The DOI matches its Crossref record; 42 of the 42 references it cites were found in a registry or an index.
Genome sequence of the date palm Phoenix dactylifera L
Open accessAbstract
Date palm (Phoenix dactylifera L.) is a cultivated woody plant species with agricultural and economic importance. Here we report a genome assembly for an elite variety (Khalas), which is 605.4 Mb in size and covers >90% of the genome (~671 Mb) and >96% of its genes (~41,660 genes). Genomic sequence analysis demonstrates that P. dactylifera experienced a clear genome-wide duplication after either ancient whole genome duplications or massive segmental duplications. Genetic diversity analysis indicates that its stress resistance and sugar metabolism-related genes tend to be enriched in the chromosomal regions where the density of single-nucleotide polymorphisms is relatively low. Using transcriptomic data, we also illustrate the date palm’s unique sugar metabolism that underlies fruit development and ripening. Our large-scale genomic and transcriptomic data pave the way for further genomic studies not only on P. dactylifera but also other Arecaceae plants. The date palm is one of the most economically important plants of the palm family. Here, the authors present a high-quality genome assembly of the date palm Phoenix dactylifera, and reveal insights into the unique sugar metabolism underlying fruit ripening.
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The Sequence Alignment/Map format and SAMtools
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A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )
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Self-citationKAAS: an automatic genome annotation and pathway reconstruction server
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., & Kanehisa, M. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm321 · Cited by 4,153
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Cited by
Date Palm Tree (Phoenix dactylifera L.): Natural Products and Therapeutic Options
Al-Alawi, R. A., Al-Mashiqri, J. H., Al-Nadabi, J. S. M., Al-Shihi, B. I., & Baqi, Y. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.00845 · Cited by 336
Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots
Jiao, Y., Li, J., Tang, H., & Paterson, A. H. (2014) · The Plant Cell · doi:10.1105/tpc.114.127597 · Cited by 267
Mirani, A. A., Teo, C. H., Markhand, G. S., Abul-Soad, A. A., & Harikrishna, J. A. (2020) · Plant Cell, Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-020-01772-y · Cited by 39
Metadata
- Authors
- Al-Mssallem, I. S., Hu, S., Zhang, X., Lin, Q., Liu, W., Tan, J., Yu, X., Liu, J., Pan, L., Zhang, T., Yin, Y., Xin, C., Wu, H., Zhang, G., Ba Abdullah, M. M., Huang, D., Fang, Y., Alnakhli, Y. O., Jia, S., Yin, A., Alhuzimi, E. M., Alsaihati, B. A., Al-Owayyed, S. A., Zhao, D., Zhang, S., Al-Otaibi, N. A., Sun, G., Majrashi, M. A., Li, F., Tala, Wang, J., Yun, Q., Alnassar, N. A., Wang, L., Yang, M., Al-Jelaify, R. F., Liu, K., Gao, S., Chen, K., Alkhaldi, S. R., Liu, G., Zhang, M., Guo, H., & Yu, J.
- Venue
- Nature Communications
- Published
- 2013-08-06
- Volume
- 4
- Issue
- 1
- Pages
- 2274-2274
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2043573189
- Cited by
- 320
- References
- 42
- FWCI
- 27.68
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Al-Mssallem, I. S., Hu, S., Zhang, X., Lin, Q., Liu, W., Tan, J., Yu, X., Liu, J., Pan, L., Zhang, T., Yin, Y., Xin, C., Wu, H., Zhang, G., Ba Abdullah, M. M., Huang, D., Fang, Y., Alnakhli, Y. O., Jia, S., . . . Yu, J. (2013). Genome sequence of the date palm Phoenix dactylifera L. Nature Communications. https://doi.org/10.1038/ncomms3274
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