 10.1021/bi9913193 · DOI · Paper page
  51. Nakamoto, K.Infrared andRamanSpectra of Inorganic and CoordinationCompounds, Part B, 5th ed. John Wiley & Sons: New York, 1997; pp 126−127.
  52. Cotton, F. A.; Wilkinson, G.Advanced Inorganic Chemistry, 5th ed.; John Wiley & Sons: New York, 1997; pp 1030−1031.
  53. Thomann H., 1991, J. Am. Chem. Soc., 113, 7046, 10.1021/ja00018a058 · doi:10.1021/ja00018a058
  54. Van Dam P. J., 1997, Eur. J. Biochem., 248, 361, 10.1111/j.1432-1033.1997.00355.x · doi:10.1111/j.1432-1033.1997.00355.x

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Metadata

Authors
Nicolet, Y., de Lacey, A. L., Vernède, X., Fernandez, V. M., Hatchikian, E. C., & Fontecilla-Camps, J. C.
Venue
Journal of the American Chemical Society
Published
2001-02-01
Volume
123
Issue
8
Pages
1596-1601
ISSN
  • 0002-7863 (ISSN-L)
  • 1520-5126
OpenAlex
W2062220773
Cited by
786
References
1
FWCI
26.85
Type
journal article
Language
en
Open access
closed

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CoChat. (2026). Citation check: Crystallographic and FTIR Spectroscopic Evidence of Changes in Fe Coordination Upon Reduction of the Active Site of the Fe-Only Hydrogenase from Desulfovibriodesulfuricans. https://app.cochat.ai/papers/10.1021/ja0020963
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Nicolet, Y., de Lacey, A. L., Vernède, X., Fernandez, V. M., Hatchikian, E. C., & Fontecilla-Camps, J. C. (2001). Crystallographic and FTIR Spectroscopic Evidence of Changes in Fe Coordination Upon Reduction of the Active Site of the Fe-Only Hydrogenase from Desulfovibriodesulfuricans. Journal of the American Chemical Society. https://doi.org/10.1021/ja0020963

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