A gate–latch–lock mechanism for hormone signalling by abscisic acid receptors
Open accessAbstract
Abscisic acid (ABA) is a ubiquitous hormone that regulates plant growth, development and responses to environmental stresses. Its action is mediated by the PYR/PYL/RCAR family of START proteins, but it remains unclear how these receptors bind ABA and, in turn, how hormone binding leads to inhibition of the downstream type 2C protein phosphatase (PP2C) effectors. Here we report crystal structures of apo and ABA-bound receptors as well as a ternary PYL2-ABA-PP2C complex. The apo receptors contain an open ligand-binding pocket flanked by a gate that closes in response to ABA by way of conformational changes in two highly conserved beta-loops that serve as a gate and latch. Moreover, ABA-induced closure of the gate creates a surface that enables the receptor to dock into and competitively inhibit the PP2C active site. A conserved tryptophan in the PP2C inserts directly between the gate and latch, which functions to further lock the receptor in a closed conformation. Together, our results identify a conserved gate-latch-lock mechanism underlying ABA signalling.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
<i>Phaser</i> crystallographic software
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., & Read, R. J. (2007) · Journal of Applied Crystallography · doi:10.1107/s0021889807021206 · Cited by 20,612 · see citing works
Flagged first, then by citations
Research works printed but not linked: 40
- [1]Yoshida T ABA-hypersensitive germination3 encodes a protein phosphatase 2C (AtPP2CA) that strongly regulates abscisic acid signaling during germination among Arabidopsis protein phosphatase 2Cs Plant Physiol 2006 140 115 126 16339800 PMC1326036
- [2]Mustilli AC Merlot S Vavasseur A Fenzi F Giraudat J Arabidopsis OST1 protein kinase mediates the regulation of stomatal aperture by abscisic acid and acts upstream of reactive oxygen species production Plant Cell 2002 14 3089 3099 12468729 PMC151204
- [3]Chinnusamy V Gong Z Zhu JK Abscisic acid-mediated epigenetic processes in plant development and stress responses J Integr Plant Biol 2008 50 1187 1195 19017106 PMC2862557
- [4]Yoshida R ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis Plant Cell Physiol 2002 43 1473 1483 12514244
- [5]Fujii H Verslues PE Zhu JK Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis Plant Cell 2007 19 485 494 17307925 PMC1867333
- [6]Pennisi E Plant biology. Stressed out over a stress hormone Science 2009 324 1012 1013 19460982
- [7]Park SY Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins Science 2009 324 1068 1071 19407142 PMC2827199
- [8]Ma Y Regulators of PP2C phosphatase activity function as abscisic acid sensors Science 2009 324 1064 1068 19407143
- [9]Santiago J Modulation of drought resistance by the abscisic acid receptor PYL5 through inhibition of clade A PP2Cs Plant J 2009 19624469
- [10]Kobayashi Y Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors Plant J 2005 44 939 949 16359387
- [11]Furihata T Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1 Proc Natl Acad Sci U S A 2006 103 1988 1993 16446457 PMC1413621
- [12]Zhu JK Salt and drought stress signal transduction in plants Annu Rev Plant Biol 2002 53 247 273 12221975 PMC3128348
- [13]Yamaguchi-Shinozaki K Shinozaki K Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses Annu Rev Plant Biol 2006 57 781 803 16669782
- [14]Gajhede M X-ray and NMR structure of Bet v 1, the origin of birch pollen allergy Nat Struct Biol 1996 3 1040 1045 8946858
- [15]Iyer LM Koonin EV Aravind L Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily Proteins 2001 43 134 144 11276083
- [16]Almo SC Structural genomics of protein phosphatases J Struct Funct Genomics 2007 8 121 140 18058037 PMC4163028
- [17]Das AK Helps NR Cohen PT Barford D Crystal structure of the protein serine/threonine phosphatase 2C at 2.0 A resolution EMBO J 1996 15 6798 6809 9003755 PMC452505
- [18]Bertauche N Leung J Giraudat J Protein phosphatase activity of abscisic acid insensitive 1 (ABI1) protein from Arabidopsis thaliana Eur J Biochem 1996 241 193 200 8898906
- [19]Sheen J Mutational analysis of protein phosphatase 2C involved in abscisic acid signal transduction in higher plants Proc Natl Acad Sci U S A 1998 95 975 980 9448270 PMC18643
- [20]Yoo SD Cho YH Sheen J Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis Nature protocols 2007 2 1565 1572 17585298
- [21]Allen-Baume V Segui B Cockcroft S Current thoughts on the phosphatidylinositol transfer protein family FEBS Lett 2002 531 74 80 12401207
- [22]Seedorf U Ellinghaus P Nofer J. Roch Sterol carrier protein-2 Biochim Biophys Acta 2000 1486 45 54 10856712
- [23]Wirtz KW Phospholipid transfer proteins in perspective FEBS Lett 2006 580 5436 5441 16828756
- [24]Schrick K Nguyen D Karlowski WM Mayer KF START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors Genome Biol 2004 5 R41 15186492 PMC463074
- [25]Olayioye MA StarD10, a START domain protein overexpressed in breast cancer, functions as a phospholipid transfer protein J Biol Chem 2005 280 27436 27442 15911624
- [26]McCoy AJ Phaser crystallographic software J Appl Crystallogr 2007 40 658 674 19461840 PMC2483472
- [27]Emsley P Cowtan K Coot: model-building tools for molecular graphics Acta Crystallogr D Biol Crystallogr 2004 60 2126 2132 15572765
- [28]Kleywegt GJ Jones TA Efficient rebuilding of protein structures Acta Crystallogr D Biol Crystallogr 1996 52 829 832 15299648
- [29]Brunger AT Crystallography & NMR system: A new software suite for macromolecular structure determination Acta Crystallogr D Biol Crystallogr 1998 54 905 921 9757107
- [30]Murshudov GN Vagin AA Lebedev A Wilson KS Dodson EJ Efficient anisotropic refinement of macromolecular structures using FFT Acta Crystallogr D Biol Crystallogr 1999 55 247 255 10089417
- [31]Smith PA A plasmid expression system for quantitative in vivo biotinylation of thioredoxin fusion proteins in Escherichia coli Nucleic Acids Res 1998 26 1414 1420 9490786 PMC147411
- [32]Otwinowski Z Borek D Majewski W Minor W Multiparametric scaling of diffraction intensities Acta Crystallogr A 2003 59 228 234 12714773
- [33]Kleywegt GJ Jones TA Detection, delineation, measurement and display of cavities in macromolecular structures Acta Crystallogr D Biol Crystallogr 1994 50 178 185 15299456
- [34]Wiehe K The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI Proteins 2007 69 719 725 17803212
- [35]Li Y Kovach A Suino-Powell K Martynowski D Xu HE Structural and biochemical basis for the binding selectivity of peroxisome proliferator-activated receptor gamma to PGC-1alpha J Biol Chem 2008 283 19132 19139 18469005 PMC2441548
- [36]Suino K The Nuclear Xenobiotic Receptor CAR; Structural Determinants of Constitutive Activation and Heterodimerization Mol Cell 2004 16 893 905 15610733
- [37]Xu HE Structural basis for antagonist-mediated recruitment of nuclear co-repressors by PPARalpha Nature 2002 415 813 817 11845213
- [38]Cutler SR Ehrhardt DW Griffitts JS Somerville CR Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency Proc Natl Acad Sci U S A 2000 97 3718 3723 10737809 PMC16306
- [39]Delaglio F NMRPipe: a multidimensional spectral processing system based on UNIX pipes Journal of biomolecular NMR 1995 6 277 293 8520220
- [41]Bahrami A Assadi AH Markley JL Eghbalnia HR Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy PLoS computational biology 2009 5 e1000307 19282963 PMC2645676
Cited by
Sorted by citations
Photosynthesis under stressful environments: An overview
Ashraf, M., & Harris, P. J. C. (2013) · Photosynthetica · doi:10.1007/s11099-013-0021-6 · Cited by 2,028 · see citing works
Jasmonate perception by inositol-phosphate-potentiated COI1–JAZ co-receptor
Sheard, L. B., Tan, X., Mao, H., Withers, J., Ben-Nissan, G., Hinds, T. R., Kobayashi, Y., Hsu, F.-F., Sharon, M., Browse, J., et al. (2010) · Nature · doi:10.1038/nature09430 · Cited by 1,497 · see citing works
Research on plant abiotic stress responses in the post‐genome era: past, present and future
Hirayama, T., & Shinozaki, K. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04124.x · Cited by 1,215 · see citing works
Signaling mechanisms in abscisic acid-mediated stomatal closure
Hsu, P., Dubeaux, G., Takahashi, Y., & Schroeder, J. I. (2021) · The Plant Journal · doi:10.1111/tpj.15067 · Cited by 546 · see citing works
Tsuzuki, T., Takahashi, K., Inoue, S.-I., Okigaki, Y., Tomiyama, M., Hossain, M. A., Shimazaki, K.-I., Murata, Y., & Kinoshita, T. (2011) · Journal of Plant Research · doi:10.1007/s10265-011-0426-x · Cited by 83 · see citing works
Zhang, F., Lu, X., Lv, Z., Zhang, L., Zhu, M., Jiang, W., Wang, G., Sun, X., & Tang, K. (2013) · PLoS ONE · doi:10.1371/journal.pone.0056697 · Cited by 73 · see citing works
- Authors
- Melcher, K., Ng, L.-M., Zhou, X. E., Soon, F.-F., Xu, Y., Suino-Powell, K. M., Park, S.-Y., Weiner, J. J., Fujii, H., Chinnusamy, V., Kovach, A., Li, J., Wang, Y., Li, J., Peterson, F. C., Jensen, D. R., Yong, E.-L., Volkman, B. F., Cutler, S. R., Zhu, J.-K., & Xu, H. E.
- Affiliations
- Van Andel Institute (US)
- University of California, Riverside (US)
- Medical College of Wisconsin (US)
- Chinese Academy of Sciences (CN)
- National University of Singapore (SG)
- Corresponding author
- Xu, H. Eric
- ORCID
- Venue
- Nature
- Published
- 2009-11-06
- Volume
- 462
- Issue
- 7273
- Pages
- 602-608
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC2810868
- OpenAlex
- W2155619616
- Cited by
- 731
- References
- 1
- Citations by year
- 2026: 33 · 2025: 43 · 2024: 49 · 2023: 35 · 2022: 39 · 2021: 48 · 2020: 50 · 2019: 53 · 2018: 33 · 2017: 46 · 2016: 25 · 2015: 40 · 2014: 43 · 2013: 44 · 2012: 39
- FWCI
- 60.31
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) (submittedVersion)
- Funders
- National Heart, Lung, and Blood Institute (R01HL089301)
- National Institute of General Medical Sciences (R01GM087413)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK066202, R01DK071662)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Stress Responses and Tolerance
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Seed Germination and Physiology
- Keywords
- abscisic acid signaling, PYR/PYL/RCAR receptors, protein phosphatase 2C, binding pocket, receptor conformational change, ABI1, ABI2, plant hormone receptors
- MeSH terms
- Abscisic Acid, Binding Sites, DNA Mutational Analysis, Models, Molecular, Protein Binding, Signal Transduction, Arabidopsis, Protein Structure, Tertiary, Arabidopsis Proteins, Plants, Genetically Modified
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review