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Proteomics applied to exercise physiology: A cutting‐edge technology

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Comparison between chaotropic and detergent‐based sample preparation workflow in tendon for mass spectrometry analysis

Kharaz, Y. A., Zamboulis, D. E., Sanders, K., Comerford, E. J., Clegg, P., & Peffers, M. J. (2017) · PROTEOMICS · doi:10.1002/pmic.201700018 · Cited by 37 · see citing works

Not just fat: investigating the proteome of cetacean blubber tissue

Kershaw, J. L., Botting, C. H., Brownlow, A. C., & Hall, A. J. (2018) · Conservation Physiology · doi:10.1093/conphys/coy003 · Cited by 37 · see citing works

Heat shock protein 60 causes osteoclastic bone resorption via toll-like receptor-2 in estrogen deficiency

Koh, J., Lee, Y., Kim, Y. S., Park, S.-H., Lee, S. H., Kim, H., Lee, M., Lee, K., & Kim, G. S. (2009) · Bone · doi:10.1016/j.bone.2009.06.007 · Cited by 37 · see citing works

Characterization of Proteomes Extracted through Collagen-based Stable Isotope and Radiocarbon Dating Methods

Wadsworth, C., & Buckley, M. (2017) · Journal of Proteome Research · doi:10.1021/acs.jproteome.7b00624 · Cited by 35 · see citing works

Molecular and Cellular Crosstalk between Bone and Brain: Accessing Bidirectional Neural and Musculoskeletal Signaling during Aging and Disease

Schurman, C. A., Burton, J. B., Rose, J., Ellerby, L., Alliston, T. N., & Schilling, B. (2023) · Journal of Bone Metabolism · doi:10.11005/jbm.2023.30.1.1 · Cited by 33 · see citing works

Comparative proteomic analysis of fluoride treated rat bone provides new insights into the molecular mechanisms of fluoride toxicity

Yan, W., Zeng, B., Zhang, H., Chen, C., Wu, Y., Wang, N., Wu, Y., Zhao, D., Zhao, Y., Iqbal, J., et al. (2018) · Toxicology Letters · doi:10.1016/j.toxlet.2018.04.006 · Cited by 32 · see citing works

Plant Biotic Stress and Proteomics

Sergeant, K., & Renaut, J. (2010) · Current Proteomics · doi:10.2174/157016410793611765 · Cited by 28 · see citing works

Homer1 mediates CaSR-dependent activation of mTOR complex 2 and initiates a novel pathway for AKT-dependent β-catenin stabilization in osteoblasts

Rybchyn, M. S., Islam, K. S., Brennan‐Speranza, T. C., Cheng, Z., Brennan, S. C., Chang, W., Mason, R. S., & Conigrave, A. D. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.006587 · Cited by 27 · see citing works

Paleoproteomics: An Introduction to the Analysis of Ancient Proteins by Soft Ionisation Mass Spectrometry

Buckley, M. (2018) · Population genomics · doi:10.1007/13836_2018_50 · Cited by 26 · see citing works

Palaeoproteomics of bird bones for taxonomic classification

Horn, I. R., Kenens, Y., Palmblad, M., van der Plas-Duivesteijn, S. J., Langeveld, B. W., Meijer, H. J. M., Dalebout, H., Marissen, R., Fischer, A., Florens, F. B. V., et al. (2019) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlz012 · Cited by 26 · see citing works

Valvular Aortic Stenosis: A Proteomic Insight

Gil-Dones, F., Martín-Rojas, T., Lopez-Almodovar, L. F., de la Cuesta, F., Dardé, V. M., Álvarez‐Llamas, G., Juárez-Tosina, R., Barroso-García, G., Vivanco, F., Padial, L. R., et al. (2010) · Clinical Medicine Insights Cardiology · doi:10.4137/cmc.s3884 · Cited by 26 · see citing works

Acid bone lysate activates TGFβ signalling in human oral fibroblasts

Strauß, F. J., Stähli, A., Beer, L., Mitulović, G., Gilmozzi, V., Haspel, N., Schwab, G., & Gruber, R. (2018) · Scientific Reports · doi:10.1038/s41598-018-34418-3 · Cited by 25 · see citing works

Proteomic Analysis of Gingival Tissue and Alveolar Bone during Alveolar Bone Healing

Yang, H., Kwon, J. S., Kook, M.-S., Kang, S. S., Kim, S. E., Sohn, S., Jung, S., Kwon, S., Kim, H.-S., Lee, J. H., et al. (2013) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m112.026740 · Cited by 25 · see citing works

Proteomic and N-Terminomic TAILS Analyses of Human Alveolar Bone Proteins: Improved Protein Extraction Methodology and LysargiNase Digestion Strategies Increase Proteome Coverage and Missing Protein Identification

Bell, P. A., Solis, N., Kizhakkedathu, J. N., Matthew, I., & Overall, C. M. (2019) · Journal of Proteome Research · doi:10.1021/acs.jproteome.9b00445 · Cited by 25 · see citing works

PSMD14 Stabilizes SLC7A11 to Ameliorate Glucocorticoid‐Induced Osteoporosis by Suppressing Osteocyte Ferroptosis

Shi, Y., Tang, Q., Sheng, S., Jiang, H., Jin, C., Zhou, C., Xie, C., Zheng, L., Zhang, D., Xu, H., et al. (2025) · Advanced Science · doi:10.1002/advs.202414902 · Cited by 24 · see citing works

The bone is the major source of high circulating intact fibroblast growth factor-23 in acute murine polymicrobial sepsis induced by cecum ligation puncture

Bayer, J., Vaghela, R., Drechsler, S., Osuchowski, M. F., Erben, R. G., & Andrukhova, O. (2021) · PLoS ONE · doi:10.1371/journal.pone.0251317 · Cited by 24 · see citing works

Proteomic and Transcriptomic Approaches for Studying Bone Regeneration in Health and Systemically Compromised Conditions

Calciolari, E., & Donos, N. (2020) · PROTEOMICS - CLINICAL APPLICATIONS · doi:10.1002/prca.201900084 · Cited by 24 · see citing works

A proteomic study of protein variation between osteopenic and age-matched control bone tissue

Chaput, C. D., Dangott, L. J., Rahm, M. D., Hitt, K. D., Stewart, D. S., & Sampson, H. W. (2012) · Experimental Biology and Medicine · doi:10.1258/ebm.2012.011374 · Cited by 23 · see citing works

Subchondral bone proteomics in osteoarthritis: Current status and perspectives

Chan, P. M., Zhu, L., Wen, C. Y., & Chiu, P. (2015) · Journal of Orthopaedic Translation · doi:10.1016/j.jot.2015.02.002 · Cited by 23 · see citing works

Changes in the soluble bone proteome of reared white seabream (Diplodus sargus) with skeletal deformities

Silva, T. S., Cordeiro, O. D., Richard, N., Conceição, L. E. C., & Rodrigues, P. M. (2010) · Comparative Biochemistry and Physiology Part D Genomics and Proteomics · doi:10.1016/j.cbd.2010.03.008 · Cited by 23 · see citing works

CKIP-1 knockout offsets osteoporosis induced by simulated microgravity

Zhang, X., Wang, Q., Wan, Z., Li, J., Liu, L., & Zhang, X. (2016) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2016.09.007 · Cited by 22 · see citing works

A novel methodological approach to simultaneously extract high-quality total RNA and proteins from cortical and trabecular bone

Faraldi, M., Mangiavini, L., Conte, C., Banfi, G., Napoli, N., & Lombardi, G. (2022) · Open Biology · doi:10.1098/rsob.210387 · Cited by 21 · see citing works

The use of omics profiling to improve outcomes of bone regeneration and osseointegration. How far are we from personalized medicine in dentistry?

Calciolari, E., & Donos, N. (2018) · Journal of Proteomics · doi:10.1016/j.jprot.2018.01.017 · Cited by 21 · see citing works

Distinct Effects of a High Fat Diet on Bone in Skeletally Mature and Developing Male C57BL/6J Mice

Ross, D., Yeh, T.-H., King, S., Mathers, J., Rybchyn, M. S., Neist, E., Cameron, M. S., Tacey, A., Girgis, C. M., Levinger, I., et al. (2021) · Nutrients · doi:10.3390/nu13051666 · Cited by 20 · see citing works

Deep coverage and quantification of the bone proteome provides enhanced opportunities for new discoveries in skeletal biology and disease

Rose, J., Schurman, C. A., King, C. D., Bons, J., Burton, J. B., Srivastava, S., O’Broin, A., Alliston, T. N., & Schilling, B. (2023) · PLoS ONE · doi:10.1371/journal.pone.0292268 · Cited by 20 · see citing works

Proteomic Analysis of Bone Tissues of Patients with Osteonecrosis of the Femoral Head

Zhang, H., Zhang, L., Wang, J., Ma, Y., Zhang, J., Mo, F., Zhang, W., Yan, S., Yang, G., & Lin, B. (2009) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2009.0057 · Cited by 20 · see citing works

Effective protein extraction combined with data independent acquisition analysis reveals a comprehensive and quantifiable insight into the proteomes of articular cartilage and subchondral bone

Bundgaard, L., Åhrman, E., Malmström, J. A., Keller, U. A. D., Walters, M., & Jacobsen, S. E. (2021) · Osteoarthritis and Cartilage · doi:10.1016/j.joca.2021.09.006 · Cited by 19 · see citing works

A method for whole protein isolation from human cranial bone

Lyon, S. M., Mayampurath, A. M., Rogers, M., Wolfgeher, D. J., Fisher, S. M., Volchenboum, S. L., He, T., & Reid, R. R. (2016) · Analytical Biochemistry · doi:10.1016/j.ab.2016.09.021 · Cited by 19 · see citing works

Proteomic studies of bone and skeletal health outcomes

Nielson, C. M., Jacobs, J., & ORWOLL, E. S. (2019) · Bone · doi:10.1016/j.bone.2019.03.032 · Cited by 19 · see citing works

Exploring the Bone Proteome to Help Explain Altered Bone Remodeling and Preservation of Bone Architecture and Strength in Hibernating Marmots

Doherty, A. H., Roteliuk, D. M., Gookin, S. E., McGrew, A. K., Broccardo, C. J., Condon, K. W., Prenni, J. E., Wojda, S. J., Florant, G. L., & Donahue, S. W. (2016) · Physiological and Biochemical Zoology · doi:10.1086/687413 · Cited by 19 · see citing works

A comprehensive analysis of sialolith proteins and the clinical implications

Busso, C. S., Guidry, J. J., González, J., Zorba, V., Son, L. S., Winsauer, P. J., & Walvekar, R. R. (2020) · Clinical Proteomics · doi:10.1186/s12014-020-09275-w · Cited by 18 · see citing works

Second-harmonic generation imaging of collagen in ancient bone

Thomas, B. C., McIntosh, D. G., Fildes, T., Smith, L., Hargrave, F., Islam, M., Thompson, T. J. U., Layfield, R., Scott, D., Shaw, B., et al. (2017) · Bone Reports · doi:10.1016/j.bonr.2017.10.005 · Cited by 16 · see citing works

Proteomic and lipidomic analysis of mammoth bone by high-resolution tandem mass spectrometry coupled with liquid chromatography

Kostyukevich, Y., Bugrova, A. E., Chagovets, V., Brzhozovskiy, A. G., Indeykina, M. I., Vanyushkina, A., Zherebker, A., Mitina, A., Kononikhin, A. S., Popov, I. A., et al. (2018) · European Journal of Mass Spectrometry · doi:10.1177/1469066718813728 · Cited by 15 · see citing works

Molecular signatures written in bone proteins of 79 AD victims from Herculaneum and Pompeii

Ntasi, G., Palomo, I. R., Marino, G., Piaz, F. D., Cappellini, E., Birolo, L., & Petrone, P. (2022) · Scientific Reports · doi:10.1038/s41598-022-12042-6 · Cited by 15 · see citing works

An activity-maintaining sequential protein extraction method for bioactive assay and proteome analysis of velvet antlers

Sui, Z., Yuan, H., Liang, Z., Zhao, Q., Wu, Q., Xia, S., Zhang, L., Huo, Y., & Zhang, Y. (2013) · Talanta · doi:10.1016/j.talanta.2013.01.015 · Cited by 15 · see citing works

HPLC–MS/MS shotgun proteomic research of deer antlers with multiparallel protein extraction methods

Gao, L., Tao, D., Shan, Y., Liang, Z., Zhang, L., Huo, Y., & Zhang, Y. (2010) · Journal of Chromatography B · doi:10.1016/j.jchromb.2010.10.022 · Cited by 14 · see citing works

Poor preservation of antibodies in archaeological human bone and dentine

Kendall, R., Hendy, J., Collins, M. J., Millard, A. R., & Gowland, R. L. (2016) · STAR Science & Technology of Archaeological Research · doi:10.1080/20548923.2015.1133117 · Cited by 13 · see citing works

In-Depth Proteomic Analysis of the Porcine Retina by Use of a four Step Differential Extraction Bottom up LC MS Platform

Funke, S., Markowitsch, S. D., Schmelter, C., Perumal, N., Mwiiri, F. K., Gabel-Scheurich, S., Pfeiffer, N., & Grus, F. H. (2016) · Molecular Neurobiology · doi:10.1007/s12035-016-0172-0 · Cited by 13 · see citing works

Proteomics in Animal Health and Disease

Eckersall, P. D., & McLaughlin, M. (2011) · doi:10.1002/9780470960660.ch10 · Cited by 13 · see citing works

Multi-omics analysis of bone marrow mesenchymal stem cell differentiation differences in osteoporosis

Feng, K., Yu, M., Lou, X., Wang, D., Wang, L., & Ren, W. (2023) · Genomics · doi:10.1016/j.ygeno.2023.110668 · Cited by 12 · see citing works

Development of an Optimal Protocol for the Proteomic Analysis of Stenotic and Healthy Aortic Valves

Gil-Dones, F., Martín-Rojas, T., Lopez-Almodovar, L. F., Juárez-Tosina, R., de la Cuesta, F., Álvarez‐Llamas, G., Alonso‐Orgaz, S., Vivanco, F., Padial, L. R., & Barderas, M. G. (2010) · Revista Española de Cardiología (English Edition) · doi:10.1016/s1885-5857(10)70008-6 · Cited by 12 · see citing works

Automation of nanoflow liquid chromatography‐tandem mass spectrometry for proteome and peptide profiling analysis by using a monolithic analytical capillary column

Jiang, X., Dong, J., Wang, F., Feng, S., Ye, M., & Zou, H. (2008) · Electrophoresis · doi:10.1002/elps.200700513 · Cited by 12 · see citing works

Proteomic and genomic analysis of acid dentin lysate with focus on TGF-β signaling

Nasirzade, J., Kargarpour, Z., Mitulović, G., Strauß, F. J., Panahipour, L., Schwarz, F., & Gruber, R. (2021) · Scientific Reports · doi:10.1038/s41598-021-89996-6 · Cited by 11 · see citing works

Identification of donkey-hide gelatin and donkey-bone gelatin based on marker peptides

Zhang, J., Lu, Y.-H., Zheng, S., Ma, Z., Wu, M., Zhang, Y., & Cao, H. (2023) · LWT · doi:10.1016/j.lwt.2023.114881 · Cited by 11 · see citing works

Pluripotent stem cells for skeletal tissue engineering

Ferreira, M. J. S., Mancini, F. E., Humphreys, P. A., Ogene, L., Buckley, M., Domingos, M. A. N., & Kimber, S. J. (2021) · Critical Reviews in Biotechnology · doi:10.1080/07388551.2021.1968785 · Cited by 11 · see citing works

MiR‐377 inhibits wear particle‐induced osteolysis via targeting RANKL

Li, W., Wang, X., Chang, L., & Wang, F. (2019) · Cell Biology International · doi:10.1002/cbin.11143 · Cited by 11 · see citing works

Age-Related Changes in Post-Translational Modifications of Proteins from Whole Male and Female Skeletal Elements

Johnston, E., & Buckley, M. (2023) · Molecules · doi:10.3390/molecules28134899 · Cited by 10 · see citing works

A proteomics approach to study mouse long bones: examining baseline differences and mechanical loading-induced bone formation in young-adult and old mice

Chermside‐Scabbo, C. J., Shuster, J. T., Erdmann-Gilmore, P., Tycksen, E., Zhang, Q., Townsend, R. R., & Silva, M. J. (2024) · Aging · doi:10.18632/aging.206131 · Cited by 10 · see citing works

Obtención de un protocolo óptimo para el análisis proteómico de válvulas aórticas humanas sanas y estenóticas

Gil-Dones, F., Martín-Rojas, T., Lopez-Almodovar, L. F., Juárez-Tosina, R., de la Cuesta, F., Álvarez‐Llamas, G., Alonso‐Orgaz, S., Vivanco, F., Padial, L. R., & Barderas, M. G. (2010) · Revista Española de Cardiología · doi:10.1016/s0300-8932(10)70008-7 · Cited by 10 · see citing works

Robust assessment of sample preparation protocols for proteomics of cells and tissues

Gomes, F. A., Souza, D. R., Massafera, M. P., & Ronsein, G. E. (2024) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2024.141030 · Cited by 9 · see citing works

Composite Scaffold Materials of Nanocerium Oxide Doped with Allograft Bone: Dual Optimization Based on Anti‐Inflammatory Properties and Promotion of Osteogenic Mineralization

Li, Y., Huang, Y., Yang, H., Li, Y., Luo, G., Ma, Y., Cheng, H., Long, Y., Xia, W., Liu, H., et al. (2024) · Advanced Healthcare Materials · doi:10.1002/adhm.202403006 · Cited by 9 · see citing works

A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage

Desjardin, C., Balliau, T., Valot, B., Zivy, M., Wimel, L., Guérin, G., Cribiu, E., & Schibler, L. (2012) · PROTEOMICS · doi:10.1002/pmic.201100366 · Cited by 9 · see citing works

S100A8/A9 Amyloidosis in the Ageing Prostate: Relating Ex Vivo and In Vitro Studies

Gharibyan, A. L., Raveh, D., & Morozova‐Roche, L. A. (2012) · Methods in molecular biology · doi:10.1007/978-1-61779-551-0_26 · Cited by 9 · see citing works

Peptidomic analysis of cartilage and subchondral bone in OA patients

Gatenholm, B., Gobom, J., Skillbäck, T. B., Blennow, K., Zetterberg, H., & Brittberg, M. (2019) · European Journal of Clinical Investigation · doi:10.1111/eci.13082 · Cited by 9 · see citing works

Informatics Approaches to Forensic Body Fluid Identification by Proteomic Mass Spectrometry

Liu, W., Butler, E., Yang, H., Fenyö, D., & Siegel, D. S. (2019) · ACS symposium series · doi:10.1021/bk-2019-1339.ch005 · Cited by 8 · see citing works

Using “-omics” Data to Inform Genome-wide Association Studies (GWASs) in the Osteoporosis Field

Abood, A., & Farber, C. R. (2021) · Current Osteoporosis Reports · doi:10.1007/s11914-021-00684-w · Cited by 8 · see citing works

Differentiating samples and experimental protocols by direct comparison of tandem mass spectra

van der Plas-Duivesteijn, S. J., Wulff, T., Klychnikov, O. I., Ohana, D., Dalebout, H., van Veelen, P. A., de Keijzer, J., Nessen, M. A., van der Burgt, Y. E. M., Deelder, A. M., et al. (2016) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.7494 · Cited by 8 · see citing works

Proteomics in the Analysis of Forensic, Archaeological, and Paleontological Bone

Buckley, M. (2019) · ACS symposium series · doi:10.1021/bk-2019-1339.ch008 · Cited by 7 · see citing works

Cytoskeletal and extracellular matrix proteins resist the burning of bones

Díaz-Martín, R. D., Ambrosio, J. R., Mondragón‐Flores, R., Gonzáles-Pozos, S., & Valencia-Caballero, L. (2019) · Forensic Science International · doi:10.1016/j.forsciint.2019.110027 · Cited by 7 · see citing works

Hofmeister Ions‐Induced Thinning of Gelatin to Enhance 3D Printing Precision

Chee, H. L., Koo, J. W., Sim, E. E. I., Zhu, Q., Gao, X. D., Ramli, M. F. H., Young, J. L., Holle, A. W., & Wang, F. (2024) · Advanced Materials Technologies · doi:10.1002/admt.202302230 · Cited by 7 · see citing works

NextGen Serology: Leveraging Mass Spectrometry for Protein-Based Human Body Fluid Identification

McKiernan, H. E., Brown, C. O., Arantes, L. C., Danielson, P. B., & Legg, K. M. (2019) · ACS symposium series · doi:10.1021/bk-2019-1339.ch004 · Cited by 7 · see citing works

Usefulness of protein analysis for detecting pathologies in bone remains

Pérez-Martínez, C., Prieto-Bonete, G., Pérez-Cárceles, M. D., & Maldonado, A. L. (2015) · Forensic Science International · doi:10.1016/j.forsciint.2015.11.009 · Cited by 7 · see citing works

Method Development of Efficient Protein Extraction in Bone Tissue for Proteome Analysis J. Proteome Res. 2007, 6, 2287−2294.

Jiang, X., Ye, M., Jiang, X., Liu, G., Feng, S., Cui, L., & Zou, H. (2007) · Journal of Proteome Research · doi:10.1021/pr078006b · Cited by 13 · see citing works

Bone protein extraction without demineralization using principles from hydroxyapatite chromatography

Cleland, T. P., & Vashishth, D. (2014) · Analytical Biochemistry · doi:10.1016/j.ab.2014.12.006 · Cited by 49 · see citing works

Recent advances in protein extraction methods from bone tissue for proteomics analysis

do Nascimento, K. B., Silva, B. L. G., Pinotti, F. E., Puetate, J. C. S., Guimarães, M. R., Marcantonio, C. C., & Marcantonio, R. A. C. (2026) · Royal Society Open Science · doi:10.1098/rsos.261692

Proteomic and N-Terminomic TAILS Analyses of Human Alveolar Bone Proteins: Improved Protein Extraction Methodology and LysargiNase Digestion Strategies Increase Proteome Coverage and Missing Protein Identification

Bell, P. A., Solis, N., Kizhakkedathu, J. N., Matthew, I., & Overall, C. M. (2019) · Journal of Proteome Research · doi:10.1021/acs.jproteome.9b00445 · Cited by 25 · see citing works

Bone protein “extractomics”: comparing the efficiency of bone protein extractions ofGallus gallusin tandem mass spectrometry, with an eye towards paleoproteomics

Schroeter, E. R., DeHart, C. J., Schweitzer, M. H., Thomas, P. M., & Kelleher, N. L. (2016) · PeerJ · doi:10.7717/peerj.2603 · Cited by 50 · see citing works