Mukamel, Eran A.

Global epigenomic reconfiguration during mammalian brain development

Lister, R., Mukamel, E. A., Nery, J. R., Urich, M., Puddifoot, C. A., Johnson, N. D., Lucero, J., Huang, Y., Dwork, A. J., Schultz, M. D., et al. (2013) · Science

Epigenetics and DNA MethylationGenetic Syndromes and Imprinting

Cited by 1,830

Electroencephalogram signatures of loss and recovery of consciousness from propofol

Purdon, P. L., Pierce, E. T., Mukamel, E. A., Prerau, M. J., Walsh, J. L., Wong, K. F. K., Salazar-Gomez, A. F., Harrell, P. G., Sampson, A. L., Cimenser, A., et al. (2013) · Proceedings of the National Academy of Sciences

Anesthesia and Sedative AgentsNeural dynamics and brain function

Cited by 854

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Bakken, T. E., Jorstad, N. L., Hu, Q., Lake, B. B., Tian, W., Kalmbach, B. E., Crow, M., Hodge, R. D., Krienen, F. M., Sorensen, S. A., et al. (2021) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 812

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

Bakken, T. E., Jorstad, N. L., Hu, Q., Lake, B. B., Tian, W., Kalmbach, B. E., Crow, M., Hodge, R. D., Krienen, F. M., Sorensen, S. A., et al. (2020) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 809

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

Mo, A., Mukamel, E. A., Davis, F. P., Luo, C., Henry, G. L., Picard, S., Urich, M. A., Nery, J. R., Sejnowski, T. J., Lister, R., et al. (2015) · Neuron

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 739

Human body epigenome maps reveal noncanonical DNA methylation variation

Schultz, M. D., He, Y., Whitaker, J. W., Hariharan, M., Mukamel, E. A., Leung, D., Rajagopal, N., Nery, J. R., Urich, M. A., Chen, H., et al. (2015) · Nature

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 690

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

Luo, C., Keown, C. L., Kurihara, L., Zhou, J., He, Y., Li, J., Castanon, R., Lucero, J., Nery, J. R., Sandoval, J. P., et al. (2017) · Science

Epigenetics and DNA MethylationSingle-cell and spatial transcriptomics

Cited by 545

A multimodal cell census and atlas of the mammalian primary motor cortex

BRAIN Initiative Cell Census Network (BICCN), BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Callaway, E. M., Dong, H.-W., Ecker, J. R., Hawrylycz, M. J., Huang, Z. J., Lein, E. S., Ngai, J., Osten, P., et al. (2021) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 522

Comprehensive analysis of single cell ATAC-seq data with SnapATAC

Fang, R., Preissl, S., Li, Y., Hou, X., Lucero, J., Wang, X., Motamedi, A., Shiau, A. K., Zhou, X., Xie, F., et al. (2021) · Nature Communications

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 455

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Yao, Z., Liu, H., Xie, F., Fischer, S., Adkins, R. S., Aldridge, A. I., Ament, S. A., Bartlett, A., Behrens, M. M., Van den Berge, K., et al. (2021) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 398

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Yao, Z., Liu, H., Xie, F., Fischer, S., Booeshaghi, A. S., Adkins, R. S., Aldridge, A. I., Ament, S. A., Pinto-Duarte, A., Bartlett, A., et al. (2020) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 397

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

Liu, H., Zhou, J., Tian, W., Luo, C., Bartlett, A., Aldridge, A., Lucero, J., Osteen, J. K., Nery, J. R., Chen, H., et al. (2020) · Nature

Single-cell and spatial transcriptomicsEpigenetics and DNA Methylation

Cited by 290

DNA methylation atlas of the mouse brain at single-cell resolution

Liu, H., Zhou, J., Tian, W., Luo, C., Bartlett, A., Aldridge, A., Lucero, J., Osteen, J. K., Nery, J. R., Chen, H., et al. (2021) · Nature

Single-cell and spatial transcriptomicsEpigenetics and DNA Methylation

Cited by 289

Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes

Armand, E. J., Li, J., Xie, F., Luo, C., & Mukamel, E. A. (2021) · Neuron

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 241

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

Li, Y. E., Preissl, S., Hou, X., Zhang, Z., Zhang, K., Fang, R., Qiu, Y., Poirion, O., Li, B., Liu, H., et al. (2020) · Nature

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 187

An atlas of gene regulatory elements in adult mouse cerebrum

Li, Y. E., Preissl, S., Hou, X., Zhang, Z., Zhang, K., Qiu, Y., Poirion, O. B., Li, B., Chiou, J., Liu, H., et al. (2021) · Nature

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 185

A unique role for DNA (hydroxy)methylation in epigenetic regulation of human inhibitory neurons

Kozlenkov, A., Li, J., Apontes, P., Hurd, Y. L., Byne, W. M., Koonin, E. V., Wegner, M., Mukamel, E. A., & Dracheva, S. (2018) · Science Advances

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 103

Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders

Barnes, S. A., Pinto-Duarte, A., Kappe, A., Zembrzycki, A., Metzler, A., Mukamel, E. A., Lucero, J., Wang, X., Sejnowski, T. J., Markou, A., et al. (2015) · Molecular Psychiatry

Neuroscience and Neuropharmacology ResearchGenetics and Neurodevelopmental Disorders

Cited by 92

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

Zhang, Z., Zhou, J., Tan, P., Pang, Y., Rivkin, A., Kirchgessner, M. A., Williams, E., Lee, C.-T., Liu, H., Franklin, A. D., et al. (2020) · Nature

Single-cell and spatial transcriptomicsEpigenetics and DNA Methylation

Cited by 75

Perspectives on defining cell types in the brain

Mukamel, E. A., & Ngai, J. (2019) · Current Opinion in Neurobiology

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 56

Evolution of regulatory signatures in primate cortical neurons at cell-type resolution

Kozlenkov, A., Vermunt, M. W., Apontes, P., Li, J., Hao, K., Sherwood, C. C., Hof, P. R., Ely, J. J., Wegner, M., Mukamel, E. A., et al. (2020) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 30