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Artificial intelligence in cancer target identification and drug discovery

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Interactome: gateway into systems biology

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Three-dimensional reconstruction of protein networks provides insight into human genetic disease

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A systematic approach to modeling, capturing, and disseminating proteomics experimental data

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Network-based methods for human disease gene prediction

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Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

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A strategy for the identification of proteins targeted by thioredoxin

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A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies

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“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

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Modularity and Extreme Edges of the Internet

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The use of mass spectrometry for the proteomic analysis of glycosylation

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Promises and Challenges of Big Data Computing in Health Sciences

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Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions

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Advances in membrane receptor screening and analysis

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GCNG: graph convolutional networks for inferring gene interaction from spatial transcriptomics data

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Analysis of recombinant yeast decapping enzyme

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From Gene Networks to Gene FunctionPreprint

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Analysis of wild tomato introgression lines elucidates the genetic basis of transcriptome and metabolome variation underlying fruit traits and pathogen response

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The Impact of Multifunctional Genes on "Guilt by Association" Analysis

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A high resolution atlas of gene expression in the domestic sheep (Ovis aries)

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Molecular Classification and Survival Prediction in Human Gliomas Based on Proteome Analysis

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HAPPI: an online database of comprehensive human annotated and predicted protein interactions

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An Integrated Probabilistic Model for Functional Prediction of Proteins

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Arabidopsis GERANYLGERANYL DIPHOSPHATE SYNTHASE 11 is a hub isozyme required for the production of most photosynthesis‐related isoprenoids

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Gene networks and the neuroendocrine regulation of puberty

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INstruct: a database of high-quality 3D structurally resolved protein interactome networks

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DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction

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Plant functional genomics

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Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding

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The metabolome 18 years on: a concept comes of age

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Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers

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Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair.

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Refined phylogenetic profiles method for predicting protein-protein interactions

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Functional genomics via metabolic footprinting: monitoring metabolite secretion by Escherichia coli tryptophan metabolism mutants using FT–IR and direct injection electrospray mass spectrometry

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An Atlas of Protein-Protein Interactions Across Mouse Tissues

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Advances in Proteomic Technologies

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ANAC017 Coordinates Organellar Functions and Stress Responses by Reprogramming Retrograde Signaling

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Exploring the mechanism of TCM formulae in the treatment of different types of coronary heart disease by network pharmacology and machining learning

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Several geranylgeranyl diphosphate synthase isoforms supply metabolic substrates for carotenoid biosynthesis in tomato

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Biological Mechanisms of Glioma Invasion and Potential Therapeutic Targets

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Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion

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Genome-wide expression profiling of schizophrenia using a large combined cohort

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The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine

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Predicting tissue-specific gene expression from whole blood transcriptome

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The integrated landscape of causal genes and pathways in schizophrenia

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SDN2GO: An Integrated Deep Learning Model for Protein Function Prediction

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Expression of a Tumor-Related Gene Network Increases in the Mammalian Hypothalamus at the Time of Female Puberty

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A Highly Efficient Approach to Protein Interactome Mapping Based on Collaborative Filtering Framework

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Diet, Nutrition, and Cancer Prevention: The Postgenomic Era

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Efficient embedding of complex networks to hyperbolic space via their Laplacian

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Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis

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Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference

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KELLER: estimating time-varying interactions between genes

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Increasing confidence of protein interactomes using network topological metrics

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Advances in protein-protein interaction network analysis for Parkinson's disease

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The role of indirect connections in gene networks in predicting function

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Nonredundant Roles of Mitochondria-associated F-Box Proteins Mfb1 and Mdm30 in Maintenance of Mitochondrial Morphology in Yeast

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