The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
A Multiscale Coarse-Graining Method for Biomolecular Systems
Abstract
A new approach is presented for obtaining coarse-grained (CG) force fields from fully atomistic molecular dynamics (MD) trajectories. The method is demonstrated by applying it to derive a CG model for the dimyristoylphosphatidylcholine (DMPC) lipid bilayer. The coarse-graining of the interparticle force field is accomplished by an application of a force-matching procedure to the force data obtained from an explicit atomistic MD simulation of the biomolecular system of interest. Hence, the method is termed a "multiscale" CG (MS-CG) approach in which explicit atomistic-level forces are propagated upward in scale to the coarse-grained level. The CG sites in the lipid bilayer application were associated with the centers-of-mass of atomic groups because of the simplicity in the evaluation of the forces acting on them from the atomistic data. The resulting CG lipid bilayer model is shown to accurately reproduce the structural properties of the phospholipid bilayer.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Coarse Grained Model for Semiquantitative Lipid Simulations
Marrink, S. J., de Vries, A. H., & Mark, A. E. (2004) · The Journal of Physical Chemistry B · doi:10.1021/jp036508g · Cited by 2,257
Interatomic Potentials from First-Principles Calculations: The Force-Matching Method
Ercolessi, F., & Adams, J. B. (1994) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/26/8/005 · Cited by 1,455
Meyer, H., Biermann, O., Faller, R., Reith, D., & Müller-Plathe, F. (2000) · The Journal of Chemical Physics · doi:10.1063/1.1308542 · Cited by 128
Cited by
Computer Simulation of Liquids
Allen, M. P., & Tildesley, D. J. (2017) · doi:10.1093/oso/9780198803195.001.0001 · Cited by 20,945
Perspective: Coarse-grained models for biomolecular systems
Noid, W. G. (2013) · The Journal of Chemical Physics · doi:10.1063/1.4818908 · Cited by 893
Multiscale simulation of soft matter systems–from the atomistic to the coarse-grained level and back
Peter, C., & Kremer, K. (2009) · Soft Matter · doi:10.1039/b912027k · Cited by 465
Lipids on the move: Simulations of membrane pores, domains, stalks and curves
Marrink, S. J., de Vries, A. H., & Tieleman, D. P. (2009) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2008.10.006 · Cited by 440
Understanding Ionic Liquids through Atomistic and Coarse-Grained Molecular Dynamics Simulations
Wang, Y., Jiang, W., Yan, T., & Voth, G. A. (2007) · Accounts of Chemical Research · doi:10.1021/ar700160p · Cited by 331
Self-citation
Metadata
- Authors
- Izvekov, S., & Voth, G. A.
- Venue
- The Journal of Physical Chemistry B
- Publisher
- American Chemical Society (ACS)
- Published
- 2005-01-22
- Volume
- 109
- Issue
- 7
- Pages
- 2469-2473
- ISSN
- 1520-5207 (ISSN-L)
- 1520-6106
- OpenAlex
- W2061308254
- Cited by
- 1,197
- References
- 3
- FWCI
- 11.98
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: A Multiscale Coarse-Graining Method for Biomolecular Systems. https://app.cochat.ai/papers/10.1021/jp044629q
- The paper
- Izvekov, S., & Voth, G. A. (2005). A Multiscale Coarse-Graining Method for Biomolecular Systems. The Journal of Physical Chemistry B. https://doi.org/10.1021/jp044629q
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
