Probing the Mycobacterial Trehalome with Bioorthogonal Chemistry
Open accessAbstract
Mycobacteria, including the pathogen Mycobacterium tuberculosis, use the non-mammalian disaccharide trehalose as a precursor for essential cell-wall glycolipids and other metabolites. Here we describe a strategy for exploiting trehalose metabolic pathways to label glycolipids in mycobacteria with azide-modified trehalose (TreAz) analogues. Subsequent bioorthogonal ligation with alkyne-functionalized probes enabled detection and visualization of cell-surface glycolipids. Characterization of the metabolic fates of four TreAz analogues revealed unique labeling routes that can be harnessed for pathway-targeted investigation of the mycobacterial trehalome.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Bioorthogonal metabolic labeling allows the biosynthesis of trehalose-containing molecules, peptidoglycans, and arabinan to be visualized in situ in both M. smegmatis and M. tuberculosis.
“Nevertheless, there are emerging efforts to apply modern (click chemistry) approaches of bioorthogonal metabolic labeling in both M. smegmatis and M. tuberculosis, allowing the biosynthesis of trehalose-containing molecules, peptidoglycans, and arabinan to be visualized in situ (116, 163–165).”
From Mycobacterium smegmatis: The Vanguard of Mycobacterial Research (2023) · cites this paper as [163]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Tornøe, C. W., Christensen, C., & Meldal, M. (2002) · The Journal of Organic Chemistry · doi:10.1021/jo011148j · Cited by 8,696 · see citing works
Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality
Sletten, E. M., & Bertozzi, C. R. (2009) · Angewandte Chemie International Edition · doi:10.1002/anie.200900942 · Cited by 3,165 · see citing works
Self-citationIn Vivo Imaging of Membrane-Associated Glycans in Developing Zebrafish
Laughlin, S. T., Baskin, J. M., Amacher, S. L., & Bertozzi, C. R. (2008) · Science · doi:10.1126/science.1155106 · Cited by 1,031 · see citing works
Self-citationDirect recognition of the mycobacterial glycolipid, trehalose dimycolate, by C-type lectin Mincle
Ishikawa, E., Ishikawa, T., Morita, Y. S., Toyonaga, K., Yamada, H., Takeuchi, O., Kinoshita, T., Akira, S., Yoshikai, Y., & Yamasaki, S. (2009) · The Journal of Experimental Medicine · doi:10.1084/jem.20091750 · Cited by 794 · see citing works
Role of the Major Antigen of <i>Mycobacterium tuberculosis</i> in Cell Wall Biogenesis
Belisle, J. T., Vissa, V. D., Sievert, T., Takayama, K., Brennan, P. J., & Besra, G. S. (1997) · Science · doi:10.1126/science.276.5317.1420 · Cited by 734 · see citing works
Global epidemiology of tuberculosis
Dye, C. (2006) · The Lancet · doi:10.1016/s0140-6736(06)68384-0 · Cited by 717 · see citing works
Rapid Cu-free click chemistry with readily synthesized biarylazacyclooctynones
Jewett, J. C., Sletten, E. M., & Bertozzi, C. R. (2010) · Journal of the American Chemical Society · doi:10.1021/ja100014q · Cited by 697 · see citing works
Self-citationHoffmann, C., Leis, A., Niederweis, M., Plitzko, J. M., & Engelhardt, H. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0709530105 · Cited by 596 · see citing works
Tahlan, K., Wilson, R., Kastrinsky, D. B., Arora, K., Nair, V., Fischer, E. R., Barnes, S. W., Walker, J. R., Alland, D., Barry, C. E., et al. (2012) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.05708-11 · Cited by 501 · see citing works
Inhibition of mycolic acid transport across the Mycobacterium tuberculosis plasma membrane
Grzegorzewicz, A. E., Pham, H., Gundi, V. A. K. B., Scherman, M. S., North, E. J., Hess, T., Jones, V., Gruppo, V., Born, S. E. M., Korduláková, J., et al. (2012) · Nature Chemical Biology · doi:10.1038/nchembio.794 · Cited by 442 · see citing works
Bacterial Growth and Cell Division: a Mycobacterial Perspective
Hett, E. C., & Rubin, E. J. (2008) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00028-07 · Cited by 408 · see citing works
Sani, M., Houben, E. N. G., Geurtsen, J., Pierson, J., de Punder, K., van Zon, M., Wever, B., Piersma, S. R., Jiménez, C. R., Daffé, M., et al. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1000794 · Cited by 306 · see citing works
Three pathways for trehalose biosynthesis in mycobacteria
Smet, K. A. L. D., Weston, A., Brown, I. N., Young, D. B., & Robertson, B. D. (2000) · Microbiology · doi:10.1099/00221287-146-1-199 · Cited by 265 · see citing works
Indrigo, J., Hunter, R. L., & Actor, J. K. (2003) · Microbiology · doi:10.1099/mic.0.26226-0 · Cited by 245 · see citing works
Mycobacterial outer membranes: in search of proteins
Niederweis, M., Danilchanka, O., Huff, J., Hoffmann, C., & Engelhardt, H. (2010) · Trends in Microbiology · doi:10.1016/j.tim.2009.12.005 · Cited by 244 · see citing works
Uptake of unnatural trehalose analogs as a reporter for Mycobacterium tuberculosis
Backus, K. M., Boshoff, H. I., Barry, C. S., Boutureira, O., Patel, M. K., D'Hooge, F., Lee, S. S., Via, L. E., Tahlan, K., Barry, C. E., et al. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.539 · Cited by 237 · see citing works
Kalscheuer, R., Weinrick, B. C., Usha, V., Besra, G. S., & Jacobs, W. R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1014642108 · Cited by 207 · see citing works
Self-citationSelf-poisoning of Mycobacterium tuberculosis by targeting GlgE in an α-glucan pathway
Kalscheuer, R., Syson, K., Usha, V., Weinrick, B. C., Biermann, K., Liu, Z., Sacchettini, J. C., Besra, G. S., Bornemann, S., & Jacobs, W. R. (2010) · Nature Chemical Biology · doi:10.1038/nchembio.340 · Cited by 159 · see citing works
Self-citationRyll, R., Kumazawa, Y., & Yano, I. (2001) · Microbiology and Immunology · doi:10.1111/j.1348-0421.2001.tb01319.x · Cited by 156 · see citing works
Sambou, T., Dinadayala, P., Stadthagen, G., Barilone, N., Bordat, Y., Constant, P., Levillain, F., Neyrolles, O., Gicquel, B., Lemassu, A., et al. (2008) · Molecular Microbiology · doi:10.1111/j.1365-2958.2008.06445.x · Cited by 145 · see citing works
The OtsAB Pathway Is Essential for Trehalose Biosynthesis in Mycobacterium tuberculosis
Murphy, H. N., Stewart, G. R., Mischenko, V. V., Apt, A. S., Harris, R., McAlister, M. S. B., Driscoll, P. C., Young, D. B., & Robertson, B. D. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m414232200 · Cited by 141 · see citing works
The Cell-Wall Core of Mycobacterium tuberculosis in the Context of Drug Discovery.
Brennan, P. J., & Crick, D. C. (2007) · Current Topics in Medicinal Chemistry · doi:10.2174/156802607780059763 · Cited by 137 · see citing works
Trehalose Is Required for Growth of Mycobacterium smegmatis
Woodruff, P. J., Carlson, B. L., Siridechadilok, B., Pratt, M. R., Senaratne, R. H., Mougous, J. D., Riley, L. W., Williams, S. J., & Bertozzi, C. R. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313103200 · Cited by 110 · see citing works
Self-citationSathyamoorthy, N., & Takayama, K. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)76442-4 · Cited by 70 · see citing works
Rostovtsev, V. V., Green, L. G., Fokin, V. V., & Sharpless, K. B. (2002) · Angewandte Chemie International Edition · doi:10.1002/1521-3773(20020715)41:14
Flagged first, then by citations
Cited by
Sorted by citations
MmpL3 is the flippase for mycolic acids in mycobacteria
Xu, Z., Meshcheryakov, V. A., Poce, G., & Chng, S.-S. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1700062114 · Cited by 201 · see citing works
Mycobacterium smegmatis: The Vanguard of Mycobacterial Research
Sparks, I. L., Derbyshire, K. M., Jacobs, W. R., & Morita, Y. S. (2023) · Journal of Bacteriology · doi:10.1128/jb.00337-22 · Cited by 149 · see citing works
Peptidoglycan precursor synthesis along the sidewall of pole-growing mycobacteria
García-Heredia, A., Pohane, A. A., Melzer, E. S., Carr, C. R., Fiolek, T. J., Rundell, S. R., Lim, H. C., Wagner, J. C., Morita, Y. S., Swarts, B. M., et al. (2018) · eLife · doi:10.7554/elife.37243 · Cited by 115 · see citing works
Self-citationMelzer, E. S., Sein, C. E., Chambers, J. J., & Siegrist, M. S. (2018) · Cytoskeleton · doi:10.1002/cm.21490 · Cited by 54 · see citing works
Self-citationTransport of outer membrane lipids in mycobacteria
Touchette, M. H., & Seeliger, J. C. (2017) · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids · doi:10.1016/j.bbalip.2017.01.005 · Cited by 33 · see citing works
- Authors
- Swarts, B. M., Holsclaw, C. M., Jewett, J. C., Alber, M., Fox, D. M., Siegrist, M. S., Leary, J. A., Kalscheuer, R., & Bertozzi, C. R.
- Affiliations
- University of California, Berkeley (US)
- Howard Hughes Medical Institute (US)
- Heinrich Heine University Düsseldorf (DE)
- Corresponding author
- Bertozzi, Carolyn R.
- ORCID
- Venue
- Journal of the American Chemical Society
- Publisher
- American Chemical Society (ACS)
- Published
- 2012-09-24
- Volume
- 134
- Issue
- 39
- Pages
- 16123-16126
- ISSN
- 0002-7863 (ISSN-L)
- 1520-5126
- PMC
- PMC3466019
- OpenAlex
- W2417424384
- Cited by
- 184
- References
- 25
- Citations by year
- 2026: 8 · 2025: 13 · 2024: 19 · 2023: 18 · 2022: 17 · 2021: 16 · 2020: 14 · 2019: 11 · 2018: 18 · 2017: 10 · 2016: 8 · 2015: 10 · 2014: 12 · 2013: 10
- FWCI
- 4.70
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of the American Chemical Society (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- American Chemical Society
- National Institutes of Health
- Office of the Vice Chancellor for Research University of Illinois at Urbana-Champaign
- Topics
- Physical Sciences › Chemistry › Organic Chemistry › Click Chemistry and Applications
- Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Biotin and Related Studies
- Keywords
- trehalose, Mycobacterium tuberculosis, mycobacteria, bioorthogonal labeling, bioorthogonal ligation, trehalose metabolism
- MeSH terms
- Alkynes, Azides, Fluorescent Dyes, Glycolipids, Mycobacterium, Trehalose
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review