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Cited by 320

The DOI matches its Crossref record; 42 of the 42 references it cites were found in a registry or an index.

Genome sequence of the date palm Phoenix dactylifera L

Open access
Al-Mssallem, Ibrahim S., Hu, Songnian, Zhang, Xiaowei, Lin, Qiang, Liu, Wanfei, Tan, Jun, Yu, Xiaoguang, Liu, Jiucheng, Pan, Linlin, Zhang, Tongwu, Yin, Yuxin, Xin, Chengqi, Wu, Hao, Zhang, Guangyu, Ba Abdullah, Mohammed M., Huang, Dawei, Fang, Yongjun, Alnakhli, Yasser O., Jia, Shangang, Yin, An, Alhuzimi, Eman M., Alsaihati, Burair A., Al-Owayyed, Saad A., Zhao, Duojun, Zhang, Sun, Al-Otaibi, Noha A., Sun, Gaoyuan, Majrashi, Majed A., Li, Fusen, Tala, Wang, Jixiang, Yun, Quanzheng, Alnassar, Nafla A., Wang, Lei, Yang, Meng, Al-Jelaify, Rasha F., Liu, Kan, Gao, Shenghan, Chen, Kaifu, Alkhaldi, Samiyah R., Liu, Guiming, Zhang, Meng, Guo, Haiyan, Yu, Jun·2013·Nature Communications
DOI 10.1038/ncomms3274
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Abstract

Date palm (Phoenix dactylifera L.) is a cultivated woody plant species with agricultural and economic importance. Here we report a genome assembly for an elite variety (Khalas), which is 605.4 Mb in size and covers >90% of the genome (~671 Mb) and >96% of its genes (~41,660 genes). Genomic sequence analysis demonstrates that P. dactylifera experienced a clear genome-wide duplication after either ancient whole genome duplications or massive segmental duplications. Genetic diversity analysis indicates that its stress resistance and sugar metabolism-related genes tend to be enriched in the chromosomal regions where the density of single-nucleotide polymorphisms is relatively low. Using transcriptomic data, we also illustrate the date palm’s unique sugar metabolism that underlies fruit development and ripening. Our large-scale genomic and transcriptomic data pave the way for further genomic studies not only on P. dactylifera but also other Arecaceae plants. The date palm is one of the most economically important plants of the palm family. Here, the authors present a high-quality genome assembly of the date palm Phoenix dactylifera, and reveal insights into the unique sugar metabolism underlying fruit ripening.

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Metadata

Authors
Al-Mssallem, I. S., Hu, S., Zhang, X., Lin, Q., Liu, W., Tan, J., Yu, X., Liu, J., Pan, L., Zhang, T., Yin, Y., Xin, C., Wu, H., Zhang, G., Ba Abdullah, M. M., Huang, D., Fang, Y., Alnakhli, Y. O., Jia, S., Yin, A., Alhuzimi, E. M., Alsaihati, B. A., Al-Owayyed, S. A., Zhao, D., Zhang, S., Al-Otaibi, N. A., Sun, G., Majrashi, M. A., Li, F., Tala, Wang, J., Yun, Q., Alnassar, N. A., Wang, L., Yang, M., Al-Jelaify, R. F., Liu, K., Gao, S., Chen, K., Alkhaldi, S. R., Liu, G., Zhang, M., Guo, H., & Yu, J.
Venue
Nature Communications
Publisher
Springer Science and Business Media LLC
Published
2013-08-06
Volume
4
Issue
1
Pages
2274-2274
ISSN
2041-1723 (ISSN-L)
DOI
10.1038/ncomms3274
OpenAlex
W2043573189
Cited by
320
References
42
FWCI
27.68
Type
journal article
Language
en
Open access
hybrid

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