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Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
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“Additionally, ChIP-based proximity ligation assays, such as PLAC-seq67, rely on the use of antibodies to pull down pre-specified regions associated with certain histone marks that can demarcate putative enhancer (H3K27ac) or promoter (H3K4me3) regions.”
From Variant-to-function mapping of late-onset Alzheimer’s disease GWAS signals in human microglial cell models implicates RTFDC1 at the CASS4 locus (2024) · cites this paper as [67]
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Metadata
- Authors
- Fang, R., Yu, M., Li, G., Chee, S., Liu, T., Schmitt, A. D., & Ren, B.
- Affiliations
- University of California San Diego (US)
- Ludwig Cancer Research (US)
- Corresponding author
- Ren, Bing
- Venue
- Cell Research
- Published
- 2016-11-25
- Volume
- 26
- Issue
- 12
- Pages
- 1345-1348
- ISSN
- 1001-0602 (ISSN-L)
- 1748-7838
- PMC
- PMC5143423
- OpenAlex
- W2951184828
- Cited by
- 344
- References
- 23
- Citations by year
- 2026: 27 · 2025: 21 · 2024: 36 · 2023: 43 · 2022: 53 · 2021: 60 · 2020: 44 · 2019: 30 · 2018: 21 · 2017: 6
- FWCI
- 9.88
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Cell Research (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Ludwig Institute for Cancer Research (U54 HG006997)
- National Institutes of Health (GM085764)
- National Human Genome Research Institute (U54HG006997)
- National Institute of General Medical Sciences (P50GM085764, T32GM008666)
- National Institute of Diabetes and Digestive and Kidney Diseases (U54DK107977)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- long-range chromatin interactions, chromatin looping, proximity ligation, ChIA-PET, distal enhancers, transcriptional activation, Hi-C, chromatin conformation, transcription factor binding sites, histone modifications, ChIP-seq, mammalian cells
- MeSH terms
- Mouse Embryonic Stem Cells, Algorithms, Animals, Chromatin, Enhancer Elements, Genetic, Humans, Promoter Regions, Genetic, RNA Polymerase II, Sequence Analysis, DNA, Chromatin Immunoprecipitation, Mice, High-Throughput Nucleotide Sequencing
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