Publishing on the semantic web
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Linked, structured data form the basis of the semantic web, an extension of the WWW that promises improved information management and search capability.
“Such linked, structured data form the basis of the semantic web, an extension of the WWW that promises improved information management and search capability61.”
From The BioPAX community standard for pathway data sharing (2010) · cites this paper as [61]
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The BioPAX community standard for pathway data sharing
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Yaqoob, I., Hashem, I. A. T., Gani, A., Mokhtar, S., Ahmed, E., Anuar, N. B., & Vasilakos, A. V. (2016) · International Journal of Information Management · doi:10.1016/j.ijinfomgt.2016.07.009 · Cited by 410 · see citing works
Fundamentals of Clinical Data Science
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Drug repositioning for orphan diseases
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A wiki for the life sciences where authorship matters
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Extracting macroscopic information from Web links
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Biological knowledge management: the emerging role of the Semantic Web technologies
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Feature-based opinion mining through ontologies
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“The semantic Web was conceived with the aim of adding semantics to the data published on the Web (i.e., establish the meaning of the data), thus allowing machines to be able to process these data in a way similar to that of humans (Berners-Lee & Hendler, 2001).”
MethodUser Evaluation of Websites: From First Impression to Recommendation
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“Such objective features of website content are focused for example when examining the World Wide Web as a semantic web (Berners-Lee, 2001; Hendler, 2003), when optimizing content indexing for search engines or for information searches in general (e.g., Fauzi & Belkhatir, 2010; Hendler et al., 2008;…”
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From XML to RDF: how semantic web technologies will change the design of 'omic' standards
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“In this regard, RDF, by operating at semantic level, offers a uniform data representation medium that permits system interoperability through shared ontolog”
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“As we approach the semantic web (‘‘Web 3.0’’), nonfinancial content will include markups that enable machines to understand context (Berners-Lee and Hendler 2001).”
InfluentialLife sciences on the Semantic Web: the Neurocommons and beyond
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Exposing multi-relational networks to single-relational network analysis algorithms
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“Furthermore, the multi-relational network is the foundational data structure of the emerging Web of Data [16, 17].”
BackgroundThe use of web search engines in information science research
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“Although it is still impossible to compute with unstructured text as easily as with structured databases, there is a possible combination of community efforts and computational advances that can help to bridge the gap called the semantic web (Berners-Lee and Hendler, 2001).”
BackgroundThe international glycan repository GlyTouCan version 3.0
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“Recent advancements in online recommender systems are enhanced by the “ Semantic Web ” [30], which allows for the extraction of vast amounts of information through metadata mining and artificial intelligence techniques [31].”
BackgroundTopic Extraction and Interactive Knowledge Graphs for Learning Resources
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“After assigning those main topics to the learning resource we will establish the base for the dynamic interactive knowledge graph that will contain all the learning resources. knowledge graphs from the text in learning resources is another key platform, where we can focus on self-directed learning…”
BackgroundAn Introduction to Model Versioning
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A hybrid fault diagnosis method for mechanical components based on ontology and signal analysis
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“Berners-Lee and Hendler (2001) proposed the concept of semantic web.”
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Mining the bibliome: searching for a needle in a haystack?
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Time-aware domain-based social influence prediction
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An introduction to the Semantic Web for health sciences librarians.
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The 18 benefits of using ecosystem services classification systems
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Metabolomic biomarkers: search, discovery and validation
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When One and One Gives More than Two: Challenges and Opportunities of Integrative Omics
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“, which entities are represented, and which are their relations (Berners-Lee and Hendler, 2001).”
BackgroundyOWL: An ontology-driven knowledge base for yeast biologists
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Linking publication, gene and protein data
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“These are common problems for programmers attempting to mine information available on the internet, not just those working with biological data, and there is growing interest among bioinformaticians in adopting the emerging 'semantic web' technologie”
BackgroundInternet‐Based Integrated Environmental Assessment Using Ontologies to Share Computational Models
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A Semantic Web Management Model for Integrative Biomedical Informatics
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Representation and use of chemistry in the global electronic age
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A model-driven approach to machine learning and software modeling for the IoT
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“0 or the Semantic Web was introduced [3].”
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“Besides commonly used formats for Web content syndication such as RSS and Atom, technologies and formats such as the resource description framework (RDF) may be employed to provide data and leverage the potentially immense power of the Semantic Web [Berners-Lee and Hendler, 2001; Berners-Lee et al., 2001]—a self-descr…”
MethodPhylotastic! Making tree-of-life knowledge accessible, reusable and convenient
Stoltzfus, A., Lapp, H., Matasci, N., Deus, H., Sidlauskas, B. L., Zmasek, C. M., Vaidya, G., Pontelli, E., Cranston, K., Vos, R. A., et al. (2013) · BMC Bioinformatics · doi:10.1186/1471-2105-14-158 · Cited by 36 · see citing works
“Standards and technologies for the semantic web [39] seem well positioned to address the nature of the functional requirements for the tree-store.”
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“In 2001, Tim Berners-Lee and James Hendler sketched how they expect researchers in the future to produce machine-readable descriptions of their experiments and findings, in the form of mark-up of their research papers or as independent representations made public on the web [7].”
Life Sciences and the web: a new era for collaboration
Sagotsky, J., Zhang, L., Wang, Z., Martin, S., & Deisboeck, T. S. (2008) · Molecular Systems Biology · doi:10.1038/msb.2008.39 · Cited by 38 · see citing works
“jpg" NDATA ITEM>]> Introduction Over the last decade, the World Wide Web has forever changed the way people communicate, do business, and retrieve information”
BackgroundOntology-based approach to data exchanges for robot navigation on construction sites
Karimi, S., Iordanova, I., & St-Onge, D. (2021) · Journal of Information Technology in Construction · doi:10.36680/j.itcon.2021.029 · Cited by 37 · see citing works
Informatics in Radiology: Radiology Gamuts Ontology: Differential Diagnosis for the Semantic Web
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More phenomenology in psychiatry? Applied ontology as a method towards integration
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The global environmental agenda urgently needs a semantic web of knowledge
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Research on a configurable method for fault diagnosis knowledge of machine tools and its application
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Progress and Challenges on Entity Alignment of Geographic Knowledge Bases
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The markup is the model: Reasoning about systems biology models in the Semantic Web era
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“In a similar way, the Semantic Web (e.g. Alesso and Smith, 2006; Baker and Cheung, 2007; Berners-Lee and Hendler, 2001; Berners-Lee et al., 2006; Fensel et al., 2003; Stevens et al., 2006; Taylor et al., 2006), will allow the semantic annotation of such XML documents using the Resource Description…”
MethodExpressing High-Level Scientific Claims with Formal Semantics
Bucur, C.-I., Kuhn, T., Ceolin, D., & van Ossenbruggen, J. (2021) · International Conference on Knowledge Capture · doi:10.1145/3460210.3493561 · Cited by 32 · see citing works
Promoting data quality and reuse in archaeology through collaborative identifier practices
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An approach based on the ifcOWL ontology to support indoor navigation
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Assessing scientific collaboration through coauthorship and content sharing
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“Progresses in this field could be made also thanks to the development of the so called semantic web that aims at making information retrieval a simpler operation (Berners-Lee and Hendler 2001; Hendler 2003; Chen et al. 2009).”
BackgroundKeeping pace with the data: 2008 update on the Bioinformatics Links Directory
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OpenKG Chain: A Blockchain Infrastructure for Open Knowledge Graphs
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“Knowledge is acquired through experience or education by perceiving, discovering and learning[1, 2].”
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“By providing these technologies, it is believed that a new generation of the World Wide Web, the Semantic Web, will emerge that can provide searching and matching mechanisms that are more powerful than conventional syntactic search mechanisms (Berners-Lee and Hendler 2001).”
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“While data formats for machine readability, such as semantic web format [4] and ontology annotations [10], enable structured, computational processing of AOP information that can be interoperable with other (meta)data sources, and re-usable or reproducible, human interpretability focuses on…”
OGO: an ontological approach for integrating knowledge about orthology
Miñarro-Giménez, J. A., Madrid, M., & Fernández‐Breis, J. T. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-s10-s13 · Cited by 23 · see citing works
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(Re)Use in Public Scientific Workflow Repositories
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“the Internet was important for advancing science [6].”
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A global resource for computational chemistry
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“…question that arises in this scenario is the need to make the machines capable of reasoning similar to that of humans, resulting in an association with so-called Artificial Intelligence, which the makers of the SW, since the first articles, sought to exclude (Berners-Lee & Hendler, 2001, p. 1023).”
BackgroundContext-aware similarity assessment within semantic space formed in linked data
Zadeh, P. D. H., & Reformat, M. (2012) · Journal of Ambient Intelligence and Humanized Computing · doi:10.1007/s12652-012-0154-7 · Cited by 20 · see citing works
“In order to publish data on the web of LD some principles have to be followed (Berners-Lee and Hendler 2001).”
BackgroundA Graph Analysis of the Linked Data CloudPreprint
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“Similarly, the Semantic Web is a distributed resource identifier repository [5].”
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“They enable automated110 systems to understand the meaning (semantics) and infer additional knowledge from111 published documents and data (Berners-Lee and Hendler, 2001; Shadbolt et al., 2006).112 Essential building blocks for the creation of structured, meaningful web content are113 information…”
BackgroundThe Semantic Web and healthcare consumers: a new challenge and opportunity on the horizon?
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Artificial intelligence for ocean science data integration: current state, gaps, and way forward
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Distributed ontology building as practical work
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Tractable reasoning with vague knowledge using fuzzy $\mathcal{EL}^{++}$
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“Concepts like that of a “near” destination (Berners-Lee and Hendler 2001), a “high Quality” audio system (McGuinness 2003), “many” children, a “faulty” reactor (Horrocks and Sattler 1999), “soon” and many more, require special modeling features.”
Biomedical semantics in the Semantic Web
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“of the potential of these technologies to address the increasing complexity of life sciences information dates back to 2001 [2], just after the completion of the Human Genome Project.”
BackgroundPractical Experiences for the Development of Educational Systems in the Semantic Web
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Drug Cocktail Optimization in Chemotherapy of Cancer
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PharmaTrek: A Semantic Web Explorer for Open Innovation in Multitarget Drug Discovery
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A Semantic Collaboration Method Based on Uniform Knowledge Graph
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“He proposed the concept of semantic web for intelligent information processing and extraction [9].”
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An overview of cardiac systems biology
Shreenivasaiah, P. K., Rho, S., Kim, T.-Y., et al. (2008) · Journal of Molecular and Cellular Cardiology · doi:10.1016/j.yjmcc.2007.12.005 · Cited by 17 · see citing works
Memórias da trajetória do repositório institucional da Universidade Federal do Rio Grande (FURG)
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Gestão editorial do periódico científico AtoZ: novas práticas em informação e conhecimento
de Araújo, P. C., & Nobre, R. L. D. S. (2022) · doi:10.22477/isbn9786588816363.cap15 · Cited by 16 · see citing works
Managing educational resource in medicine: system design and integration
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A novel tool for standardizing clinical data in a semantically rich model
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“…findings of this study are discussed to highlight the key issues limiting the FAIRness and the flawless management of semantic artefacts in the environmental domain, and to provide a glimpse of existing gaps and challenges that prevent the advancements toward the envisioned web of linked data 18 .”
BackgroundPublicações científicas em ecossitemas de inovação
Rode, S. D. M., & da Silva, E. L. (2022) · doi:10.22477/isbn9786588816363.cap5 · Cited by 15 · see citing works
Tesauros de base conceitual: fundamentação teórica e fluxo para planejamento e operacionalização
Sales, L. F., & Costal, M. (2022) · doi:10.22477/isbn9786588816363.cap7 · Cited by 15 · see citing works
FOLIO: plataforma aberta de serviços de biblioteca criada para inovação contínua
Viana, M. M. M. (2022) · doi:10.22477/isbn9786588816363.cap11 · Cited by 15 · see citing works
How the New Web Generations are Changing Library and Information Services
Miranda, G. F., Gualtieri, F., & Coccia, P. (2010) · Medical Reference Services Quarterly · doi:10.1080/02763861003723200 · Cited by 15 · see citing works
Iida, K., Kawaguchi, S., Kobayashi, N., et al. (2011) · Plant and Cell Physiology · doi:10.1093/pcp/pcq202 · Cited by 15 · see citing works
Computational Chemistry Data Management Platform Based on the Semantic Web
Wang, B., Dobosh, P. A., Chalk, S. J., et al. (2016) · The Journal of Physical Chemistry A · doi:10.1021/acs.jpca.6b10489 · Cited by 15 · see citing works
Machine intelligence today: applications, methodology, and technology
Humm, B. G., Bense, H., Fuchs, M., et al. (2021) · Informatik-Spektrum · doi:10.1007/s00287-021-01343-1 · Cited by 15 · see citing works
- Authors
- Berners-Lee, T., & Hendler, J.
- Affiliations
- University of Maryland, College Park (US)
- ORCID
- Hendler, James
- Venue
- Nature
- Published
- 2001-04
- Volume
- 410
- Issue
- 6832
- Pages
- 1023-1024
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W1651004564
- Cited by
- 311
- References
- 0
- Citations by year
- 2026: 2 · 2025: 10 · 2024: 8 · 2023: 6 · 2022: 28 · 2021: 9 · 2020: 17 · 2019: 17 · 2018: 11 · 2017: 18 · 2016: 10 · 2015: 14 · 2014: 14 · 2013: 15 · 2012: 21
- FWCI
- 7.44
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DigitalGeorgetown (Georgetown University Library) (submittedVersion)
- Topics
- Physical Sciences › Computer Science › Artificial Intelligence › Semantic Web and Ontologies
- Physical Sciences › Computer Science › Information Systems › Library Science and Information Systems
- Social Sciences › Arts and Humanities › History and Philosophy of Science › Publishing and Scholarly Communication
- Keywords
- semantic web, scholarly publishing, scientific information, internet revolution
- MeSH terms
- Publishing, Internet
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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