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The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

The medaka draft genome and insights into vertebrate genome evolution

Kasahara, Masahiro, Naruse, Kiyoshi, Sasaki, Shin, Nakatani, Yoichiro, Qu, Wei, Ahsan, Budrul, Yamada, Tomoyuki, Nagayasu, Yukinobu, Doi, Koichiro, Kasai, Yasuhiro, Jindo, Tomoko, Kobayashi, Daisuke, Shimada, Atsuko, Toyoda, Atsushi, Kuroki, Yoko, Fujiyama, Asao, Sasaki, Takashi, Shimizu, Atsushi, Asakawa, Shuichi, Shimizu, Nobuyoshi, Hashimoto, Shin-ichi, Yang, Jun, Lee, Yongjun, Matsushima, Kouji, Sugano, Sumio, Sakaizumi, Mitsuru, Narita, Takanori, Ohishi, Kazuko, Haga, Shinobu, Ohta, Fumiko, Nomoto, Hisayo, Nogata, Keiko, Morishita, Tomomi, Endo, Tomoko, Shin-I, Tadasu, Takeda, Hiroyuki, Morishita, Shinichi, Kohara, Yuji·2007·Nature
DOI 10.1038/nature05846
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Crossref · 10.1038/nature05846

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  • There is a general consensus that the ancestral teleost genome contained 13 chromosomes.

    “There is a general consensus that the ancestral teleost genome contained 13 chromosomes (Kasahara et al. 2007; Nakatani and McLysaght 2017)—however, the precise delineation of genes descending from each of those 13 groups may be subject to modifications as the field evolves, which may lead to updates in the ancestral assignations of the regions in the comparative atlas.”

    From An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication (2022) · cites this paper as Kasahara et al. 2007

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Research works printed but not linked: 27

  1. Nelson, J. S. Fishes of the World (John Wiley & Sons, New York, 1994)
  2. Aparicio, S. et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297, 1301–1310 (2002) · DOI · Paper page
  3. Aida, T. On the inheritance of color in a fresh-water fish, Aplocheilus latipes Temminck and Schlegel, with special reference to sex-linked inheritance. Genetics 6, 554–573 (1921) · DOI
  4. Yamamoto, T. Artificially induced sex-reversal in genotypic males of the Medaka (Oryzias latipes). J. Exp. Zool. 123, 571–594 (1953) · DOI
  5. Matsuda, M. et al. DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature 417, 559–563 (2002) · DOI
  6. Furutani-Seiki, M. & Wittbrodt, J. Medaka and zebrafish, an evolutionary twin study. Mech. Dev. 121, 629–637 (2004) · DOI
  7. Hyodo-Taguchi, Y. Inbred strains of the medaka, Oryzias latipes.. Fish Biol. J. Medaka 8, 11–14 (1990)
  8. Wittbrodt, J., Shima, A. & Schartl, M. Medaka—a model organism from the Far East. Nature Rev. Genet. 3, 53–64 (2002) · DOI
  9. Naruse, K., Hori, H., Shimizu, N., Kohara, Y. & Takeda, H. Medaka genomics: a bridge between mutant phenotype and gene function. Mech. Dev. 121, 619–628 (2004) · DOI
  10. Schwartz, S. et al. Human–mouse alignments with BLASTZ. Genome Res. 13, 103–107 (2003) · DOI
  11. Zhang, J. Evolution of DMY, a newly emergent male sex-determination gene of medaka fish. Genetics 166, 1887–1895 (2004) · DOI
  12. Kondo, M., Nagao, E., Mitani, H. & Shima, A. Differences in recombination frequencies during female and male meioses of the sex chromosomes of the medaka, Oryzias latipes. Genet. Res. 78, 23–30 (2001) · DOI
  13. Takehana, Y., Nagai, N., Matsuda, M., Tsuchiya, K. & Sakaizumi, M. Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zoolog. Sci. 20, 1279–1291 (2003) · DOI
  14. Hashimoto, S. et al. 5′-end SAGE for the analysis of transcriptional start sites. Nature Biotechnol. 22, 1146–1149 (2004) · DOI
  15. Ohno, S. Evolution by Gene Duplication (Springer, New York, 1970) · DOI · Paper page
  16. Naruse, K. et al. A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res. 14, 820–828 (2004) · DOI
  17. Woods, I. G. et al. The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res. 15, 1307–1314 (2005) · DOI
  18. Taylor, J. S., Braasch, I., Frickey, T., Meyer, A. & Van de Peer, Y. Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res. 13, 382–390 (2003) · DOI
  19. Christoffels, A. et al. Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol. Biol. Evol. 21, 1146–1151 (2004) · DOI
  20. Vandepoele, K., De Vos, W., Taylor, J. S., Meyer, A. & Van de Peer, Y. Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc. Natl Acad. Sci. USA 101, 1638–1643 (2004) · DOI
  21. Crow, K. D., Stadler, P. F., Lynch, V. J., Amemiya, C. & Wagner, G. P. The “fish-specific” hox cluster duplication is coincident with the origin of teleosts. Mol. Biol. Evol. 23, 121–136 (2006) · DOI
  22. Yamanoue, Y., Miya, M., Inoue, J. G., Matsuura, K. & Nishida, M. The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet. Syst. 81, 29–39 (2006) · DOI
  23. Hedges, S. B. & Kumar, S. Genomics. Vertebrate genomes compared. Science 297, 1283–1285 (2002) · DOI
  24. Miya, M. et al. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol. Phylogenet. Evol. 26, 121–138 (2003) · DOI
  25. Inoue, J. G., Miya, M., Tsukamoto, K. & Nishida, M. Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the “ancient fish”. Mol. Phylogenet. Evol. 26, 110–120 (2003) · DOI
  26. Takehana, Y., Naruse, K. & Sakaizumi, M. Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 36, 417–428 (2005) · DOI
  27. Kellis, M., Birren, B. W. & Lander, E. S. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428, 617–624 (2004) · DOI

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Metadata

Authors
Kasahara, M., Naruse, K., Sasaki, S., Nakatani, Y., Qu, W., Ahsan, B., Yamada, T., Nagayasu, Y., Doi, K., Kasai, Y., Jindo, T., Kobayashi, D., Shimada, A., Toyoda, A., Kuroki, Y., Fujiyama, A., Sasaki, T., Shimizu, A., Asakawa, S., Shimizu, N., Hashimoto, S.-I., Yang, J., Lee, Y., Matsushima, K., Sugano, S., Sakaizumi, M., Narita, T., Ohishi, K., Haga, S., Ohta, F., Nomoto, H., Nogata, K., Morishita, T., Endo, T., Shin-I, T., Takeda, H., Morishita, S., & Kohara, Y.
Venue
Nature
Publisher
Springer Science and Business Media LLC
Published
2007-06
Volume
447
Issue
7145
Pages
714-719
ISSN
  • 0028-0836
  • 1476-4687
DOI
10.1038/nature05846
Cited by
1,038
References
3
Language
en
Licence
creativecommons.org/licenses/by-nc-sa/3.0/ (tdm)

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