Sequence Dependent Long Range Hole Transport in DNA

Abstract

A guanine radical cation (G +• ) was site-selectively generated in double stranded DNA and the charge transfer in different oligonucleotide sequences was investigated. The method is based on the competition between a charge transfer from G +• through the DNA and its trapping reaction with H 2 O. We analyzed the hole transfer from this G +• to a GGG unit through one, two, three, and four AT base pairs and found that the rate decreases by about 1 order of magnitude with each intervening AT base pair. This strong distance dependence led to a β-value of 0.7 ± 0.1 Å -1 . Within the time scale of this assay the charge transfer nearly vanished when the G +• was separated by four AT base pairs from the GGG unit. However, if the second or the third of the four intervening AT base pairs was exchanged by a GC base pair, the rate of the hole transfer from the G +• to the GGG unit increased by 2 orders of magnitude. In addition, a long-range charge transfer over 15 base pairs could be observed in a mixed strand that contained AT as well as GC base pairs. Because G +• can oxidize G but not A bases, the long-range charge transport can be explained by a hopping of the positive charge between the intervening G bases. Thus, the overall charge transport in a mixed strand is a multistep hopping process between G bases where the individual steps contribute to the overall rate. The distance dependence is no longer described by the β value of the superexchange mechanism.