Novel Oligonucleotides Containing Two 3′-Ends Complementary to Target mRNA Show Optimal Gene-Silencing Activity
Abstract
Oligonucleotides are being employed for gene-silencing activity by a variety of mechanisms, including antisense, ribozyme, and siRNA. In the present studies, we designed novel oligonucleotides complementary to targeted mRNAs and studied the effect of 3'-end exposure and oligonucleotide length on gene-silencing activity. We synthesized both oligoribonucleotides (RNAs) and oligodeoxynucleotides (DNAs) with phosphorothioate backbones, consisting of two identical segments complementary to the targeted mRNA attached through their 5'-ends, thereby containing two accessible 3'-ends; these compounds are referred to as gene-silencing oligonucleotides (GSOs). RNA and/or DNA GSOs targeted to MyD88, VEGF, and TLR9 mRNAs had more potent gene-silencing activity than did antisense phosphorothioate oligonucleotides (PS-oligos) in cell-based assays and in vivo. Of the different lengths of GSOs evaluated, 19-mer long RNA and DNA GSOs had the best gene-silencing activity both in vitro and in vivo. These results suggest that GSOs are novel agents for gene silencing that can be delivered systemically with broader applicability.
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Linking of two ASOs via their 5' ends resulted in better systemic efficacy compared to monomeric ASO variants.
“Linking of two ASOs via their 5’ ends resulted in better systemic efficacy compared to monomeric ASO variants46.”
From A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system (2019) · cites this paper as [46]
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- Authors
- Bhagat, L., Putta, M. R., Wang, D., Yu, D., Lan, T., Jiang, W., Sun, Z., Wang, H., Tang, J. X., La Monica, N., Kandimalla, E. R., & Agrawal, S.
- Affiliations
- Idera Pharmaceuticals (United States) (US)
- Idera Pharmaceuticals, Inc., 167 Sidney Street, Cambridge, Massachusetts 02139, United States
- Corresponding author
- Agrawal, Sudhir
- Venue
- Journal of Medicinal Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2011-04-05
- Volume
- 54
- Issue
- 8
- Pages
- 3027-3036
- ISSN
- 0022-2623 (ISSN-L)
- 1520-4804
- OpenAlex
- W2326623357
- Cited by
- 20
- References
- 63
- Citations by year
- 2026: 2 · 2024: 1 · 2023: 2 · 2021: 2 · 2020: 1 · 2019: 2 · 2018: 1 · 2017: 3 · 2016: 1 · 2015: 1 · 2014: 1 · 2013: 2
- FWCI
- 0.39
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Medicinal Chemistry (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- gene silencing, oligonucleotides, oligoribonucleotides, oligodeoxynucleotides, phosphorothioate backbone, antisense oligonucleotides, oligonucleotide length, MyD88, vascular endothelial growth factor, TLR9, siRNA, ribozymes, systemic drug delivery
- MeSH terms
- Animals, Base Sequence, Cell Line, Humans, Oligonucleotides, RNA, Messenger, DNA Primers, Gene Silencing, Mice, Myeloid Differentiation Factor 88
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