CRYPTOCHROMES promote daily protein homeostasis
Open accessPublished version of a preprint
Abstract
Abstract The daily organisation of most mammalian cellular functions is attributed to circadian regulation of clock-controlled protein expression, driven by daily cycles of CRYPTOCHROME-dependent transcriptional feedback repression. To test this, we compared the circadian proteome and phosphoproteome of wild type and CRY-deficient fibroblast cells. Strikingly, CRY-deficient cells showed a two-fold increase in circadian-regulated proteins, phosphopeptides, and K + transport. This was accompanied by extensive remodelling of the cellular proteome overall, including reduced phosphatase and proteasome subunit expression. These adaptations rendered CRY-deficient cells more sensitive to stress, which may account for their reduced circadian robustness and contribute to the wide-ranging phenotypes of CRY-deficient mice. We suggest that CRY ultimately functions to suppress, rather than generate, daily rhythms in cellular protein abundance, thereby maintaining protein and osmotic homeostasis.
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Cites
Global quantification of mammalian gene expression control
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566 · cited 1× · see citing works
“…consensus that variation in cellular mRNA abundance is poorly predictive of variation in protein abundance (Reddy et al , 2006; Deery et al , 2009; Schwanh € ausser et al , 2011; Vogel & Marcotte, 2012; Mauvoisin et al , 2014; Robles et al , 2014; Stitt & Gibon, 2014; Liu et al , 2016b; Fortelny…”
The Biology of Proteostasis in Aging and Disease
Labbadia, J., & Morimoto, R. I. (2015) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060614-033955 · Cited by 1,472 · see citing works
Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
Koike, N., Yoo, S.-H., Huang, H.-C., Kumar, V., Lee, C., Kim, T.-K., & Takahashi, J. S. (2012) · Science · doi:10.1126/science.1226339 · Cited by 1,464 · see citing works
Control of Stochasticity in Eukaryotic Gene Expression
Raser, J. M., & O'Shea, E. K. (2004) · Science · doi:10.1126/science.1098641 · Cited by 1,425 · see citing works
mRNAs, proteins and the emerging principles of gene expression control
Buccitelli, C., & Selbach, M. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-0258-4 · Cited by 1,243 · see citing works
Discovering motifs in ranked lists of DNA sequences
Eden, E., Lipson, D., Yogev, S., & Yakhini, Z. (2007) · PLoS Computational Biology · doi:10.1371/journal.pcbi.0030039 · Cited by 696 · see citing works
Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis
Zhang, E. E., Liu, Y., Dentin, R., Pongsawakul, P. Y., Liu, A. C., Hirota, T., Nusinow, D. A., Sun, X., Landais, S., Kodama, Y., et al. (2010) · Nature Medicine · doi:10.1038/nm.2214 · Cited by 567 · see citing works
Rocca, J. D., Hall, E. K., Lennon, J. T., Evans, S. E., Waldrop, M. P., Cotner, J. B., Nemergut, D. R., Graham, E. B., & Wallenstein, M. D. (2015) · The ISME Journal · doi:10.1038/ismej.2014.252 · Cited by 398 · see citing works
Mauvoisin, D., Wang, J., Jouffe, C., Martin, E., Atger, F., Waridel, P., Quadroni, M., Gachon, F., & Naef, F. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314066111 · Cited by 329 · see citing works
Disrupting Circadian Homeostasis of Sympathetic Signaling Promotes Tumor Development in Mice
Lee, S., Donehower, L. A., Herron, A. J., Moore, D. D., & Fu, L. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010995 · Cited by 286 · cited 1× · see citing works
“…exhibited by CKO mice, including impaired body growth (Masuki et al , 2005; Bur et al , 2009), increased susceptibility to multiple cancers (Lee et al , 2010; Kettner et al , 2016; Mteyrek et al , 2017; Chan & Lamia, 2020), chronic inflammation (Narasimamurthy et al , 2012; Hand et al ,…”
MECP2 disorders: from the clinic to mice and back
Lombardi, L. M., Baker, S. A., & Zoghbi, H. Y. (2015) · Journal of Clinical Investigation · doi:10.1172/jci78167 · Cited by 221 · see citing works
Quality Control of Orphaned Proteins
Juszkiewicz, S., & Hegde, R. S. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.07.001 · Cited by 165 · see citing works
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- Authors
- Wong, D. C. S., Seinkmane, E., Zeng, A., Stangherlin, A., Rzechorzek, N. M., Beale, A. D., Day, J., Reed, M., Peak‐Chew, S. Y., Styles, C. T., Edgar, R. S., Putker, M., & O’Neill, J. S.
- Affiliations
- MRC Laboratory of Molecular Biology (GB)
- University of Cambridge (GB)
- Imperial College London (GB)
- ORCID
- Venue
- The EMBO Journal
- Published
- 2021-11-29
- Volume
- 41
- Issue
- 1
- Pages
- e108883-e108883
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC8724739
- OpenAlex
- W3214833691
- Cited by
- 30
- References
- 12
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 6 · 2023: 7 · 2021: 8 · 2020: 1
- FWCI
- 2.75
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- The EMBO Journal (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, cc-by)
- Spiral (Imperial College London) (submittedVersion, cc-by)
- Apollo (University of Cambridge) (submittedVersion, cc-by)
- Apollo
- Funders
- UKRI | Medical Research Council (MC_UP_1201/4, MR/S022023/1)
- KWF Kankerbestrijding (BUIT‐2014‐6637)
- EMBO (ALTF‐654‐2014)
- The Wellcome Trust (093734/Z/10/Z)
- Topics
- Life Sciences › Neuroscience › Endocrine and Autonomic Systems › Circadian rhythm and melatonin
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Light effects on plants
- Life Sciences › Neuroscience › Cognitive Neuroscience › Sleep and Wakefulness Research
- Keywords
- cryptochrome, circadian clock, proteostasis, osmotic balance, proteotoxic stress, phosphopeptides, potassium homeostasis
- MeSH terms
- Proteostasis, Animals, Circadian Rhythm, Phosphoproteins, Stress, Physiological, Time Factors, Reproducibility of Results, Ion Transport, Proteome, Proteomics, Proteasome Endopeptidase Complex, Mice, Cryptochromes
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