The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Paleoproterozoic sterol biosynthesis and the rise of oxygen
Open accessAbstract
Natural products preserved in the geological record can function as 'molecular fossils', providing insight into organisms and physiologies that existed in the deep past. One important group of molecular fossils is the steroidal hydrocarbons (steranes), which are the diagenetic remains of sterol lipids. Complex sterols with modified side chains are unique to eukaryotes, although simpler sterols can also be synthesized by a few bacteria. Sterol biosynthesis is an oxygen-intensive process; thus, the presence of complex steranes in ancient rocks not only signals the presence of eukaryotes, but also aerobic metabolic processes. In 1999, steranes were reported in 2.7 billion year (Gyr)-old rocks from the Pilbara Craton in Australia, suggesting a long delay between photosynthetic oxygen production and its accumulation in the atmosphere (also known as the Great Oxidation Event) 2.45-2.32 Gyr ago. However, the recent reappraisal and rejection of these steranes as contaminants pushes the oldest reported steranes forward to around 1.64 Gyr ago (ref. 6). Here we use a molecular clock approach to improve constraints on the evolution of sterol biosynthesis. We infer that stem eukaryotes shared functionally modern sterol biosynthesis genes with bacteria via horizontal gene transfer. Comparing multiple molecular clock analyses, we find that the maximum marginal probability for the divergence time of bacterial and eukaryal sterol biosynthesis genes is around 2.31 Gyr ago, concurrent with the most recent geochemical evidence for the Great Oxidation Event. Our results therefore indicate that simple sterol biosynthesis existed well before the diversification of living eukaryotes, substantially predating the oldest detected sterane biomarkers (approximately 1.64 Gyr ago), and furthermore, that the evolutionary history of sterol biosynthesis is tied to the first widespread availability of molecular oxygen in the ocean-atmosphere system.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Very recent evidence from phylogenetic analysis targeting sterol biosynthesis, an O2-requiring process, places the stem eukaryote split around the GOE (Gold et al., 2017)”
From Oxygenation, Life, and the Planetary System during Earth's Middle History: An Overview (2021) · cites this paper as Gold et al., 2017
Citations
Cites
MrBayes 3: Bayesian phylogenetic inference under mixed models
Ronquist, F., & Huelsenbeck, J. P. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg180 · Cited by 29,194
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Stamatakis, A. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl446 · Cited by 15,582
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Sievers, F., Wilm, A., Dineen, D., Gibson, T., Karplus, K., Li, W.-Z., Lopez, R., McWilliam, H., Remmert, M., Söding, J., et al. (2011) · Molecular Systems Biology · doi:10.1038/msb.2011.75 · Cited by 15,576
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss075 · Cited by 10,114
The Pfam protein families database: towards a more sustainable future
Finn, R. D., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Mistry, J., Mitchell, A. L., Potter, S. C., Punta, M., Qureshi, M., Sangrador-Vegas, A., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1344 · Cited by 5,975
The rise of oxygen in Earth's early ocean and atmosphere
Lyons, T. W., Reinhard, C. T., & Planavsky, N. J. (2014) · Nature · doi:10.1038/nature13068 · Cited by 2,810
(2017) · Palaeontologia Electronica · doi:10.26879/suffix · Cited by 2,540
Atmospheric Influence of Earth's Earliest Sulfur Cycle
Farquhar, J., Bao, H., & Thiemens, M. (2000) · Science · doi:10.1126/science.289.5480.756 · Cited by 1,805
Dating the rise of atmospheric oxygen
Bekker, A., Holland, H. D., Wang, P.-L., Rumble, D., Stein, H. J., Hannah, J. L., Coetzee, L. L., & Beukes, N. J. (2004) · Nature · doi:10.1038/nature02260 · Cited by 1,435
Archean Molecular Fossils and the Early Rise of Eukaryotes
Brocks, J. J., Logan, G. A., Buick, R., & Summons, R. E. (1999) · Science · doi:10.1126/science.285.5430.1033 · Cited by 1,275
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Items 101–130 of 130
Schlesinger, W. H., & Bernhardt, E. S. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-814608-8.00002-5
Summons, R. E. (2017) · Encyclopedia of earth sciences series/Encyclopedia of earth sciences · doi:10.1007/978-3-319-39193-9_191-1
Self-citationVolkman, J. K. (2017) · Encyclopedia of earth sciences series/Encyclopedia of earth sciences · doi:10.1007/978-3-319-39193-9_149-1
(2020) · Elsevier eBooks · doi:10.1016/b978-0-12-814608-8.09992-8
Eukaryotes, Appearance and Early Evolution of
Javaux, E. (2021) · Encyclopedia of Astrobiology · doi:10.1007/978-3-642-27833-4_538-4
The Eukaryotic Last Common Ancestor Was Bifunctional for Hopanoid and Sterol ProductionPreprint
Francis, W. R. (2020) · Preprints.org · doi:10.20944/preprints202004.0186.v1
The Eukaryotic Last Common Ancestor Was Bifunctional for Hopanoid and Sterol ProductionPreprint
Francis, W. R. (2022) · Preprints.org · doi:10.20944/preprints202004.0186.v4
Zhang, S., Wang, X., Wang, H., Tang, Q., Zhang, F., & Lü, D. (2022) · Earth Science-Journal of China University of Geosciences · doi:10.3799/dqkx.2022.839
Les oscillations harmoniques des rythmes circadiens sortent de l’ombre
Teboul, M., & Delaunay, F. (2023) · médecine/sciences · doi:10.1051/medsci/2023079
Eukaryotes, Appearance and Early Evolution of
Javaux, E. (2023) · Encyclopedia of Astrobiology · doi:10.1007/978-3-662-65093-6_538
What are the Limiting Environmental Factors for the Evolution of Early Eukaryotic Diversity?
Zhang, S., Wang, X., Wang, H., Tang, Q., Zhang, F., & Lü, D. (2023) · Journal of Earth Science · doi:10.1007/s12583-023-1876-5
Imbalances: Sources of All Change
Knoflacher, M. (2024) · Springer eBooks · doi:10.1007/978-3-662-69423-7_8
Zou, C. (2024) · Springer eBooks · doi:10.1007/978-981-97-6651-2_4
Wang, P., Wu, T.-Y., Chen, Y., Gicana, R. G., Lee, T., Chen, M., Hsiao, T., Lu, M. J., Lai, Y.-L., Wang, T., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.24.619986
Adl, S. M. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-95299-6.00012-3
Additional file 2 of Viral histones: pickpocket’s prize or primordial progenitor?
Talbert, P. B., Armache, K.-J., & Henikoff, S. (2022) · Figshare · doi:10.6084/m9.figshare.19915354
Brown, M. O., & Welander, P. V. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.19.695621
Cholesterol: an ancient ally or modern menace?
Luna-Reyes, I., Villa-Jaimes, S., Calixto-Tlacomulco, S., Pérez-Hernández, E. G., Montalvan‐Sorrosa, D., Reyes‐Grajeda, J. P., & Mas‐Oliva, J. (2026) · Royal Society Open Science · doi:10.1098/rsos.250853
Bacterial Hopanoid and Steroid Biosynthesis, Function, Evolution, and Diagenesis
Elling, F. J., & Hoshino, Y. (2026) · Springer eBooks · doi:10.1007/978-3-319-43676-0_66-1
白, 江., 苗, 晓., 管, 红., 李, 勇., 吴, 昊., 卢, 锡., 南, 航., 冯, 小., 韦, 刚., & 李, 三. (2026) · SCIENTIA SINICA Terrae · doi:10.1360/n072025-0649
Bai, J., Miao, X., Guan, H., Li, Y., Wu, H., Lu, X., Nan, H., Feng, X., Wei, G., & Li, S. (2026) · Science China Earth Sciences · doi:10.1007/s11430-025-1899-9
Vase‐Shaped Microfossils From North China Suggest an Earlier Origin of Protozoa at ~1.56 Ga
Liu, J., Zhang, Y. X., Shi, X., Chen, A., & Tang, D. (2026) · Geological Journal · doi:10.1002/gj.70394
On the timing of eukaryotic origin
Song, N., Pang, K., Feng, X., & Li, M. (2026) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1002/brv.70201
Understanding cancer from the perspective of cellular adaptation to stressors for survival
Huang, Z., Mu, X., & Xu, Y. (2026) · Quantitative Biology · doi:10.1002/qub2.70048
Wyatt, G. J., Yasmin, F., Donaldson, A. R., Schumaker, S. L., Gueorguieva, G.-A. V., & Zerbe, P. (2026) · Natural Product Reports · doi:10.1039/d6np00035e
Volkman, J. K. (2018) · Encyclopedia of earth sciences series/Encyclopedia of earth sciences · doi:10.1007/978-3-319-39312-4_149
Water–Organic Interfaces Drive Molecular Evolution from Squalene to Steroids
Lyu, L., Xu, J., Qian, N., Zhang, B., Min, W., Song, X., & Zare, R. N. (2026) · Journal of the American Chemical Society · doi:10.1021/jacs.6c16394
Metadata
- Authors
- Gold, D. A., Caron, A., Fournier, G. P., & Summons, R. E.
- Affiliations
- Massachusetts Institute of Technology (US)
- Corresponding author
- Summons, Roger E.
- Venue
- Nature
- Published
- 2017-03
- Volume
- 543
- Issue
- 7645
- Pages
- 420-423
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2594412381
- Cited by
- 129
- References
- 34
- Citations by year
- 2026: 11 · 2025: 10 · 2024: 8 · 2023: 19 · 2022: 11 · 2021: 15 · 2020: 18 · 2019: 13 · 2018: 18 · 2017: 6
- FWCI
- 10.26
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- CaltechAUTHORS (California Institute of Technology) (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc-sa)
- Funders
- National Science Foundation (1338810)
- Simons Foundation
- Agouron Institute (1338810)
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Paleontology and Stratigraphy of Fossils
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Keywords
- steranes, sterol biosynthesis, Great Oxidation Event, atmospheric oxygenation, horizontal gene transfer, molecular fossils, molecular clock, divergence time estimation, Pilbara Craton, early eukaryotes, Precambrian geochemistry
- MeSH terms
- Atmosphere, Bacteria, Oceans and Seas, Oxygen, Phylogeny, Seawater, Sterols, Gene Transfer, Horizontal, Synteny, History, Ancient, Eukaryota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review