Human body epigenome maps reveal noncanonical DNA methylation variation

Human DNA methylomes at base resolution show widespread epigenomic differences

Lister, R., Pelizzola, M., Dowen, R. H., Hawkins, R. D., Hon, G., Tonti-Filippini, J., Nery, J. R., Lee, L., Ye, Z., Ngo, Q.-M., et al. (2009) · Nature · doi:10.1038/nature08514 · Cited by 4,673

GREAT improves functional interpretation of cis-regulatory regions

McLean, C. Y., Bristor, D., Hiller, M., Clarke, S. L., Schaar, B. T., Lowe, C. B., Wenger, A. M., & Bejerano, G. (2010) · Nature Biotechnology · doi:10.1038/nbt.1630 · Cited by 4,502

Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

Maurano, M. T., Humbert, R., Rynes, E., Thurman, R. E., Haugen, E., Wang, H., Reynolds, A. P., Sandstrom, R., Qu, H., Brody, J., et al. (2012) · Science · doi:10.1126/science.1222794 · Cited by 3,716

Super-enhancers in the control of cell identity and disease

Hnisz, D., Abraham, B. J., Lee, T. I., Lau, A., Saint-André, V., Sigova, A. A., Hoke, H. A., & Young, R. A. (2013) · Cell · doi:10.1016/j.cell.2013.09.053 · Cited by 3,662

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

Irizarry, R. A., Ladd-Acosta, C., Wen, B., Wu, Z., Montano, C., Onyango, P., Cui, H., Gabo, K., Rongione, M., Webster, M., et al. (2009) · Nature Genetics · doi:10.1038/ng.298 · Cited by 2,177

X-inactivation profile reveals extensive variability in X-linked gene expression in females

Carrel, L., & Willard, H. F. (2005) · Nature · doi:10.1038/nature03479 · Cited by 2,097

Global epigenomic reconfiguration during mammalian brain development

Lister, R., Mukamel, E. A., Nery, J. R., Urich, M., Puddifoot, C. A., Johnson, N. D., Lucero, J., Huang, Y., Dwork, A. J., Schultz, M. D., et al. (2013) · Science · doi:10.1126/science.1237905 · Cited by 1,830

Conserved role of intragenic DNA methylation in regulating alternative promoters

Maunakea, A. K., Nagarajan, R. P., Bilenky, M., Ballinger, T. J., D’Souza, C., Fouse, S. D., Johnson, B. E., Hong, C., Nielsen, C., Zhao, Y., et al. (2010) · Nature · doi:10.1038/nature09165 · Cited by 1,743

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Lister, R., Pelizzola, M., Kida, Y. S., Hawkins, R. D., Nery, J. R., Hon, G. C., Antosiewicz‐Bourget, J., O’Malley, R. C., Castanon, R., Klugman, S. A., et al. (2011) · Nature · doi:10.1038/nature09798 · Cited by 1,595

Charting a dynamic DNA methylation landscape of the human genome

Ziller, M. J., Gu, H., Müller, F., Donaghey, J., Tsai, L. T.-Y., Kohlbacher, O., De Jager, P. L., Rosen, E. D., Bennett, D. A., Bernstein, B. E., et al. (2013) · Nature · doi:10.1038/nature12433 · Cited by 1,357

The Role of HDAC6 in Glioblastoma Multiforme: A New Avenue to Therapeutic Interventions?

Spallotta, F., & Illi, B. (2024) · Biomedicines · doi:10.3390/biomedicines12112631 · Cited by 13

Porcine endogenous retrovirus: classification, molecular structure, regulation, function, and potential risk in xenotransplantation

Liu, Y., Niu, Y., Ma, X., Xiang, Y., Wu, D. J., Li, W., Wang, T., & Niu, D. (2023) · Functional & Integrative Genomics · doi:10.1007/s10142-023-00984-7 · Cited by 12

Exploring genome-wide DNA methylation patterns in Aicardi syndrome

Piras, I. S., Mills, G., Llaci, L., Naymik, M., Ramsey, K. M., Belnap, N., Balak, C., Jepsen, W. M., Szelinger, S., Siniard, A. L., et al. (2017) · Epigenomics · doi:10.2217/epi-2017-0060 · Cited by 12

Characteristics of allelic gene expression in human brain cells from single-cell RNA-seq data analysis

Zhao, D., Lin, M., Pedrosa, E., Lachman, H. M., & Zheng, D. (2017) · BMC Genomics · doi:10.1186/s12864-017-4261-x · Cited by 12

Systematic identification of regions where DNA methylation is correlated with transcription refines regulatory logic in normal and tumour tissues

Heery, R., & Schaefer, M. H. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf949 · Cited by 11

Cell Reprogramming Preserving Epigenetic Age: Advantages and Limitations

Samoylova, E. M., & Baklaushev, V. P. (2020) · Biochemistry (Moscow) · doi:10.1134/s0006297920090047 · Cited by 12

Epigenetic differences in an identical genetic background modulate alternative splicing in A. thaliana

Chaudhary, S., Jabre, I., & Syed, N. H. (2021) · Genomics · doi:10.1016/j.ygeno.2021.08.006 · Cited by 11

Epigenomic divergence correlates with sequence polymorphism in Arabidopsis paralogs

Raju, S. K. K., Lensink, M., Kliebenstein, D. J., Niederhuth, C. E., & Monroe, J. G. (2023) · New Phytologist · doi:10.1111/nph.19227 · Cited by 11

Methylation patterns in marginal zone lymphoma

Arribas, A. J., & Bertoni, F. (2016) · Best Practice & Research Clinical Haematology · doi:10.1016/j.beha.2016.09.003 · Cited by 11

Mechanistic insights into recognition of symmetric methylated cytosines in CpG and non-CpG DNA by UHRF1 SRA

Abhishek, S., Nakarakanti, N. K., Deeksha, W., & Rajakumara, E. (2021) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2020.12.149 · Cited by 11

Allele-specific RNAN6-methyladenosine modifications reveal functional genetic variants in human tissuesPreprint

Cao, S., Zhu, H., Cui, J. J., Liu, S., Li, Y., Shi, J., Mo, J., Wang, Z., Wang, H., Hu, J., et al. (2023) · Genome Research · doi:10.1101/gr.277704.123 · Cited by 11

Deep learning imputes DNA methylation states in single cells and enhances the detection of epigenetic alterations in schizophrenia

Zhou, J., Luo, C., Liu, H., Heffel, M. G., Straub, R. E., Kleinman, J. E., Hyde, T. M., Ecker, J. R., Weinberger, D. R., & Han, S. (2025) · Cell Genomics · doi:10.1016/j.xgen.2025.100774 · Cited by 10

Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees

Jiang, Y., Hu, J., Li, Y., Tang, X., Peng, X., Xie, L., Song, H., Zhou, Z., & Xu, J. (2025) · Molecular Biology and Evolution · doi:10.1093/molbev/msaf074 · Cited by 10

Non-CG DNA methylation in animal genomes

Brethouwer, T., de Mendoza, A., & Bogdanović, O. (2025) · Nature Genetics · doi:10.1038/s41588-025-02303-1 · Cited by 14

DNMT3AR882-associated hypomethylation patterns are maintained in primary AML xenografts, but not in the DNMT3AR882C OCI-AML3 leukemia cell line

Chen, D. Y., Christopher, M. J., Helton, N., Ferguson, I. M., Ley, T. J., & Spencer, D. H. (2018) · Blood Cancer Journal · doi:10.1038/s41408-018-0072-9 · Cited by 10

Combined effects of progesterone and SOCS3 DNA methylation on T2DM: a case–control study

Wang, L., Mao, Z., Liu, X., Wei, D., Liu, P., Nie, L., Fan, K., Kang, N., Song, Y., Xu, Q., et al. (2021) · Clinical Epigenetics · doi:10.1186/s13148-021-01172-9 · Cited by 10

Mouse olfactory bulb methylome and hydroxymethylome maps reveal noncanonical active turnover of DNA methylation

Ma, Q., Lü, H., Xu, Z., Zhou, Y., & Ci, W. (2017) · Epigenetics · doi:10.1080/15592294.2017.1356958 · Cited by 11

Positive/negative ion-switching-based LC–MS/MS method for quantification of cytosine derivatives produced by the TET-family 5-methylcytosine dioxygenases

Dey, A. S., Ayon, N. J., Bhattacharya, C., Gutheil, W. G., & Mukherji, M. (2020) · Biology Methods and Protocols · doi:10.1093/biomethods/bpaa019 · Cited by 10

The emerging landscape of in vitro and in vivo epigenetic allelic effects

Gregg, C. J. (2017) · F1000Research · doi:10.12688/f1000research.11491.1 · Cited by 10

Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity

Hahn, O., Stubbs, T. M., Reik, W., Grönke, S., Beyer, A., & Partridge, L. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007766 · Cited by 10

Correlation between Vitalism and Genetics According to the Paradigm of Complexity

Teixeira, M. Z. (2019) · Homeopathy · doi:10.1055/s-0039-1692162 · Cited by 10

Maternal Undernutrition Affects Fetal Thymus DNA Methylation, Gene Expression, and, Thereby, Metabolism and Immunopoiesis in Wagyu (Japanese Black) Cattle

Phomvisith, O., Muroya, S., OTOMARU, K., Oshima, K., Oshima, I., Nishino, D., Haginouchi, T., & Gotoh, T. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25179242 · Cited by 11

Using human disease mutations to understand de novo DNA methyltransferase function

Rolls, W., Wilson, M. D., & Sproul, D. (2024) · Biochemical Society Transactions · doi:10.1042/bst20231017 · Cited by 10

DNA Methylation Patterns Can Estimate Nonequivalent Outcomes of Breast Cancer with the Same Receptor Subtypes

Zhang, M., Zhang, S., Wen, Y., Wang, Y., Wei, Y., Liu, H., Zhang, D., Su, J., Wang, F., & Zhang, Y. (2015) · PLoS ONE · doi:10.1371/journal.pone.0142279 · Cited by 9

DNA methylomic homogeneity and heterogeneity in muscles and testes throughout pig adulthood

Min, Z., Xiao, S., Guo, T., Rao, L., Li, L., Zhang, Z., & Huang, L. (2020) · Aging · doi:10.18632/aging.104143 · Cited by 9

Compilation of Modern Technologies To Map Genome‐Wide Cytosine Modifications in DNA

Zeng, H., He, B., & Yi, C. (2019) · ChemBioChem · doi:10.1002/cbic.201900035 · Cited by 9

DNA methylation landscape of 16 canine somatic tissues by methylation-sensitive restriction enzyme-based next generation sequencing

Yamazaki, J., Matsumoto, Y., Jelínek, J., Ishizaki, T., Maeda, S., Watanabe, K., Ishihara, G., Yamagishi, J., & Takiguchi, M. (2021) · Scientific Reports · doi:10.1038/s41598-021-89279-0 · Cited by 9

Sexually Dimorphic Gene Expression in X and Y Sperms Instructs Sexual Dimorphism of Embryonic Genome Activation in Yellow Catfish (Pelteobagrus fulvidraco)

Xiong, Y., Wang, D., Guo, W., Gong, G., Chen, Z., Tang, Q., & Mei, J. (2022) · Biology · doi:10.3390/biology11121818 · Cited by 9

Epigenomic diversification within the genus Lupinus

Susek, K., Brąszewska-Zalewska, A., Bewick, A. J., Hasterok, R., Schmitz, R. J., & Naganowska, B. (2017) · PLoS ONE · doi:10.1371/journal.pone.0179821 · Cited by 9

The Role of Epigenetic Dysregulation in Suicidal Behaviors

Fiori, L. M., & Turecki, G. (2020) · Current topics in behavioral neurosciences · doi:10.1007/7854_2020_160 · Cited by 10

Copy number-aware deconvolution of tumor-normal DNA methylation profilesPreprint

Cadieux, E. L., Mensah, N., Castignani, C., Tanić, M., Wilson, G. A., Dietzen, M., Dhami, P., Vaikkinen, H., Verfaillie, A., Cotobal, C., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.03.366252 · Cited by 9

Characterization of Rationally Designed CRISPR/Cas9-Based DNA Methyltransferases with Distinct Methyltransferase and Gene Silencing Activities in Human Cell Lines and Primary Human T Cells

Guerra-Resendez, R. S., Lydon, S. L., Ma, A. J., Bedford, G. C., Reed, D. R., Kim, S. H., Terán, E. R., Nishiguchi, T., Escobar, M., DiNardo, A. R., et al. (2025) · ACS Synthetic Biology · doi:10.1021/acssynbio.4c00569 · Cited by 10

Precision plant epigenome editing: what, how, and why

Leech, D., Previtera, D. A., Zhang, Y., Botella, J. R., & Crisp, P. A. (2025) · Trends in Plant Science · doi:10.1016/j.tplants.2025.08.009 · Cited by 10

The sequence preference of DNA methylation variation in mammalians

Zhang, L., Gu, C., Yang, L., Tang, F., & Gao, Y. Q. (2017) · PLoS ONE · doi:10.1371/journal.pone.0186559 · Cited by 8

Genome-Wide Differential DNA Methylomes Provide Insights into the Infertility of Triploid Oysters

Sun, D., Yu, H., & Li, Q. (2022) · Marine Biotechnology · doi:10.1007/s10126-021-10083-y · Cited by 8

The mediation role of SOCS3 methylation in the effect of serum testosterone on type 2 diabetes

Wang, L., Liu, X., Wei, D., Kang, N., Nie, L., Liu, P., Fan, K., Zhang, L., Hou, J., Li, X., et al. (2021) · Journal of Diabetes · doi:10.1111/1753-0407.13167 · Cited by 8

The long non-coding RNA GHSROS reprograms prostate cancer cell lines toward a more aggressive phenotype

Thomas, P. B., Jeffery, P. L., Gahete, M. D., Whiteside, E., Walpole, C., Maugham, M., Jovanovic, L., Gunter, J. H., Williams, E. D., Nelson, C. C., et al. (2021) · PeerJ · doi:10.7717/peerj.10280 · Cited by 8

A ubiquitin-proteasome inhibitor bortezomib suppresses the expression of CYP11B2, a key enzyme of aldosterone synthesis

Ito, R., Sato, I., Tsujita, T., Yokoyama, A., & Sugawara, A. (2017) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2017.05.109 · Cited by 8

The novel TP53 3′-end methylation pattern associated with its expression would be a potential biomarker for breast cancer detection

Zeng, F., Heng, J., Guo, X., Wang, Y., Wu, W., Tang, L., Chen, M., Wang, S., Deng, H., & Wang, J. (2020) · Breast Cancer Research and Treatment · doi:10.1007/s10549-020-05536-2 · Cited by 8

Approaches to Whole-Genome Methylome Analysis in Plants

Yang, X., & Mackenzie, S. A. (2020) · Methods in molecular biology · doi:10.1007/978-1-0716-0179-2_2 · Cited by 8

Monitoring Dynamics of DNA Methylation at Single-Cell Resolution during Development and DiseasePreprint

Stelzer, Y., & Jaenisch, R. (2015) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2015.80.027334 · Cited by 8

Intrauterine hyperglycemia impairs mouse primordial germ cell development and fertility by sex-specific epigenetic reprogramming interference

Cong, J., Li, Q., Li, Y., Li, M., Shi, Y., Hu, P., Yin, X., Zhang, Q., Sheng, J., Li, J., et al. (2025) · Cell Discovery · doi:10.1038/s41421-025-00821-0 · Cited by 7

Nanorate sequencing reveals the Arabidopsis somatic mutation landscape

Meyer, C. A., Nelms, B. D., & Schmitz, R. J. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2514194122 · Cited by 9

Identification of Differentially Methylated Regions in the Genome of Arabidopsis thaliana

Kishore, K., & Pelizzola, M. (2017) · Methods in molecular biology · doi:10.1007/978-1-4939-7318-7_4 · Cited by 7

Small regulatory RNAs in rice epigenetic regulation

Park, S. Y., Cho, J., & Jeong, D. (2022) · Biochemical Society Transactions · doi:10.1042/bst20210336 · Cited by 7

Mechanistic insights into UHRF1‑mediated DNA methylation by structure‑based functional clarification of UHRF1 domains (Review)

Song, Y., Liu, H., Xian, Q., Gui, C., Xu, M., & Zhou, Y. (2023) · Oncology Letters · doi:10.3892/ol.2023.14129 · Cited by 7

Dynamic evolution of the heterochromatin sensing histone demethylase IBM1

Zhang, Y., Jang, H., Luo, Z., Dong, Y.-X., Xu, Y., Kantamneni, Y., & Schmitz, R. J. (2024) · PLoS Genetics · doi:10.1371/journal.pgen.1011358 · Cited by 7

Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina

Yuan, Y., Biswas, P., Zemke, N. R., Dang, K., Wu, Y., D’Antonio, M., Xie, Y., Yang, Q., Dong, K., Lau, P. K., et al. (2026) · Science Advances · doi:10.1126/sciadv.adv9162 · Cited by 7

DNA Methylation Profile of Psoriatic Skins from Different Body Locations

Wu, M., Li, X., Zhang, C., Zhang, C., Qian, D., Ma, J., Cai, M., Tang, L., Cheng, H., Shen, C., et al. (2019) · Epigenomics · doi:10.2217/epi-2018-0225 · Cited by 7

DNA methylation profiling in early lung adenocarcinoma to predict response to immunotherapy

Smet, C. D. (2023) · Translational Lung Cancer Research · doi:10.21037/tlcr-23-96 · Cited by 7

Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource

Nanan, K. K., Ocheltree, C., Sturgill, D. M., Mandler, M. D., Prigge, M. F., Varma, G., & Oberdoerffer, S. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx900 · Cited by 7

5-Azacytidine Transiently Restores Dysregulated Erythroid Differentiation Gene Expression in TET2-Deficient Erythroleukemia Cells

Reilly, B. M., Luger, T., Park, S., Lio, C. J., González‐Avalos, E., Wheeler, E. C., Lee, M., Williamson, L. M., Tanaka, T. N., Diep, D. H., et al. (2020) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-20-0453 · Cited by 7

Identification of LINC00173 in Myasthenia Gravis by Integration Analysis of Aberrantly Methylated- Differentially Expressed Genes and ceRNA Networks

Xu, S., Wang, T., Lu, X., Zhang, H., Liu, L., Kong, X., Li, S., Wang, X., Gao, H., Wang, J., et al. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.726751 · Cited by 7

Firefly genomes illuminate parallel origins of bioluminescence in beetlesPreprint

Fallon, T. R., Lower, S. E., Chang, C.-H., Bessho‐Uehara, M., Martin, G. J., Bewick, A. J., Behringer, M. G., Debat, H., Wong, I., Day, J. C., et al. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/237586 · Cited by 7

X chromosome genetic data in a Spanish children cohort, dataset description and analysis pipeline

Anguita‐Ruiz, A., Plaza‐Díaz, J., Ruiz‐Ojeda, F. J., Rupérez, A. I., Leis, R., Bueno, G., Gil‐Campos, M., Vázquez‐Cobela, R., Cañete, R., Moreno, L. A., et al. (2019) · Scientific Data · doi:10.1038/s41597-019-0109-3 · Cited by 8

Epigenome erosion in Alzheimer’s disease brain cells and induced neuronsPreprint

Wang, B.-A., Jones, J. R., Zhou, J., Tian, W., Wu, Y., Wang, W., Berube, P., Bartlett, A., Castanon, R., Nery, J. R., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.10.15.562394 · Cited by 8

Epigenetic differentiation of monozygotic twins in forensic investigations using nanopore sequencing

Zeng, K., Yang, K., Du, J., Rakha, A., Liu, Z., Wang, D., Chen, Y.-Z., Wang, S., Sun, M.-L., Wang, H., et al. (2025) · Forensic Science International Genetics · doi:10.1016/j.fsigen.2025.103344 · Cited by 6

Single-cell profiling of DNA methylation in autism spectrum disorder prefrontal cortex reveals distinct regulatory and aging signatures

Eyring, K. W., Liu, C., Elhajjaoui, N., Abuhanna, K. D., Zhang, Y., von Behren, Z., Tsai, M. J., Eskin, E., Geschwind, D. H., & Luo, C. (2026) · Cell Genomics · doi:10.1016/j.xgen.2026.101278 · Cited by 6

Cross-tissue patterns of DNA hypomethylation reveal genetically distinct histories of cell development

Scott, T. J., Hansen, T. J., McArthur, E., & Hodges, E. C. (2023) · BMC Genomics · doi:10.1186/s12864-023-09622-9 · Cited by 7

DNA methylation stability in cardiac tissues kept at different temperatures and time intervals

Poggiali, B., Dupont, M. E., Jacobsen, S. B., Smerup, M., Christiansen, S. N. N., Tfelt‐Hansen, J., Vidaki, A., Morling, N., & Andersen, J. D. (2024) · Scientific Reports · doi:10.1038/s41598-024-76027-3 · Cited by 6

A multi-step genomic approach prioritized TBKBP1 gene as relevant for multiple sclerosis susceptibility

Sorosina, M., Barizzone, N., Clarelli, F., Anand, S. K., Lupoli, S., Salvi, E., Mangano, E., Bordoni, R., Roostaei, T., Mascia, E., et al. (2022) · Journal of Neurology · doi:10.1007/s00415-022-11109-8 · Cited by 6

Unraveling the DNA methylation landscape in dog blood across breeds

Nakamura, M., Matsumoto, Y., Yasuda, K., Nagata, M., Nakaki, R., Okumura, M., & Yamazaki, J. (2024) · BMC Genomics · doi:10.1186/s12864-024-10963-2 · Cited by 6

Therapy of Infectious Diseases Using Epigenetic Approaches

Zhou, Z., Rajasingh, S., Barani, B., Samanta, S., Dawn, B., Wang, R., & Rajasingh, J. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-812215-0.00022-4 · Cited by 6

Prediction of the Prognosis Based on Chromosomal Instability-Related DNA Methylation Patterns of ELOVL2 and UBAC2 in PTCs

Han, J., Chen, M., Fang, Q., Zhang, Y., Wang, Y., Jamaspishvili, E., & Qiao, H. (2019) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2019.09.027 · Cited by 6

Telomere and Telomerase: Biological Markers of Organic Vital Force State and Homeopathic Treatment Effectiveness

Teixeira, M. Z. (2021) · Homeopathy · doi:10.1055/s-0041-1726008 · Cited by 6

RTEL1 is required for silencing and epigenome stability

Olivier, M., Hesketh, A., Pouch-Pélissier, M.-N., Pélissier, T., Huang, Y., Latrasse, D., Benhamed, M., & Mathieu, O. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad610 · Cited by 6

Implications of Genotype and Environment on Variation in DNA Methylation

Lim, I. Y., Lin, X., & Karnani, N. (2017) · Springer eBooks · doi:10.1007/978-3-319-31143-2_56-1 · Cited by 6

Dynamic DNA methylation contributes to carryover effects and beneficial acclimatization in geoduck clamsPreprint

Putnam, H. M., Trigg, S. A., White, S. J., Spencer, L. H., Vadopalas, B., Natarajan, A., Hetzel, J., Jaeger, E. B., Soohoo, J., Gallardo‐Escárate, C., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.06.24.497506 · Cited by 6

DNA methylation in fish of the cichlid family: A systematic review

Welengane, E., Frade, L. F. D. S., Pinon, L. B. S., dos Santos, C. E. V., Cardoso, A. L., do Nascimento, L. A. S., & Noronha, R. C. R. (2025) · Heliyon · doi:10.1016/j.heliyon.2025.e42626 · Cited by 5

Methylation Data Analysis and Interpretation

Zhu, Y., Mao, W., Hosseini, R., & Chikina, M. D. (2025) · Annual Review of Biomedical Data Science · doi:10.1146/annurev-biodatasci-120924-091033 · Cited by 6

Exploring transcriptional and post-transcriptional epigenetic regulation of crf and 11βhsd2 in rainbow trout brain during chronic social stress

Best, C., Mennigen, J. A., & Gilmour, K. M. (2023) · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · doi:10.1016/j.cbpa.2023.111557 · Cited by 5

Non‐Random Distribution of EMS‐Induced Mutations Reveals Preference for Open Chromatin and Expressed Genes in Rice

Yao, X., Liu, Y., Li, Z., Jiang, G., Wang, W., Lu, H., Li, H., Lu, Z., & Liu, C. (2025) · Advanced Science · doi:10.1002/advs.202510034 · Cited by 5

Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard

Lin, Y., Breuer, K., Weichenhan, D., Lafrenz, P., Sarnataro, A., Wilk, A., Chepeleva, M., Mücke, O., Schönung, M., Petermann, F., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf970 · Cited by 5

High‐throughput single‐cell DNA methylation and chromatin accessibility co‐profiling with SpliCOOL‐seq

qingmei, S., Deng, E., Luo, L., Zhang, J., Yang, Q., Su, D., & Fan, X. (2026) · Clinical and Translational Medicine · doi:10.1002/ctm2.70584 · Cited by 5

Prediction of tissue origin of adenocarcinomas in the esophagogastric junction by DNA methylation

Zhang, C., Takeshima, H., Sekine, S., Yamashita, S., Liu, Y.-Y., Hattori, N., Abé, H., Yamashita, H., Fukuda, M., Imamura, Y., et al. (2021) · Gastric Cancer · doi:10.1007/s10120-021-01252-y · Cited by 5

Features of the interactions between the methyl-CpG motif and the arginine residues on the surface of MBD proteins

Mezei, P. D., & Csonka, G. I. (2016) · Structural Chemistry · doi:10.1007/s11224-016-0783-0 · Cited by 5

Epigenetic reprogramming in the embryo

Huntriss, J. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-819753-0.00006-4 · Cited by 7

Databases and prospects of dynamic gene regulation in eukaryotes: A mini review

Chow, C.-N., Yang, C.-W., & Chang, W. (2023) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2023.03.032 · Cited by 6

Epigenome Mapping of Human Normal Purified Hepatocytes: Personal Epigenome Variation and Genome–Epigenome Correlation

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The gene expression profiling of hepatocellular carcinoma by a network analysis approach shows a dominance of intrinsically disordered proteins (IDPs) between hub nodes

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