The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
Open accessAbstract
Comprehensive identification of polymorphisms among individuals within a species is essential both for studying the genetic basis of phenotypic differences and for elucidating the evolutionary history of the species. Large-scale polymorphism surveys have recently been reported for human, mouse and Arabidopsis thaliana. Here we report a nucleotide-level survey of genomic variation in a diverse collection of 63 Saccharomyces cerevisiae strains sampled from different ecological niches (beer, bread, vineyards, immunocompromised individuals, various fermentations and nature) and from locations on different continents. We hybridized genomic DNA from each strain to whole-genome tiling microarrays and detected 1.89 million single nucleotide polymorphisms, which were grouped into 101,343 distinct segregating sites. We also identified 3,985 deletion events of length >200 base pairs among the surveyed strains. We analysed the genome-wide patterns of nucleotide polymorphism and deletion variants, and measured the extent of linkage disequilibrium in S. cerevisiae. These results and the polymorphism resource we have generated lay the foundation for genome-wide association studies in yeast. We also examined the population structure of S. cerevisiae, providing support for multiple domestication events as well as insight into the origins of pathogenic strains.
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Cites
A haplotype map of the human genome
The International HapMap Consortium (2005) · Nature · doi:10.1038/nature04226 · Cited by 5,858
Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis
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Invasive Saccharomyces Infection: A Comprehensive Review
Enache-Angoulvant, A., & Hennequin, C. (2005) · Clinical Infectious Diseases · doi:10.1086/497832 · Cited by 369
Forward genetic analysis of visual behavior in zebrafish
Muto, A., Orger, M. B., Wehman, A. M., Smear, M. C., Kay, J. N., Page-McCaw, P. S., Gahtan, E., Xiao, T., Nevin, L. M., Gosse, N. J., et al. (2005) · PLoS Genetics · doi:10.1371/journal.pgen.0010066 · Cited by 321
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The population genetics of commensal Escherichia coli
Tenaillon, O., Skurnik, D., Picard, B., & Denamur, E. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2298 · Cited by 1,533
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergström, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., et al. (2018) · Nature · doi:10.1038/s41586-018-0030-5 · Cited by 1,117
Self-citationDomestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
Gallone, B., Steensels, J., Prahl, T., Soriaga, L., Saels, V., Herrera-Malaver, B., Merlevede, A., Roncoroni, M., Voordeckers, K., Miraglia, L., et al. (2016) · Cell · doi:10.1016/j.cell.2016.08.020 · Cited by 679
Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
Decker, J. E., McKay, S. D., Rolf, M. M., Kim, J., Molina Alcalá, A., Sonstegard, T. S., Hanotte, O., Götherström, A., Seabury, C. M., Praharani, L., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004254 · Cited by 521
Novo, M., Bigey, F., Beyne, E., Galeote, V., Gavory, F., Mallet, S., Cambon, B., Legras, J.-L., Wincker, P., Casaregola, S., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0904673106 · Cited by 428
Metadata
- Authors
- Schacherer, J., Shapiro, J. A., Ruderfer, D. M., & Kruglyak, L.
- Venue
- Nature
- Published
- 2009-02-11
- Volume
- 458
- Issue
- 7236
- Pages
- 342-345
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2039316942
- Cited by
- 453
- References
- 5
- FWCI
- 16.08
- Type
- journal article
- Language
- en
- Open access
- green
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