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Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
Open accessAbstract
Pseudomonas fluorescens Pf-5 is a plant commensal bacterium that inhabits the rhizosphere and produces secondary metabolites that suppress soilborne plant pathogens. The complete sequence of the 7.1-Mb Pf-5 genome was determined. We analyzed repeat sequences to identify genomic islands that, together with other approaches, suggested P. fluorescens Pf-5's recent lateral acquisitions include six secondary metabolite gene clusters, seven phage regions and a mobile genomic island. We identified various features that contribute to its commensal lifestyle on plants, including broad catabolic and transport capabilities for utilizing plant-derived compounds, the apparent ability to use a diversity of iron siderophores, detoxification systems to protect from oxidative stress, and the lack of a type III secretion system and toxins found in related pathogens. In addition to six known secondary metabolites produced by P. fluorescens Pf-5, three novel secondary metabolite biosynthesis gene clusters were also identified that may contribute to the biocontrol properties of P. fluorescens Pf-5.
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Cites
Fast algorithms for large-scale genome alignment and comparison
Delcher, A. L. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.11.2478 · Cited by 1,036
Cited by
Compant, S., Clément, C., & Sessitsch, A. (2010) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2009.11.024 · Cited by 2,318
Raaijmakers, J. M., De Bruijn, I., Nybroe, O., & Ongena, M. (2010) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2010.00221.x · Cited by 1,131
Chen, X. H., Koumoutsi, A., Scholz, R., Eisenreich, A., Schneider, K., Heinemeyer, I., Morgenstern, B., Voss, B., Hess, W. R., Reva, O., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1325 · Cited by 873
Plant growth promotion induced by phosphate solubilizing endophytic Pseudomonas isolates
Oteino, N., Lally, R. D., Kiwanuka, S., Lloyd, A., Ryan, D., Germaine, K. J., & Dowling, D. N. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00745 · Cited by 787
Plant root-microbe communication in shaping root microbiomes
Lareen, A., Burton, F., & Schäfer, P. (2016) · Plant Molecular Biology · doi:10.1007/s11103-015-0417-8 · Cited by 668
Metadata
- Authors
- Paulsen, I. T., Press, C. M., Ravel, J., Kobayashi, D. Y., Myers, G. S. A., Mavrodi, D. V., DeBoy, R. T., Seshadri, R., Ren, Q., Madupu, R., Dodson, R. J., Durkin, A. S., Brinkac, L. M., Daugherty, S. C., Sullivan, S. A., Rosovitz, M. J., Gwinn, M. L., Zhou, L., Schneider, D. J., Cartinhour, S. W., Nelson, W. C., Weidman, J., Watkins, K., Tran, K., Khouri, H., Pierson, E. A., Pierson, L. S., Thomashow, L. S., & Loper, J. E.
- Venue
- Nature Biotechnology
- Published
- 2005-07-01
- Volume
- 23
- Issue
- 7
- Pages
- 873-878
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W2148615699
- Cited by
- 653
- References
- 1
- FWCI
- 48.95
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- The paper
- Paulsen, I. T., Press, C. M., Ravel, J., Kobayashi, D. Y., Myers, G. S. A., Mavrodi, D. V., DeBoy, R. T., Seshadri, R., Ren, Q., Madupu, R., Dodson, R. J., Durkin, A. S., Brinkac, L. M., Daugherty, S. C., Sullivan, S. A., Rosovitz, M. J., Gwinn, M. L., Zhou, L., Schneider, D. J., . . . Loper, J. E. (2005). Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nature Biotechnology. https://doi.org/10.1038/nbt1110
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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