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Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris
Open accessAbstract
Rhodopseudomonas palustris is among the most metabolically versatile bacteria known. It uses light, inorganic compounds, or organic compounds, for energy. It acquires carbon from many types of green plant-derived compounds or by carbon dioxide fixation, and it fixes nitrogen. Here we describe the genome sequence of R. palustris, which consists of a 5,459,213-base-pair (bp) circular chromosome with 4,836 predicted genes and a plasmid of 8,427 bp. The sequence reveals genes that confer a remarkably large number of options within a given type of metabolism, including three nitrogenases, five benzene ring cleavage pathways and four light harvesting 2 systems. R. palustris encodes 63 signal transduction histidine kinases and 79 response regulator receiver domains. Almost 15% of the genome is devoted to transport. This genome sequence is a starting point to use R. palustris as a model to explore how organisms integrate metabolic modules in response to environmental perturbations.
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Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
Ewing, B., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.186 · Cited by 5,439
Structure–function relationships of alternative nitrogenases
Eady, R. R. (1996) · Chemical Reviews · doi:10.1021/cr950057h · Cited by 877
Cited by
Anderson, C. R., Condron, L. M., Clough, T. J., Fiers, M., Stewart, A., Hill, R. A., & Sherlock, R. R. (2011) · Pedobiologia · doi:10.1016/j.pedobi.2011.07.005 · Cited by 768
The iron-oxidizing proteobacteria
Hedrich, S., Schlömann, M., & Johnson, D. B. (2011) · Microbiology · doi:10.1099/mic.0.045344-0 · Cited by 616
Anaerobic Microbial Dehalogenation
Smidt, H., & de Vos, W. M. (2004) · Annual Review of Microbiology · doi:10.1146/annurev.micro.58.030603.123600 · Cited by 434
The genome sequence of the extreme thermophile Thermus thermophilus
Henne, A., Brüggemann, H., Raasch, C., Wiezer, A., Hartsch, T., Liesegang, H., Johann, A., Lienard, T., Gohl, O., Martinez-Arias, R., et al. (2004) · Nature Biotechnology · doi:10.1038/nbt956 · Cited by 384
When did oxygenic photosynthesis evolve?
Buick, R. (2008) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2008.0041 · Cited by 352
Metadata
- Authors
- Larimer, F. W., Chain, P., Hauser, L., Lamerdin, J., Malfatti, S., Do, L., Land, M. L., Pelletier, D. A., Beatty, J. T., Lang, A. S., Tabita, F. R., Gibson, J. L., Hanson, T. E., Bobst, C., Torres, J. L. T. Y., Peres, C., Harrison, F. H., Gibson, J., & Harwood, C. S.
- Venue
- Nature Biotechnology
- Published
- 2003-12-14
- Volume
- 22
- Issue
- 1
- Pages
- 55-61
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W2093560200
- Cited by
- 761
- References
- 2
- FWCI
- 12.22
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Larimer, F. W., Chain, P., Hauser, L., Lamerdin, J., Malfatti, S., Do, L., Land, M. L., Pelletier, D. A., Beatty, J. T., Lang, A. S., Tabita, F. R., Gibson, J. L., Hanson, T. E., Bobst, C., Torres, J. L. T. Y., Peres, C., Harrison, F. H., Gibson, J., & Harwood, C. S. (2004). Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nature Biotechnology. https://doi.org/10.1038/nbt923
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