Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection

Baba, Tomoya, Ara, Takeshi, Hasegawa, Miki, Takai, Yuki, Okumura, Yoshiko, Baba, Miki, Datsenko, Kirill A, Tomita, Masaru +2 more·2006·Molecular Systems Biology

Cited by (1,043)

Items 601–700 of 1,043

  1. Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription
    Richard Janissen, Mathia M.A. Arens, Natalia N. Vtyurina, Zaïda Rivai, Nicholas D. Sunday, Behrouz Eslami-Mossallam, Alexey A. Gritsenko, Liedewij Laan, Dick de Ridder, Irina Artsimovitch et al. · 2018 · Cell
  2. Pull in and Push Out: Mechanisms of Horizontal Gene Transfer in Bacteria
    Dongchang Sun · 2018 · Frontiers in Microbiology
  3. The structure of the antimicrobial human cathelicidin LL-37 shows oligomerization and channel formation in the presence of membrane mimics
    Enea Sancho‐Vaello, David Gil‐Carton, Patrice François, Eve-Julie Bonetti, Mohamed Kreir, Karunakar Reddy Pothula, Ulrich Kleinekathöfer, Kornelius Zeth · 2020 · Scientific Reports
  4. Mismatch-CRISPRi Reveals the Co-varying Expression-Fitness Relationships of Essential Genes in Escherichia coli and Bacillus subtilis
    John S. Hawkins, Melanie R. Silvis, Byoung‐Mo Koo, Jason M. Peters, Hendrik Osadnik, Marco Jost, Cameron C. Hearne, Jonathan S. Weissman, Horia Todor, Carol A. Gross · 2020 · Cell Systems
  5. The impact of genetic diversity on gene essentiality within the Escherichia coli species
    François Rousset, Jose Cabezas-Caballero, Florence Piastra-Facon, Jesús Fernández-Rodríguez, Olivier Clermont, Érick Denamur, Eduardo P. C. Rocha, David Bikard · 2021 · Nature Microbiology
  6. The protein network of bacterial motility
    Seesandra Venkatappa Rajagopala, Bjoern Titz, Johannes B. Goll, Jodi R. Parrish, Katrin Wohlbold, Matthew T. McKevitt, Timothy Gerald Palzkill, Hirotada Mori, Russell L. Finley, Peter Uetz · 2007 · Molecular Systems Biology
  7. Investigating the predictability of essential genes across distantly related organisms using an integrative approach
    Jingyuan Deng, Lei Deng, Shengchang Su, Minlu Zhang, X. Sheldon Lin, Wei Lan, Ali A. Minai, Daniel J. Hassett, Long Jason Lu · 2010 · Nucleic Acids Research
  8. Indole cell signaling occurs primarily at low temperatures in Escherichia coli
    Jintae Lee, Xue‐Song Zhang, Manjunath Hegde, William E. Bentley, Arul Jayaraman, Thomas Keith Wood · 2008 · The ISME Journal
  9. A unified design space of synthetic stripe-forming networks
    Yolanda Schaerli, Andreea Munteanu, Magüi Gili, James Cotterell, James A. Sharpe, Mark Isalan · 2014 · Nature Communications
  10. Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes
    Henri Grosjean, Marc Breton, Pascal Sirand‐Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy‐Lagard et al. · 2014 · PLoS Genetics
  11. NlpI‐mediated modulation of outer membrane vesicle production through peptidoglycan dynamics in Escherichia coli
    Carmen Schwechheimer, Daniel L. Rodriguez, Meta J. Kuehn · 2015 · MicrobiologyOpen
  12. Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks
    João F. Matias Rodrigues, Andreas Wagner · 2009 · PLoS Computational Biology
  13. Reconfiguring the Quorum-Sensing Regulator SdiA ofEscherichia coliTo Control Biofilm Formation via Indole andN-Acylhomoserine Lactones
    Jintae Lee, Toshinari Maeda, Seok Hoon Hong, Thomas Keith Wood · 2009 · Applied and Environmental Microbiology
  14. Polysaccharide Capsule and Sialic Acid-Mediated Regulation Promote Biofilm-Like Intracellular Bacterial Communities during Cystitis
    Gregory G. Anderson, Carlos Goller, Sheryl S. Justice, Scott J. Hultgren, Patrick Casey Seed · 2010 · Infection and Immunity
  15. Optimality and sub-optimality in a bacterial growth law
    Benjamin D. Towbin, Yael Korem Kohanim, Anat Bren, Shany Doron, Rotem Sorek, Uri S. Alon · 2017 · Nature Communications
  16. Improving formaldehyde consumption drives methanol assimilation in engineered E. coli
    Benjamin M. Woolston, Jason R. King, Michael Reiter, Bob Van Hove, Gregory N Stephanopoulos · 2018 · Nature Communications
  17. Escherichia coli can survive stress by noisy growth modulation
    Om Patange, Christian Schwall, Matt Jones, Casandra E. Villava, Douglas A. Griffith, Andrew Phillips, James C W Locke · 2018 · Nature Communications
  18. Engineered CRISPRa enables programmable eukaryote-like gene activation in bacteria
    Yang Liu, Xinyi Wan, Baojun Wang · 2019 · Nature Communications
  19. Current Status and Applications of Adaptive Laboratory Evolution in Industrial Microorganisms
    SuRin Lee, Pil Kim · 2020 · Journal of Microbiology and Biotechnology
  20. Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli
    Avi I. Flamholz, Eli J. Dugan, Cecilia Blikstad, Shmuel Gleizer, Roee Ben-Nissan, Shira Amram, Niv Antonovsky, Sumedha Ravishankar, Εlad Noor, Arren Bar‐Even et al. · 2020 · eLife
  21. Induction and Function of the Phage Shock Protein Extracytoplasmic Stress Response in Escherichia coli
    Goran Jovanović, Louise J. Lloyd, Michael P. H. Stumpf, Antony J. Mayhew, Martin Buck · 2006 · Journal of Biological Chemistry
  22. Escherichia coli HdeB Is an Acid Stress Chaperone
    Renée Kern, Abderrahim Malki, Jad Abdallah, Jihen Tagourti, Gilbert Richarme · 2006 · Journal of Bacteriology
  23. Aerial Exposure to the Bacterial Volatile Compound Trimethylamine Modifies Antibiotic Resistance of Physically Separated Bacteria by Raising Culture Medium pH
    Sylvie Létoffé, Bianca Audrain, Steve P. Bernier, Muriel Delepierre, Jean‐Marc Ghigo · 2014 · mBio
  24. An Epigenetic Switch Involving Overlapping Fur and DNA Methylation Optimizes Expression of a Type VI Secretion Gene Cluster
    Yannick R. Brunet, Christophe Sébastien Bernard, Marthe Gavioli, Roland Lloubès, Eric Cascalès · 2011 · PLoS Genetics
  25. Pyrimidine homeostasis is accomplished by directed overflow metabolism
    Marshall Louis Reaves, Brian D. Young, Aaron M. Hosios, Yi-Fan Xu, Joshua D. Rabinowitz · 2013 · Nature
  26. Establishment of a Method To Rapidly Assay Bacterial Persister Metabolism
    Mehmet A. Orman, Mark P. Brynildsen · 2013 · Antimicrobial Agents and Chemotherapy
  27. Environmental Dependence of Stationary-Phase Metabolism in Bacillus subtilis and Escherichia coli
    Victor Chubukov, Uwe Sauer · 2014 · Applied and Environmental Microbiology
  28. Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics
    Aarash Bordbar, James T. Yurkovich, Giuseppe Paglia, Óttar Rolfsson, Ólafur E. Sigurjónsson, Bernhard Ørn Palsson · 2017 · Scientific Reports
  29. Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
    Toon Swings, Bram Van den Bergh, Sander Wuyts, Eline Oeyen, Karin Voordeckers, Kevin J. Verstrepen, Maarten Fauvart, Natalie Verstraeten, Jan Jacques Michiels · 2017 · eLife
  30. Multiplexed gene synthesis in emulsions for exploring protein functional landscapes
    Calin Plesa, Angus M. Sidore, Nathan B. Lubock, Di Zhang, Sriram Kosuri · 2018 · Science
  31. Mutual potentiation drives synergy between trimethoprim and sulfamethoxazole
    Yusuke Minato, Surendra Dawadi, Shannon Lynn Kordus, Abiram Sivanandam, Courtney C. Aldrich, Anthony D. Baughn · 2018 · Nature Communications
  32. The Pseudomonas aeruginosa T6SS Delivers a Periplasmic Toxin that Disrupts Bacterial Cell Morphology
    Thomas E. Wood, Sophie A. Howard, Andreas Förster, Laura M. Nolan, Eleni Manoli, Nathan P. Bullen, Hamish C. L. Yau, Abderrahman Hachani, Richard D. Hayward, John C. C. Whitney et al. · 2019 · Cell Reports
  33. Envelope stress responses defend against type six secretion system attacks independently of immunity proteins
    Steven J. Hersch, Nobuhiko Watanabe, María Silvina Stietz, Kevin Manera, Fatima Kamal, Brianne J. Burkinshaw, Linh Lam, Alexander Pun, Meixin Li, Alexei V. Savchenko et al. · 2020 · Nature Microbiology
  34. Mass Spectrometric Identification and Characterization of RNA‐Modifying Enzymes
    Tsutomu Suzuki, Yoshiho Ikeuchi, Akiko Noma, Takeo Suzuki, Yuriko Sakaguchi · 2007 · Methods in enzymology on CD-ROM/Methods in enzymology
  35. Production of Secretory and Extracellular N-Linked Glycoproteins inEscherichia coli
    Adam C. Fisher, Charles H. Haitjema, Cassandra Guarino, Eda Çelik, Christine E. Endicott, Craig A. Reading, Judith H. Merritt, A. Celeste Ptak, Sheng Zhang, Matthew P. DeLisa · 2010 · Applied and Environmental Microbiology
  36. Reconstruction of xylose utilization pathway and regulons in Firmicutes
    Yang Gu, Yi Ming Ding, Cong Ren, Zhe Sun, Dmitry A. Rodionov, Weiwen Zhang, Sheng-Chih Yang, Chenhui Yang, Weihong Jiang · 2010 · BMC Genomics
  37. Dissecting specific and global transcriptional regulation of bacterial gene expression
    Luca Gerosa, Karl Kochanowski, Matthias Heinemann, Uwe Sauer · 2013 · Molecular Systems Biology
  38. The silver cation (Ag+): antistaphylococcal activity, mode of action and resistance studies
    Christopher P. Randall, Linda Boniface Oyama, Julieanne M. Bostock, I. Chopra, Alex J. O’Neill · 2012 · Journal of Antimicrobial Chemotherapy
  39. Solving the Antibiotic Crisis
    Gerard D. Wright · 2015 · ACS Infectious Diseases
  40. Slower growth of Escherichia coli leads to longer survival in carbon starvation due to a decrease in the maintenance rate
    Elena Biselli, Severin Josef Schink, Ulrich Gerland · 2020 · Molecular Systems Biology
  41. Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism
    Peter Spanogiannopoulos, Than S. Kyaw, Ben G. H. Guthrie, Patrick H. Bradley, Joyce V. Lee, Jonathan Melamed, Ysabella Noelle Amora Malig, Kathy N. Lam, Daryll Gempis, Moriah Sandy et al. · 2022 · Nature Microbiology
  42. The pan-genome: towards a knowledge-based discovery of novel targets for vaccines and antibacterials
    Alessandro Muzzi, Vega Masignani, Rino Rappuoli · 2007 · Drug Discovery Today
  43. Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV.
    Xindan Wang, R. Reyes-Lamothe, D. Sherratt · 2008 · Genes & Development
  44. Synthetic Effect between Envelope Stress and Lack of Outer Membrane Vesicle Production in Escherichia coli
    Carmen Schwechheimer, Meta J. Kuehn · 2013 · Journal of Bacteriology
  45. Tools for Characterizing Bacterial Protein Synthesis Inhibitors
    Cédric Orelle, Skylar Carlson, Bindiya Kaushal, Mashal M. Almutairi, Haipeng Liu, Anna Ochabowicz, Selwyn Quan, Van Cuong Pham, Catherine L. Squires, Brian T. Murphy et al. · 2013 · Antimicrobial Agents and Chemotherapy
  46. Escherichia coli cytochrome c peroxidase is a respiratory oxidase that enables the use of hydrogen peroxide as a terminal electron acceptor
    Maryam Khademian, James A. Imlay · 2017 · Proceedings of the National Academy of Sciences
  47. Klebsiella michiganensis transmission enhances resistance to Enterobacteriaceae gut invasion by nutrition competition
    Rita A. Oliveira, Katharine M. Ng, Margarida B. Correia, Vitor Cabral, Handuo Shi, Justin Laine Sonnenburg, Kerwyn Casey Huang, Karina B. Xavier · 2020 · Nature Microbiology
  48. Self-Organization of the Escherichia Coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy
    Ann L. McEvoy, Derek Greenfield, Hari Shroff, Gavin E. Crooks, Ned S. Wingreen, Eric Betzig, Jan Liphardt · 2010 · Biophysical Journal
  49. Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways
    Mohan Babu, J. Javier Díaz-Mejía, James Vlasblom, Alla G. Gagarinova, Sadhna Phanse, Chris Graham, Fouad Yousif, Huiming Ding, Xuejian Xiong, Anaies Nazarians-Armavil et al. · 2011 · PLoS Genetics
  50. Three serendipitous pathways in E. coli can bypass a block in pyridoxal‐5′‐phosphate synthesis
    Juhan Kim, Jamie P. Kershner, Yehor Y. Novikov, R. L. Shoemaker, Shelley D. Copley · 2010 · Molecular Systems Biology
  51. DNA Methylation
    Martin Marinus, Anders Løbner‐Olesen · 2014 · EcoSal Plus
  52. Functional and Structural Characterization of Four Glutaminases from Escherichia coli and Bacillus subtilis
    Greg Brown, Alex U. Singer, Michael Proudfoot, T. Skarina, Youngchang Kim, Changsoo Chang, Irina Dementieva, Ekaterina Kuznetsova, Claudio F. González, A. Joachimiak et al. · 2008 · Biochemistry
  53. HPLC-based quantification of bacterial housekeeping nucleotides and alarmone messengers ppGpp and pppGpp.
    Varik, Vallo, Oliveira, Sofia Raquel Alves, Hauryliuk, Vasili, Tenson, Tanel · 2017 · Scientific Reports
  54. Enhancing Tolerance to Short-Chain Alcohols by Engineering the Escherichia coli AcrB Efflux Pump to Secrete the Non-native Substrate n-Butanol
    Michael A. Fisher, Sergey Boyarskiy, Masaki R. Yamada, Niwen Kong, Štefan Bauer, Danielle Tullman‐Ercek · 2013 · ACS Synthetic Biology
  55. Metabolic suppression identifies new antibacterial inhibitors under nutrient limitation
    Soumaya Zlitni, Lauren F Ferruccio, Eric D. Brown · 2013 · Nature Chemical Biology
  56. The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4‐acetylcytidine of tRNA anticodon
    Yoshiho Ikeuchi, Kei Kitahara, Tsutomu Suzuki · 2008 · The EMBO Journal
  57. Siderophore-Mediated Cargo Delivery to the Cytoplasm of Escherichia coli and Pseudomonas aeruginosa : Syntheses of Monofunctionalized Enterobactin Scaffolds and Evaluation of Enterobactin–Cargo Conjugate Uptake
    Tengfei Zheng, Justin L. Bullock, Elizabeth M. Nolan · 2012 · Journal of the American Chemical Society
  58. Insulation of a synthetic hydrogen metabolism circuit in bacteria
    Christina M. Agapakis, Daniel C. Ducat, Patrick M. Boyle, Edwin H. Wintermute, Jeffrey C. Way, Pamela A. Silver · 2010 · Journal of Biological Engineering
  59. DNA‐crosslinker cisplatin eradicates bacterial persister cells
    Nityananda Chowdhury, Thammajun L. Wood, Mariano Martínez‐Vázquez, Rodolfo García‐Contreras, Thomas Keith Wood · 2016 · Biotechnology and Bioengineering
  60. Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress
    Sheila Ingemann Jensen, Rebecca M. Lennen, Markus J. Herrgård, Alex Toftgaard Nielsen · 2015 · Scientific Reports
  61. Xenobiotic metabolism and transport in Caenorhabditis elegans
    Jessica H. Hartman, Samuel J. Widmayer, Christina M. Bergemann, Dillon E. King, Katherine S. Morton, Riccardo F. Romersi, Laura E. Jameson, Maxwell C. K. Leung, Erik C. Andersen, Stefan Taubert et al. · 2021 · Journal of Toxicology and Environmental Health Part B
  62. Chemical genomics in Escherichia coli identifies an inhibitor of bacterial lipoprotein targeting
    Ranjana Pathania, Soumaya Zlitni, Courtney A. Barker, Rahul Das, David A. Gerritsma, Julie M. Lebert, Emilia Awuah, Giuseppe Melacini, Fred A Capretta, Eric D. Brown · 2009 · Nature Chemical Biology
  63. A Fail-Safe Mechanism in the Septal Ring Assembly Pathway Generated by the Sequential Recruitment of Cell Separation Amidases and Their Activators
    Nick T. Peters, Thuy Dinh, Thomas G. Bernhardt · 2011 · Journal of Bacteriology
  64. The phage tail tape measure protein, an inner membrane protein and a periplasmic chaperone play connected roles in the genome injection process of E . coli phage HK 97
    Nichole Cumby, Kelly Reimer, Dominique Mengin‐Lecreulx, Alan R. Davidson, Karen L. Maxwell · 2014 · Molecular Microbiology
  65. New Transposon Tools Tailored for Metabolic Engineering of Gram-Negative Microbial Cell Factories
    Esteban Martínez-García, Tomás Aparicio, Vı́ctor de Lorenzo, Pablo I. Nikel · 2014 · Frontiers in Bioengineering and Biotechnology
  66. The CpxR/CpxA Two-component Regulatory System Up-regulates the Multidrug Resistance Cascade to Facilitate Escherichia coli Resistance to a Model Antimicrobial Peptide
    Natasha Weatherspoon‐Griffin, Dezhi Yang, Wei Kong, Zichun Hua, Yixin Shi · 2014 · Journal of Biological Chemistry
  67. Excessive folate synthesis limits lifespan in the C. elegans: E. coliaging model
    Bhupinder Virk, Gonçalo dos Santos Correia, David P. Dixon, Inna Feyst, Jie Jia, Nikolin Oberleitner, Zoe Briggs, Emily Hodge, Robert Edwards, John Maxim Ward et al. · 2012 · BMC Biology
  68. Redefining the essential trafficking pathway for outer membrane lipoproteins
    Marcin Grabowicz, Thomas J. Silhavy · 2017 · Proceedings of the National Academy of Sciences
  69. High-throughput discovery of phage receptors using transposon insertion sequencing of bacteria
    Kaitlyn E. Kortright, Benjamin K. Chan, Paul E. Turner · 2020 · Proceedings of the National Academy of Sciences
  70. IcsA Surface Presentation in Shigella flexneri Requires the Periplasmic Chaperones DegP, Skp, and SurA
    Georgiana E. Purdy, Carolyn R. Fisher, Shelley M. Payne · 2007 · Journal of Bacteriology
  71. Identification of ZapD as a Cell Division Factor That Promotes the Assembly of FtsZ in Escherichia coli
    Jorge M. Durand-Heredia, Eugene Rivkin, Guoxiang Fan, Jorge Morales, Anuradha Janakiraman · 2012 · Journal of Bacteriology
  72. Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
    Byung‐Kwan Cho, Donghyuk Kim, Eric M. Knight, Karsten Zengler, Bernhard Ørn Palsson · 2014 · BMC Biology
  73. Flux analysis and metabolomics for systematic metabolic engineering of microorganisms
    Yoshihiro Toya, Hiroshi Shimizu · 2013 · Biotechnology Advances
  74. Novel System for Efficient Isolation of Clostridium Double-Crossover Allelic Exchange Mutants Enabling Markerless Chromosomal Gene Deletions and DNA Integration
    Mohab A. Al-Hinai, Alan G. Fast, Eleftherios Terry Papoutsakis · 2012 · Applied and Environmental Microbiology
  75. Fluorescent D-amino-acids reveal bi-cellular cell wall modifications important for Bdellovibrio bacteriovorus predation
    Erkin Kuru, Carey Lambert, Jonathan Rittichier, Rob Till, Adrien Ducret, Adeline Derouaux, Joe Gray, Jacob Biboy, Waldemar Vollmer, Michael S. VanNieuwenhze et al. · 2017 · Nature Microbiology
  76. Higher-Order Interaction between Species Inhibits Bacterial Invasion of a Phototroph-Predator Microbial Community
    Harry Mickalide, Seppe Kuehn · 2019 · Cell Systems
  77. Reciprocal Fitness Feedbacks Promote the Evolution of Mutualistic Cooperation
    Daniel Preußger, Samir Giri, Linea Katharina Muhsal, Leonardo Oña, Christian Kost · 2020 · Current Biology
  78. The functional proteome landscape of Escherichia coli
    André Mateus, Johannes F. Hevler, Jacob Bobonis, Nils Kurzawa, Malay Shah, Karin Mitosch, Camille Goemans, Dominic Helm, Frank Stein, Athanasios Typas et al. · 2020 · Nature
  79. Protein Aggregation Caused by Aminoglycoside Action Is Prevented by a Hydrogen Peroxide Scavenger
    Jiqiang Ling, Chris Cho, Li-Tao Guo, Hans R. Aerni, Jesse Rinehart, Dieter G. Söll · 2012 · Molecular Cell
  80. Predicting essential genes based on network and sequence analysis
    Yih-Chii Hwang, Chen-Ching Lin, Jen-Yun Chang, Hirotada Mori, Hsueh‐Fen Juan, Hsuan‐Cheng Huang · 2009 · Molecular BioSystems
  81. A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium
    Barquist, Lars, Langridge, Gemma C., Turner, Daniel J., Phan, Minh-Duy, Turner, A. Keith, Bateman, Alex, Parkhill, Julian, Wain, John, Gardner, Paul P. · 2013 · Nucleic Acids Research
  82. Bugs, drugs and chemical genomics
    Terry Roemer, JULIAN E. DAVIES, Guri N. Giaever, Corey Nislow · 2011 · Nature Chemical Biology
  83. Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli
    Chandan Shee, Janet L. Gibson, Michele C. Darrow, Caleb González, Susan M. Rosenberg · 2011 · Proceedings of the National Academy of Sciences
  84. Environmental factors affecting indole production in Escherichia coli
    Thi Hiep Han, Jin-Hyung Lee, Moo Hwan Cho, Thomas Keith Wood, Jintae Lee · 2010 · Research in Microbiology
  85. Identification of novel sRNAs involved in biofilm formation, motility and fimbriae formation in Escherichia coli
    Geunu Bak, Jungmin Lee, Shinae Suk, Daun Kim, Ji Young Lee, Kwang-sun Kim, Byong‐Seok Choi, Younghoon Lee · 2015 · Scientific Reports
  86. Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation
    Sebastian N. Kieper, Cristóbal Almendros, Juliane Behler, Rebecca E. McKenzie, Franklin L. Nóbrega, Anna C. Haagsma, Jochem N. A. Vink, Wolfgang R. Hess, Stan J. J. Brouns · 2018 · Cell Reports
  87. Phase separation in the outer membrane of Escherichia coli
    Georgina Benn, Irina V. Mikheyeva, Patrick George Inns, Joel C. Forster, Nikola Ojkic, Christian Bortolini, Maxim G. Ryadnov, Colin Kleanthous, Thomas J. Silhavy, Bart W. Hoogenboom · 2021 · Proceedings of the National Academy of Sciences
  88. Identifying essential genes in bacterial metabolic networks with machine learning methods
    Kitiporn Plaimas, Roland Eils, Rainer König · 2010 · BMC Systems Biology
  89. Chromosomal antioxidant genes have metal ion‐specific roles as determinants of bacterial metal tolerance
    Joe Jonathan Harrison, Valentina Tremaroli, Michelle A. Stan, Catherine S. Chan, Caterina Vacchi‐Suzzi, Belinda Heyne, Matthew R. Parsek, Howard Ceri, Raymond Joseph Turner · 2009 · Environmental Microbiology
  90. Stable-isotope labeling with amino acids in nematodes
    Larance, Mark, Bailly, Aymeric P, Pourkarimi, Ehsan, Hay, Ronald T, Buchanan, Grant, Coulthurst, Sarah, Xirodimas, Dimitris P, Gartner, Anton, Lamond, Angus I · 2011 · Nature Methods
  91. Enzyme Toolbox: Novel Enantiocomplementary Imine Reductases
    Philipp N. Scheller, Silvia Fademrecht, Sebastian Hofelzer, Jürgen Pleiss, Friedemann Leipold, Nicholas John Turner, Bettina M. Nestl, Bernhard Hauer · 2014 · ChemBioChem
  92. MazF-induced Growth Inhibition and Persister Generation in Escherichia coli
    Arti Tripathi, Pooja C. Dewan, Shahbaz Ahmed, Raghavan Varadarajan · 2013 · Journal of Biological Chemistry
  93. RalR (a DNase) and RalA (a small RNA) form a type I toxin–antitoxin system in Escherichia coli
    Yunxue Guo, Cecilia Quiroga, Qin Chen, Michael J. McAnulty, Michael J. Benedik, Thomas Keith Wood, Xiaoxue Wang · 2014 · Nucleic Acids Research
  94. Assembly and stability of flagellar motor in Escherichia coli
    Hui Li, Victor Sourjik · 2011 · Molecular Microbiology
  95. Metabolic engineering for efficient supply of acetyl-CoA from different carbon sources in Escherichia coli
    Shasha Zhang, Wei Yang, Hao Chen, Bo Liu, Baixue Lin, Yong Tao · 2019 · Microbial Cell Factories
  96. Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence
    Somenath Bakshi, Emanuele Leoncini, Charles J. Baker, Silvia J. Cañas-Duarte, Burak Okumuş, Johan Paulsson · 2021 · Nature Microbiology
  97. Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms
    Xiaoxue Wang, Younghoon Kim, Thomas Keith Wood · 2009 · The ISME Journal
  98. Delineation of a Bacterial Starvation Stress Response Network Which Can Mediate Antibiotic Tolerance Development
    Danny Ka Chun Fung, Edward Wai‐Chi Chan, Miu Ling Chin, Raphael C.Y. Chan · 2010 · Antimicrobial Agents and Chemotherapy
  99. White biotechnology: State of the art strategies for the development of biocatalysts for biorefining
    Stéphanie Heux, Isabelle Meynial‐Salles, Michael Joseph O’Donohue, Claire Dumon · 2015 · Biotechnology Advances
  100. Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity
    Hans Christopher Bernstein, Steven D. Paulson, Ross P. Carlson · 2011 · Journal of Biotechnology