The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
The genome of Prunus mume
Open accessAbstract
Prunus mume (mei), which was domesticated in China more than 3,000 years ago as ornamental plant and fruit, is one of the first genomes among Prunus subfamilies of Rosaceae been sequenced. Here, we assemble a 280M genome by combining 101-fold next-generation sequencing and optical mapping data. We further anchor 83.9% of scaffolds to eight chromosomes with genetic map constructed by restriction-site-associated DNA sequencing. Combining P. mume genome with available data, we succeed in reconstructing nine ancestral chromosomes of Rosaceae family, as well as depicting chromosome fusion, fission and duplication history in three major subfamilies. We sequence the transcriptome of various tissues and perform genome-wide analysis to reveal the characteristics of P. mume, including its regulation of early blooming in endodormancy, immune response against bacterial infection and biosynthesis of flower scent. The P. mume genome sequence adds to our understanding of Rosaceae evolution and provides important data for improvement of fruit trees. The Prunus mume was domesticated in China over 3,000 years ago and is an important ornamental plant and fruit. Here Qixiang Zhang et al.obtain the first assembly of its genome with a combination of next-generation sequencing, whole-genome mapping and restriction-site-associated DNA.
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Trapnell, C., Williams, B. A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M. J., Salzberg, S. L., Wold, B. J., & Pachter, L. (2010) · Nature Biotechnology · doi:10.1038/nbt.1621 · Cited by 15,556
Tandem repeats finder: a program to analyze DNA sequences
Benson, G. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.2.573 · Cited by 9,374
<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool
Kent, W. J. (2002) · Genome Research · doi:10.1101/gr.229202 · Cited by 8,480
De novo assembly of human genomes with massively parallel short read sequencing
Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., et al. (2010) · Genome Research · doi:10.1101/gr.097261.109 · Cited by 2,926
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The complex jujube genome provides insights into fruit tree biology
Liu, M.-J., Zhao, J., Cai, Q.-L., Liu, G.-C., Wang, J.-R., Zhao, Z.-H., Liu, P., Dai, L., Yan, G., Wang, W.-J., et al. (2014) · Nature Communications · doi:10.1038/ncomms6315 · Cited by 358
Self-citationThe genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding
Shirasawa, K., Isuzugawa, K., Ikenaga, M., Saito, Y., Yamamoto, T., Hirakawa, H., & Isobe, S. (2017) · DNA Research · doi:10.1093/dnares/dsx020 · Cited by 294
Advances in genomics for adapting crops to climate change
Scheben, A., Yuan, Y., & Edwards, D. (2016) · Current Plant Biology · doi:10.1016/j.cpb.2016.09.001 · Cited by 117
The vast majority of somatic mutations in plants are layer-specific
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Metadata
- Authors
- Zhang, Q., Chen, W., Sun, L., Zhao, F., Huang, B., Yang, W., Tao, Y., Wang, J., Yuan, Z., Fan, G., Xing, Z., Han, C., Pan, H., Zhong, X., Shi, W., Liang, X., Du, D., Sun, F., Xu, Z., Hao, R., Lv, T., Lv, Y., Zheng, Z., Sun, M., Luo, L., Cai, M., Gao, Y., Wang, J., Yin, Y., Xu, X., Cheng, T., & Wang, J.
- Venue
- Nature Communications
- Published
- 2012-12-27
- Volume
- 3
- Issue
- 1
- Pages
- 1318-1318
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W1964436754
- Cited by
- 478
- References
- 4
- FWCI
- 25.38
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Zhang, Q., Chen, W., Sun, L., Zhao, F., Huang, B., Yang, W., Tao, Y., Wang, J., Yuan, Z., Fan, G., Xing, Z., Han, C., Pan, H., Zhong, X., Shi, W., Liang, X., Du, D., Sun, F., Xu, Z., . . . Wang, J. (2012). The genome of Prunus mume. Nature Communications. https://doi.org/10.1038/ncomms2290
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