A Universal Machine Learning Algorithm for Large-Scale Screening of Materials
Abstract
Application of machine learning (ML) methods for the determination of the gas adsorption capacities of nanomaterials, such as metal-organic frameworks (MOF), has been extensively investigated over the past few years as a computationally efficient alternative to time-consuming and computationally demanding molecular simulations. Depending on the thermodynamic conditions and the adsorbed gas, ML has been found to provide very accurate results. In this work, we go one step further and we introduce chemical intuition in our descriptors by using the "type" of the atoms in the structure, instead of the previously used building blocks, to account for the chemical character of the MOF. ML predictions for the methane and carbon dioxide adsorption capacities of several tens of thousands of hypothetical MOFs are evaluated at various thermodynamic conditions using the random forest algorithm. For all cases examined, the use of atom types instead of building blocks leads to significantly more accurate predictions, while the number of MOFs needed for the training of the ML algorithm in order to achieve a specified accuracy can be reduced by an order of magnitude. More importantly, since practically there are an unlimited number of building blocks that materials can be made of but a limited number of atom types, the proposed approach is more general and can be considered as universal. The universality and transferability was proved by predicting the adsorption properties of a completely different family of materials after the training of the ML algorithm in MOFs.
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Low-cost, topological, three-dimensional, one-hot chemical encoding, and geometric descriptors are often employed for this purpose in transition-metal chemistry.
“Low-cost, topological (5, 7, 32, 92-94), three-dimensional (95-100), one-hot chemical encoding (92, 101), and geometric (e.g., for MOF pores) (102-104) descriptors are often employed for this purpose in transition-metal chemistry.”
From Machine Learning for the Discovery, Design, and Engineering of Materials. (2022) · cites this paper as [92]
Cites
Breiman, L. (2001) · Machine Learning · doi:10.1023/a:1010933404324 · Cited by 133,538 · see citing works
Scikit-learn: Machine Learning in Python
Pedregosa, F., Varoquaux, G., Gramfort, A., Michel, V., Thirion, B., Grisel, O., Blondel, M., Müller, A., Nothman, J., Louppe, G., et al. (2012) · arXiv · doi:10.48550/arxiv.1201.0490 · Cited by 71,016 · see citing works
Fast Parallel Algorithms for Short-Range Molecular Dynamics
Plimpton, S. (1995) · Journal of Computational Physics · doi:10.1006/jcph.1995.1039 · Cited by 44,721 · see citing works
Jorgensen, W. L., & Tirado‐Rives, J. (1988) · Journal of the American Chemical Society · doi:10.1021/ja00214a001 · Cited by 5,018 · see citing works
Hydrogen Storage in Microporous Metal-Organic Frameworks
Rosi, N. L., Eckert, J., Eddaoudi, M., Vodak, D. T., Kim, J., O’Keeffe, M., & Yaghi, O. M. (2003) · Science · doi:10.1126/science.1083440 · Cited by 4,850 · see citing works
Molecular mechanics. The MM3 force field for hydrocarbons. 1
Allinger, N. L., Yuh, Y. H., & Lii, J. (1989) · Journal of the American Chemical Society · doi:10.1021/ja00205a001 · Cited by 2,804 · see citing works
Rowsell, J. L. C., & Yaghi, O. M. (2006) · Journal of the American Chemical Society · doi:10.1021/ja056639q · Cited by 1,850 · see citing works
Large-scale screening of hypothetical metal–organic frameworks
Wilmer, C. E., Leaf, M., Lee, C. Y., Farha, O. K., Hauser, B. G., Hupp, J. T., & Snurr, R. Q. (2012) · Nature Chemistry · doi:10.1038/nchem.1192 · Cited by 1,439 · see citing works
Gas Adsorption Sites in a Large-Pore Metal-Organic Framework
Rowsell, J. L. C., Spencer, E. C., Eckert, J., et al. (2005) · Science · doi:10.1126/science.1113247 · Cited by 896 · see citing works
Frost, H., Düren, T., & Snurr, R. Q. (2006) · The Journal of Physical Chemistry B · doi:10.1021/jp060433+ · Cited by 596 · see citing works
Structure–property relationships of porous materials for carbon dioxide separation and capture
Wilmer, C. E., Farha, O. K., Bae, Y., Hupp, J. T., & Snurr, R. Q. (2012) · Energy & Environmental Science · doi:10.1039/c2ee23201d · Cited by 388 · see citing works
Crystal Structure Prediction via Deep Learning
Ryan, K., Lengyel, J., & Shatruk, M. (2018) · Journal of the American Chemical Society · doi:10.1021/jacs.8b03913 · Cited by 351 · see citing works
Force-Field Prediction of Materials Properties in Metal-Organic Frameworks
Boyd, P. G., Moosavi, S. M., Witman, M. D., & Smit, B. (2016) · The Journal of Physical Chemistry Letters · doi:10.1021/acs.jpclett.6b02532 · Cited by 307 · see citing works
Fernández, M., Boyd, P. G., Daff, T. D., Aghaji, M. Z., & Woo, T. K. (2014) · The Journal of Physical Chemistry Letters · doi:10.1021/jz501331m · Cited by 297 · see citing works
Extension of the Universal Force Field to Metal–Organic Frameworks
Addicoat, M. A., Vankova, N., Akter, I. F., & Heine, T. (2014) · Journal of Chemical Theory and Computation · doi:10.1021/ct400952t · Cited by 296 · see citing works
Rowsell, J. L. C., Eckert, J., & Yaghi, O. M. (2005) · Journal of the American Chemical Society · doi:10.1021/ja0542690 · Cited by 294 · see citing works
Pardakhti, M., Moharreri, E., Wanik, D., Suib, S. L., & Srivastava, R. (2017) · ACS Combinatorial Science · doi:10.1021/acscombsci.7b00056 · Cited by 254 · see citing works
Extension of the Universal Force Field for Metal–Organic Frameworks
Coupry, D. E., Addicoat, M. A., & Heine, T. (2016) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.6b00664 · Cited by 244 · see citing works
Fernández, M., Woo, T. K., Wilmer, C. E., & Snurr, R. Q. (2013) · The Journal of Physical Chemistry C · doi:10.1021/jp4006422 · Cited by 232 · see citing works
In Silico Design of 2D and 3D Covalent Organic Frameworks for Methane Storage Applications
Mercado, R., Fu, R.-S., Yakutovich, A. V., Talirz, L., Harańczyk, M., & Smit, B. (2018) · Chemistry of Materials · doi:10.1021/acs.chemmater.8b01425 · Cited by 185 · see citing works
Chemically intuited, large-scale screening of MOFs by machine learning techniques
Borboudakis, G., Stergiannakos, T., Frysali, M. G., Klontzas, E., Tsamardinos, I., & Froudakis, G. E. (2017) · npj Computational Materials · doi:10.1038/s41524-017-0045-8 · Cited by 183 · see citing works
Self-citationFernandez, M., Trefiak, N. R., & Woo, T. K. (2013) · The Journal of Physical Chemistry C · doi:10.1021/jp404287t · Cited by 167 · see citing works
Fernández, M., & Barnard, A. S. (2016) · ACS Combinatorial Science · doi:10.1021/acscombsci.5b00188 · Cited by 107 · see citing works
Tsamardinos, I., Fanourgakis, G. S., Greasidou, E., Klontzas, E., Gkagkas, K., & Froudakis, G. E. (2020) · Microporous and Mesoporous Materials · doi:10.1016/j.micromeso.2020.110160 · Cited by 52 · see citing works
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Nandy, A., Duan, C., Taylor, M. G., Liu, F., Steeves, A. H., & Kulik, H. J. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.1c00347 · Cited by 358 · see citing works
Machine Learning for the Discovery, Design, and Engineering of Materials.
Duan, C., Nandy, A., & Kulik, H. J. (2022) · Annual Review of Chemical and Biomolecular Engineering · doi:10.1146/annurev-chembioeng-092320-120230 · Cited by 69 · see citing works
Use of metamodels for rapid discovery of narrow bandgap oxide photocatalysts
Mai, H., Le, T. C., Hisatomi, T., Chen, D., Domen, K., Winkler, D. A., & Caruso, R. A. (2021) · iScience · doi:10.1016/j.isci.2021.103068 · Cited by 32 · see citing works
- Authors
- Fanourgakis, G. S., Gkagkas, K., Tylianakis, E., & Froudakis, G. E.
- Affiliations
- University of Crete (GR)
- Toyota Motor Corporation (Belgium) (BE)
- Corresponding author
- Froudakis, George E.
- Venue
- Journal of the American Chemical Society
- Publisher
- American Chemical Society (ACS)
- Published
- 2020-02-04
- Volume
- 142
- Issue
- 8
- Pages
- 3814-3822
- ISSN
- 0002-7863 (ISSN-L)
- 1520-5126
- OpenAlex
- W3004838941
- Cited by
- 180
- References
- 24
- Citations by year
- 2026: 22 · 2025: 27 · 2024: 31 · 2023: 31 · 2022: 31 · 2021: 25 · 2020: 13
- FWCI
- 9.73
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Journal of the American Chemical Society (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Toyota Motor Europe NV/SA
- Topics
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Physical Sciences › Chemistry › Inorganic Chemistry › Metal-Organic Frameworks: Synthesis and Applications
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Advanced Chemical Physics Studies
- Keywords
- metal-organic frameworks, gas adsorption capacity, methane adsorption, CO2 adsorption, random forest, materials screening, transferability, computational materials design, thermodynamic conditions
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