Global distribution and diversity of marine Verrucomicrobia
Open accessAbstract
Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine Microbes as well as 11 coastal samples taken from the California Current. These samples from both the water column and sediments covered a wide range of environmental conditions. Verrucomicrobia were present in 98% of the analyzed samples, and thus appeared nearly ubiquitous in the ocean. Based on the occurrence of amplified 16S ribosomal RNA sequences, Verrucomicrobia constituted on average 2% of the water column and 1.4% of the sediment bacterial communities. The diversity of Verrucomicrobia displayed a biogeography at multiple taxonomic levels and thus, specific lineages appeared to have clear habitat preference. We found that subdivision 1 and 4 generally dominated marine bacterial communities, whereas subdivision 2 was more frequent in low salinity waters. Within the subdivisions, Verrucomicrobia community composition were significantly different in the water column compared with sediment as well as within the water column along gradients of salinity, temperature, nitrate, depth and overall water column depth. Although we still know little about the ecophysiology of Verrucomicrobia lineages, the ubiquity of this phylum suggests that it may be important for the biogeochemical cycle of carbon in the ocean.
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Planctomycetes and Verrucomicrobiae have been found in soil, freshwater and seawater.
“which have been found in soil, freshwater (Australian dam, Hungarian pond) and seawater (the Californian Current) (Fuerst, 1995; Freitas et al., 2012).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp <i>Litopenaeus stylirostris</i> : possible influence of the rearing water and more (2021) · cites this paper as Freitas et al., 2012
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BackgroundResultVerrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan
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Environmental vulnerability of the global ocean epipelagic plankton community interactome
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“Verrucomicrobia lineages are poorly characterized but are ubiquitous in the ocean and may be essential for the biogeochemical cycling of carbon (66).”
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“These patterns have been linked over shorter time scales to environmental variability, including temperature, phosphate and silicate levels (50), and rainfall (25); on longer time scales, day length seemed to explain seasonal variation in a 6-year study (86).”
BackgroundNitrate addition stimulates microbial decomposition of organic matter in salt marsh sediments
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“In contrast, ASVs more abundant in the unamended treatment included orders that are ubiquitous in soil and mangrove sediments (Verrucomicrobiae, Caldithrixales; Freitas et al., 2012; Miroshnichenko, Kolganova, Spring, Chernyh, & Bonch‐ Osmolovskaya, 2010), that can reduce sulfate (Desulfobacterales, Desulfarculales; B…”
BackgroundBacterial Biogeography across the Amazon River-Ocean Continuum
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“Verrucomicrobia are ubiquitous in the world’s oceans, averaging 1.8% of sequences in one global survey, and are more abundant in coastal waters (Freitas et al., 2012).”
BackgroundInfluentialBeall, B., Twiss, M. R., Smith, D. E., Oyserman, B. O., Rozmarynowycz, M. J., Binding, C. E., Bourbonniere, R. A., Bullerjahn, G. S., Palmer, M. E., Reavie, E. D., et al. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.12819 · Cited by 96 · see citing works
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“A complementary approach that has previously been utilized on an ecosystem level [23–27], but rarely utilized in a global phylocentric context, relies on using in silico database mining approaches to examine patterns of distribution of members of a”
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ResultInfluentialEcological patterns and adaptability of bacterial communities in alkaline copper mine drainage
Liu, J., Li, C., Jing, J., Zhao, P., Luo, Z., Cao, M., Ma, Z., Jia, T., & Chai, B. (2018) · Water Research · doi:10.1016/j.watres.2018.01.014 · Cited by 91 · see citing works
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“However, the dominance of Spartobacteria class observed in most terrestrial environments was generally lost in the ocean and marine sediments (Freitas et al. 2012).”
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“, 2000; Janssen, 2006), phylogenetically diverse and widely distributed in water and soil (Freitas et al., 2012; Kindaichi et al., 2016).”
BackgroundBiogeographic partitioning of S outhern O cean microorganisms revealed by metagenomics
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“Verrucomicrobia is commonly found in soil and marine environment (Freitas et al., 2012) as well as gut samples from mammalian (Dubourg et al.”
BackgroundReconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs
Cabello‐Yeves, P. J., Ghai, R., Mehrshad, M., Picazo, A., Camacho, A., & Rodríguez‐Valera, F. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.02131 · Cited by 81 · see citing works
“We have found a relative abundance between 2 and 19% (Supplementary Figure 1), much higher than some values estimated for marine water column and sediments (2 and 1.4%, respectively) (Freitas et al., 2012).”
ResultInfluentialChiang, E., Schmidt, M. L., Berry, M. A., Biddanda, B. A., Burtner, A. M., Johengen, T. H., Palladino, D., & Denef, V. J. (2018) · PLoS ONE · doi:10.1371/journal.pone.0195112 · Cited by 78 · see citing works
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“Verrucomicrobia is a phylum that is widely distributed, but rarely dominant (Freitas et al., 2012; Yilmaz et al., 2016).”
BackgroundMicrobial Community Response to Terrestrially Derived Dissolved Organic Matter in the Coastal Arctic
Sipler, R. E., Kellogg, C. T. E., Connelly, T. L., Roberts, Q. N., Yager, P. L., & Bronk, D. A. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01018 · Cited by 73 · see citing works
“The majority of Verrucomicrobia sequences in our samples belong to subdivision 4, which are observed in surface waters globally (Freitas et al., 2012).”
BackgroundLi, R., Shen, Z., Sun, L., Zhang, R., Fu, L., Deng, X., & Shen, Q. (2016) · Applied Soil Ecology · doi:10.1016/j.apsoil.2016.01.004 · Cited by 72 · see citing works
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Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic)
Jacob, M., Soltwedel, T., Boëtius, A., & Ramette, A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0072779 · Cited by 64 · see citing works
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“The bacterial phylum Verrucomicrobia is found in almost all marine environments and plays an important role in global carbon cycling and degrading various polysaccharides [73, 74].”
BackgroundSerra, V., Gammuto, L., Nitla, V., Castelli, M., Lanzoni, O., Sassera, D., Bandi, C., Sandeep, B. V., Verni, F., Modeo, L., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-76348-z · Cited by 59 · see citing works
Bacterioplankton communities in a high-altitude freshwater wetland
Zhang, J., Zhang, X., Liu, Y., Xie, S., & Liu, Y. (2013) · Annals of Microbiology · doi:10.1007/s13213-013-0785-8 · Cited by 60 · see citing works
“Verrucomicrobia is a universally distributed phylum and can be present in terrestrial and aquatic habitats (Arnds et al. 2010; Freitas et al. 2012; Parveen et al. 2013) and manmade bioreactors (Feng et al.”
Reverter, M., Sasal, P., Tapissier‐Bontemps, N., Lecchini, D., & Suzuki, M. T. (2017) · FEMS Microbiology Ecology · doi:10.1093/femsec/fix051 · Cited by 58 · see citing works
“Ver-rucomicrobia are ubiquitous (although rarely in very high proportions) in the marine environment, both in the water column and in sediment, but little is known of the functional role they might play in association with organisms such as fish (Freitas et al .”
BackgroundFogarty, C., Burgess, C. M., Cotter, P. D., Cabrera‐Rubio, R., Whyte, P., Smyth, C., & Bolton, D. (2019) · Journal of Applied Microbiology · doi:10.1111/jam.14291 · Cited by 59 · see citing works
“2016) even though these bacteria are common in soil, fresh water and the marine environment (Freitas et al. 2012).”
BackgroundResultExploring biogeographic patterns of bacterioplankton communities across global estuaries
Ghosh, A., & Bhadury, P. (2018) · MicrobiologyOpen · doi:10.1002/mbo3.741 · Cited by 53 · see citing works
“For the first time, we show that Verrucomicrobia sequences are ubiquitous in global estuarine water given that they are known to be widely present in soil environment and also have reported from other coastal ecosys‐ tems but not from estuaries (Freitas et al., 2012).”
BackgroundInfluence of seawater intrusion on microbial communities in groundwater
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Marlow, J. J., Steele, J. A., Case, D. H., Connon, S. A., Levin, L. A., & Orphan, V. J. (2014) · Frontiers in Marine Science · doi:10.3389/fmars.2014.00044 · Cited by 53 · see citing works
“In addition, an indirect stimulation of heterotrophy (Freitas et al., 2012) associated with the high microbial abundances linked to active carbonates could sustain members of this phylum.”
BackgroundAlterations of the Mice Gut Microbiome via Schistosoma japonicum Ova-Induced Granuloma
Zhao, Y., Yang, S., Li, B., Li, W., Wang, J., Chen, Z., Yang, H. J., Tan, H., & Li, J. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00352 · Cited by 53 · see citing works
Lin, J. Y., Russell, J. A., Sanders, J. G., & Wertz, J. T. (2016) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.001141 · Cited by 51 · see citing works
“…six subphyla (Hedlund, 2010; Hugenholtz et al., 1998; Vandekerckhove et al., 2000; Yoon, 2011) and are abundant in many habitats, including marine (Freitas et al., 2012), soil (Bergmann et al., 2011; Fierer et al., 2013; Lee et al., 1996; O’Farrell & Janssen, 1999) and animal gut environments…”
BackgroundBalmonte, J. P., Arnosti, C., Underwood, S., McKee, B. A., & Teske, A. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01441 · Cited by 50 · see citing works
“…represented a different set of lineages: the Chthoniobacter group in Subdivision 2, which is commonly dominated by soil bacteria (Sangwan et al., 2005; Freitas et al., 2012), and the vadin HA64 (Opitutaceae) lineage of Subdivision 4, consisting of freshwater clones (Burkert et al., 2003; Figure 6).”
BackgroundYang, S., Kang, I., & Cho, J. (2015) · Microbial Ecology · doi:10.1007/s00248-015-0695-3 · Cited by 49 · see citing works
“Considering that Verrucomicrobia represents an average of <2 % of marine water column bacterial assemblages [74], and occupied ∼2.”
BackgroundInfluentialSpatial and Temporal Microbial Patterns in a Tropical Macrotidal Estuary Subject to Urbanization
Kaestli, M., Skillington, A. J., Kennedy, K., Majid, M., Williams, D., McGuinness, K. A., Munksgaard, N. C., & Gibb, K. S. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01313 · Cited by 49 · see citing works
“We found that Verrucomicrobia, abundant in marine environments (Freitas et al., 2012), were more abundant during spring tides, which suggests increased exchange with oceanic water.”
BackgroundLuo, W., Zhao, X., Xu, H., Bao, X., Liu, X., Chang, Y., & Ding, J. (2018) · Aquaculture Research · doi:10.1111/are.13654 · Cited by 49 · see citing works
Delpech, L.-M., Vonnahme, T. R., McGovern, M., Gradinger, R., Præbel, K., & Poste, A. E. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.614634 · Cited by 48 · see citing works
Regulation of CTnDOT Conjugative Transfer Is a Complex and Highly Coordinated Series of Events
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Yang, T., Speare, K. E., McKay, L. J., MacGregor, B. J., Joye, S. B., & Teske, A. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01384 · Cited by 45 · see citing works
Weber, L., González‐Díaz, P., Armenteros, M., Ferrer, V. M., Bretos, F., Bartels, E., Santoro, A. E., & Apprill, A. M. (2019) · Environmental Microbiology · doi:10.1111/1462-2920.14870 · Cited by 44 · see citing works
“That being said, Verrumicrobia are also detected ubiquitously in seawater and at high relative abundances in coastal marine environments (Freitas et al., 2012).”
BackgroundEffects of Actinomycete Secondary Metabolites on Sediment Microbial Communities
Patin, N., Schorn, M., Aguinaldo, K., Lincecum, T. L., Moore, B. S., & Jensen, P. R. (2016) · Applied and Environmental Microbiology · doi:10.1128/aem.02676-16 · Cited by 42 · see citing works
“In the marine environment, they are found in the water column and sediments (68–70), and different lineages appear to have different habitat preferences (70).”
BackgroundJain, A., Krishnan, K. P., Singh, A., Thomas, F. A., Begum, N., Tiwari, M., Bhaskar, P. V., & Gopinath, A. (2019) · Ecological Indicators · doi:10.1016/j.ecolind.2019.03.015 · Cited by 42 · see citing works
Dynamics of Microbial Community Structure and Ecological Functions in Estuarine Intertidal Sediments
Yi, J., Lo, L. S. H., & Cheng, J. (2020) · Frontiers in Marine Science · doi:10.3389/fmars.2020.585970 · Cited by 41 · see citing works
Seasonal shifts of microbial methane oxidation in Arctic shelf waters above gas seeps
Gründger, F., Probandt, D., Knittel, K., Carrier, V., Kalenitchenko, D., Silyakova, A., Serov, P., Ferré, B., Svenning, M. M., & Niemann, H. (2021) · Limnology and Oceanography · doi:10.1002/lno.11731 · Cited by 42 · see citing works
“Members of this phylum have been found globally in a variety of aerobic and anaerobic marine environments (Freitas et al. 2012), but only a few species were isolated and characterized so far, and relatively little knowledge exists on the metabolic capabilities of Verrucomicrobia.”
BackgroundBergen, B., Herlemann, D. P. R., Labrenz, M., & Jürgens, K. (2014) · Environmental Microbiology Reports · doi:10.1111/1758-2229.12178 · Cited by 39 · see citing works
“Although they are particularly abundant in soils (Buckley and Schmidt, 2001), they also inhabit freshwater and marine water columns as well as sediments (Arnds et al., 2010; Freitas et al., 2012).”
BackgroundDiner, R. E., Kaul, D., Rabines, A. J., Zheng, H., Steele, J. A., Griffith, J. F., & Allen, A. E. (2021) · mSystems · doi:10.1128/msystems.00571-21 · Cited by 37 · see citing works
“many sample types and nearly ubiquitous in the marine environment (27) (Fig.”
BackgroundYan, S., Ding, N., Yao, X., Song, J., He, W., Rehman, F., & Guo, J. (2023) · Chemosphere · doi:10.1016/j.chemosphere.2023.137793 · Cited by 36 · see citing works
Santi, C. D., Willassen, N. P., & Williamson, A. (2016) · PLoS ONE · doi:10.1371/journal.pone.0159345 · Cited by 35 · see citing works
“The phyla Planctomycetaceae, Bacteroidetes and Verrucomicrobia, which contain CE15s that are the most similar to MZ0003, include species that are known to use carbohydrates as energy sources, are widespread in the marine environment and have been implicated in carbohydrate degradation in marine Arctic environments [11…”
BackgroundSizikov, S., Burgsdorf, I., Handley, K. M., Lahyani, M., Haber, M., & Steindler, L. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15210 · Cited by 35 · see citing works
Yan, Y., Yang, H., Tang, L., Li, J., Mao, Y., & Mo, Z. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01666 · Cited by 34 · see citing works
“The majority of these bacterial members have also been discovered in the bacterioplankton of coastal seawater (Stingl et al., 2007; Hwang et al., 2009; Freitas et al., 2012; Giebel et al., 2013; Shan et al., 2015; Teeling et al., 2016), and are mainly involved in the nutrient cycles rather than pathogenicity, such as…”
BackgroundPost-digestate composting shifts microbial composition and degrades antimicrobial resistance genes
Gurmessa, B., Milanović, V., Pedretti, E. F., Corti, G., Ashworth, A. J., Aquilanti, L., Ferrocino, I., Corvaglia, M. R., & Cocco, S. (2021) · Bioresource Technology · doi:10.1016/j.biortech.2021.125662 · Cited by 34 · see citing works
“This phylum is ubiquitous in soils, but its habitat is influenced by temperature, pH, and chemical composition (Freitas et al., 2012).”
Betiku, O. C., Sarjeant, K. C., Ngatia, L. W., Aghimien, M. O., Odewumi, C. O., & Latinwo, L. M. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.144773 · Cited by 33 · see citing works
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Fiard, M., Cuny, P., Sylvi, L., Hubas, C., Jézéquel, R., Lamy, D., Walcker, R., Houssainy, A. E., Heimbürger-Boavida, L., Robinet, T., et al. (2021) · Science of the Total Environment · doi:10.1016/j.scitotenv.2021.150667 · Cited by 21 · see citing works
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Sponge-microbe partnerships are stable under eutrophication pressure from mariculture
Baquiran, J. I., & Conaco, C. (2018) · Marine Pollution Bulletin · doi:10.1016/j.marpolbul.2018.09.011 · Cited by 30 · see citing works
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“For example, Verrucomicrobia subdivision 1 appears to be very common in the ocean [27] and to a lesser extent in lakes [5].”
BackgroundTanaka, Y., Matsuzawa, H., Tamaki, H., Tagawa, M., Toyama, T., Kamagata, Y., & Mori, K. (2017) · Microbes and Environments · doi:10.1264/jsme2.me17027 · Cited by 29 · see citing works
Lee, H. B., Jeong, D. H., Cho, B. C., & Park, J. S. (2023) · Frontiers in Marine Science · doi:10.3389/fmars.2023.1199116 · Cited by 28 · see citing works
“Takahashi et al. (2014) showed that the PRK341F/PRK806R primer set had a lower taxonomic resolution for members of the classes Verrucomicrobiae and Opitutae , which were widely distributed but at low abundance in marine environments (Freitas et al., 2012).”
BackgroundArandia‐Gorostidi, N., Krabberød, A. K., Logares, R., Deutschmann, I. M., Scharek, R., Morán, X. A. G., González, F., & Alonso‐Sáez, L. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.901201 · Cited by 27 · see citing works
Ferrera, I., Auladell, A., Balagué, V., Reñé, A., Garcés, E., Massana, R., & Gasol, J. M. (2024) · Environmental Microbiology Reports · doi:10.1111/1758-2229.13299 · Cited by 25 · see citing works
“These findings are consistent with previous studies (Freitas et al., 2012; Ganesh et al., 2014; L (cid:1) opez-Pérez et al., 2016; Mestre, Borrull et al., 2017; Mestre, Ferrera et al., 2017; Yeh & Fuhrman, 2022a, 2022b).”
Zhang, X., Tao, Y., Hu, J., Liu, G., Spanjers, H., & van Lier, J. B. (2016) · Bioresource Technology · doi:10.1016/j.biortech.2016.04.120 · Cited by 25 · see citing works
“Verrucomicrobia is ubiquitous in the ocean and may play an important role in the carbon cycle in the ocean (Freitas et al., 2012).”
BackgroundSpatial variation of bacterial and fungal communities of estuarine seagrass leaf microbiomes
Trevathan‐Tackett, S. M., Allnutt, T., Sherman, C. D. H., Richardson, M. F., Crowley, T. M., & Macreadie, P. I. (2020) · Aquatic Microbial Ecology · doi:10.3354/ame01926 · Cited by 25 · see citing works
Isanapong, J., Hambright, W. S., Willis, A. G., Boonmee, A., Callister, S., Burnum-Johnson, K., Paša‐Tolić, L., Nicora, C., Wertz, J. T., Schmidt, T. M., et al. (2013) · The ISME Journal · doi:10.1038/ismej.2013.74 · Cited by 24 · see citing works
“…a renewed interest in the members of the phylum Verrucomicrobia has arisen because of their potential role in complex polysaccharide degradation (Flint et al., 2012; Martinez-Garcia et al., 2012) and importance in the biogeochemical cycling of carbon (Bergmann et al., 2011; Freitas et al., 2012).”
BackgroundGiraud, C., Callac, N., Beauvais, M., Mailliez, J.-R., Ansquer, D., Selmaoui-Folcher, N., Pham, D., Wabete, N., & Boulo, V. (2021) · PeerJ · doi:10.7717/peerj.12241 · Cited by 23 · see citing works
“The M3 and M4 secondary reservoirs respectively displayed important abundances of Planctomycetes and Verrucomicrobiae which have been found in soil, freshwater (Australian dam, Hungarian pond) and seawater (the Californian Current) ( Fuerst, 1995; Freitas et al., 2012).”
Rhodopsin-mediated nutrient uptake by cultivated photoheterotrophic Verrucomicrobiota
Bar‐Shalom, R., Rozenberg, A., Lahyani, M., Hassanzadeh, B., Sahoo, G., Haber, M., Burgsdorf, I., Tang, X., Squatrito, V., Gómez‐Consarnau, L., et al. (2023) · The ISME Journal · doi:10.1038/s41396-023-01412-1 · Cited by 23 · see citing works
“Verrucomicrobiota are nearly ubiquitous in the marine environment, constituting on average 2% of microbial communities [26].”
Du, S., Chen, W., Yao, Z., Huang, X., Chen, C., Guo, H., & Zhang, D. (2021) · Animal Microbiome · doi:10.1186/s42523-021-00152-x · Cited by 22 · see citing works
“Certain planktonic Verrucomicrobiaceae phylotypes have the potential to be active polysaccharide degraders [55, 56], promoting food utilization to achieve enhanced growth performance.”
BackgroundBergen, B., Herlemann, D. P. R., & Jürgens, K. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00621 · Cited by 22 · see citing works
“Verrucomicrobia subdivision 1 is frequently found in marine bacterial communities (Bano and Hollibaugh, 2002; Freitas et al., 2012).”
BackgroundBobrova, O., Kristoffersen, J. B., Oulas, A., & Ivanytsia, V. (2016) · Acta Biochimica Polonica · doi:10.18388/abp.2015_1145 · Cited by 21 · see citing works
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“Verrucomicrobia is widespread in marine environments [41]; however, our data in this study determined its low abundance in fishes with both freshwater and marine habitats as previously reported [31] and indicated a wider distribution.”
ResultCapri, F. C., Prazzi, E., Casamento, G., Gambino, D., Cassata, G., & Alduina, R. (2023) · Microbial Ecology · doi:10.1007/s00248-023-02197-8 · Cited by 21 · see citing works
“Therefore, our hypothesis is that possible municipal wastewater could have contaminated nest 1, favoring the proliferation of Firmicutes and Bacteroidetes and disfavoring the normal proliferation of Actinobacteria and Verrucomicrobia, bacterial phyla typical of the sandy environment [50].”
BackgroundTales from a thousand and one phages
Rodríguez‐Valera, F., Mizuno, C. M., & Ghai, R. (2014) · Bacteriophage · doi:10.4161/bact.28265 · Cited by 21 · see citing works
Lam, B. R., Rowe, A. R., & Nealson, K. H. (2018) · Environmental Microbiology · doi:10.1111/1462-2920.14275 · Cited by 21 · see citing works
Decade‐scale stability and change in a marine bivalve microbiome
Neu, A. T., Hughes, I. V., Allen, E. E., & Roy, K. (2021) · Molecular Ecology · doi:10.1111/mec.15796 · Cited by 21 · see citing works
Lu, J., Mu, X., Zhang, S., Song, Y., Ma, Y., Luo, M., & Duan, R. (2023) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2023.166710 · Cited by 20 · see citing works
Extreme storms cause rapid but short‐lived shifts in nearshore subtropical bacterial communities
Ares, A., Brisbin, M. M., Sato, K. N., Martín, J. P., Iinuma, Y., & Mitarai, S. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15178 · Cited by 20 · see citing works
- Authors
- Freitas, S., Hatosy, S., Fuhrman, J. A., Huse, S. M., Mark Welch, D. B., Sogin, M. L., & Martiny, A. C.
- Affiliations
- University of California, Irvine (US)
- University of Southern California (US)
- Marine Biological Laboratory (US)
- Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory , Woods Hole, MA , USA
- Corresponding author
- Martiny, Adam C
- Venue
- The ISME Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-02-09
- Volume
- 6
- Issue
- 8
- Pages
- 1499-1505
- ISSN
- 1751-7362 (ISSN-L)
- 1751-7370
- PMC
- PMC3400412
- OpenAlex
- W2152216029
- Cited by
- 236
- References
- 38
- Citations by year
- 2026: 15 · 2025: 21 · 2024: 26 · 2023: 17 · 2022: 18 · 2021: 21 · 2020: 17 · 2019: 17 · 2018: 15 · 2017: 17 · 2016: 21 · 2015: 10 · 2014: 8 · 2013: 9 · 2012: 4
- FWCI
- 8.79
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- The ISME Journal (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community) (submittedVersion)
- Funders
- National Science Foundation (0928544, 1046297)
- Alfred P. Sloan Foundation
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- Verrucomicrobia, marine bacteria, bacterial biogeography, marine microbial communities, marine sediment, water column, 16S rRNA, bacterial diversity, salinity gradient, carbon cycle, California Current
- MeSH terms
- Nitrates, Pacific Ocean, RNA, Ribosomal, 16S, Temperature, Water Microbiology, Ecosystem, Geologic Sediments, Biodiversity, Salinity, Verrucomicrobia
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