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The genome sequence and structure of rice chromosome 1
Open accessAbstract
The rice species Oryza sativa is considered to be a model plant because of its small genome size, extensive genetic map, relative ease of transformation and synteny with other cereal crops. Here we report the essentially complete sequence of chromosome 1, the longest chromosome in the rice genome. We summarize characteristics of the chromosome structure and the biological insight gained from the sequence. The analysis of 43.3 megabases (Mb) of non-overlapping sequence reveals 6,756 protein coding genes, of which 3,161 show homology to proteins of Arabidopsis thaliana, another model plant. About 30% (2,073) of the genes have been functionally categorized. Rice chromosome 1 is (G + C)-rich, especially in its coding regions, and is characterized by several gene families that are dispersed or arranged in tandem repeats. Comparison with a draft sequence indicates the importance of a high-quality finished sequence.
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Cites
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Cited by
Genome-Wide Analysis of the GRAS Gene Family in Rice and Arabidopsis
Tian, C., Wan, P., Sun, S., Li, J., & Chen, M. (2004) · Plant Molecular Biology · doi:10.1023/b:plan.0000038256.89809.57 · Cited by 406
Bortiri, E., Chuck, G., Vollbrecht, E., Rocheford, T., Martienssen, R., & Hake, S. (2006) · The Plant Cell · doi:10.1105/tpc.105.039032 · Cited by 333
La Rota, M., Kantety, R. V., Yu, J.-K., & Sorrells, M. E. (2005) · BMC Genomics · doi:10.1186/1471-2164-6-23 · Cited by 276
Development of enhancer trap lines for functional analysis of the rice genome
Wu, C., Li, X., Yuan, W., Chen, G., Kilian, A., Li, J., Xu, C., Li, X., Zhou, D., Wang, S., et al. (2003) · The Plant Journal · doi:10.1046/j.1365-313x.2003.01808.x · Cited by 264
Sato, S., Soga, T., Nishioka, T., & Tomita, M. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02187.x · Cited by 259
Metadata
- Authors
- Sasaki, T., Matsumoto, T., Yamamoto, K., Sakata, K., Baba, T., Katayose, Y., Wu, J., Niimura, Y., Cheng, Z., Nagamura, Y., Antonio, B. A., Kanamori, H., Hosokawa, S., Masukawa, M., Arikawa, K., Chiden, Y., Hayashi, M., Okamoto, M., Ando, T., Aoki, H., Arita, K., Hamada, M., Harada, C., Hijishita, S., Honda, M., Ichikawa, Y., Idonuma, A., Iijima, M., Ikeda, M., Ikeno, M., Ito, S., Ito, T., Ito, Y., Ito, Y., Iwabuchi, A., Kamiya, K., Karasawa, W., Katagiri, S., Kikuta, A., Kobayashi, N., Kono, I., Machita, K., Maehara, T., Mizuno, H., Mizubayashi, T., Mukai, Y., Nagasaki, H., Nakashima, M., Nakama, Y., Nakamichi, Y., Nakamura, M., Namiki, N., Negishi, M., Ohta, I., Ono, N., Saji, S., Sakai, K., Shibata, M., Shimokawa, T., Shomura, A., Song, J., Takazaki, Y., Terasawa, K., Tsuji, K., Waki, K., Yamagata, H., Yamane, H., Yoshiki, S., Yoshihara, R., Yukawa, K., Zhong, H., Iwama, H., Endo, T., Ito, H., Hahn, J. H., Kim, H.-I., Eun, M.-Y., Yano, M., Jiang, J., & Gojobori, T.
- Venue
- Nature
- Published
- 2002-11
- Volume
- 420
- Issue
- 6913
- Pages
- 312-316
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W1981653927
- Cited by
- 550
- References
- 1
- FWCI
- 44.69
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Sasaki, T., Matsumoto, T., Yamamoto, K., Sakata, K., Baba, T., Katayose, Y., Wu, J., Niimura, Y., Cheng, Z., Nagamura, Y., Antonio, B. A., Kanamori, H., Hosokawa, S., Masukawa, M., Arikawa, K., Chiden, Y., Hayashi, M., Okamoto, M., Ando, T., . . . Gojobori, T. (2002). The genome sequence and structure of rice chromosome 1. Nature. https://doi.org/10.1038/nature01184
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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