Genome-wide efficient mixed-model analysis for association studies

Zhou, Xiang, Stephens, Matthew·2012·Nature Genetics

DOI 10.1038/ng.2310

Cited by (1,005)

Items 601–700 of 1,005

Identify known and novel candidate genes associated with backfat thickness in Duroc pigs by large-scale genome-wide association analysis
Rongrong Ding, Zhanwei Zhuang, Yibin Qiu, Donglin Ruan, Jie Wu, Jian Ye, Lu Cao, Shenping Zhou, Enqin Zheng, Wen Huang et al. · 2022 · Journal of Animal Science
Genomic insights into longan evolution from a chromosome-level genome assembly and population genomics of longan accessions
Jing Wang, Jianguang Li, Zaiyuan Li, Bo Liu, Lili Zhang, Dongliang Guo, Shilian Huang, Wanqiang Qian, Li Guo · 2022 · Horticulture Research
Target-oriented prioritization: targeted selection strategy by integrating organismal and molecular traits through predictive analytics in breeding
Wenyu Yang, Tingting Guo, Jingyun Luo, Ruyang Zhang, Jiuran Zhao, Marilyn L. Warburton, Yingjie Xiao, Jianbing Yan · 2022 · Genome biology
Multigenic resistance to Xylella fastidiosa in wild grapes (Vitis sps.) and its implications within a changing climate
Abraham Morales‐Cruz, Jonás A. Aguirre‐Liguori, Mélanie Massonnet, Andrea Minio, Mirella Zaccheo, Noé Cochetel, Andrew Walker, Summaira Riaz, Yongfeng Zhou, Dario Cantù et al. · 2023 · Communications Biology
Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex
Roger Vargas, Michael J. Luna, Luca Freschi, Maximillian G. Marin, Ruby Froom, Kenan C. Murphy, Elizabeth A. Campbell, Thomas R. Ioerger, Christopher M. Sassetti, Maha Reda Farhat · 2023 · Proceedings of the National Academy of Sciences
Downregulation of a transcription factor associated with resistance to Bt toxin Vip3Aa in the invasive fall armyworm
Minghui Jin, Yinxue Shan, Yan Peng, Wenhui Wang, Huihui Zhang, Kaiyu Liu, David G. Heckel, Kongming Wu, Bruce E. Tabashnik, Yutao Xiao · 2023 · Proceedings of the National Academy of Sciences
Natural variation in BnaA07.MKK9 confers resistance to Sclerotinia stem rot in oilseed rape
Lin Li, Xingrui Zhang, Jialin Fan, Jiawei Li, Sichao Ren, Xin Gu, Panpan Li, Meiling Xu, Jingyi Xu, Wenjing Lei et al. · 2024 · Nature Communications
High-Resolution Genetic Mapping of Complex Traits from a Combined Analysis of F2 and Advanced Intercross Mice
Clarissa C. Parker, Peter S. Carbonetto, Greta Sokoloff, Yeonhee J Park, Mark Abney, Abraham A. Palmer · 2014 · Genetics
The path from big data to precision medicine
Bevan Emma Huang, Widya Mulyasasmita, Gunaretnam Rajagopal · 2016 · Expert Review of Precision Medicine and Drug Development
Resources for Systems Genetics
Robert W. Williams, Evan G. Williams · 2016 · Methods in molecular biology
An efficient unified model for genome-wide association studies and genomic selection
Hengde Li, Guosheng Su, Li Jiang, Zhenmin Bao · 2017 · Genetics Selection Evolution
Multiple locus genome-wide association studies for important economic traits of oil palm
Maizura Binti Ithnin, YANG CANG XU, Marhalil Marjuni, Norhalida Mohamed Serdari, Mohd Din Amiruddin, Eng‐Ti Leslie Low, Yung-Chie Tan, Soon-Joo Yap, Leslie Cheng‐Li Ooi, Rajanaidu Nookiah et al. · 2017 · Tree Genetics & Genomes
Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis
Yuan Li, Benjamin J. Metcalf, Sopio Chochua, Zhongya Li, Hollis Walker, Theresa Nguyen Tran, Paulina A. Hawkins, Ryan Gierke, Tamara Pilishvili, Lesley McGee et al. · 2019 · Nature Communications
High‐density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China
Xinhui Nie, Tianwang Wen, Panxia Shao, Binghui Tang, Nurimanguli Aini, Yu Yu, Xiongming Du, Chunyuan You, Zhongxu Lin · 2020 · The Plant Journal
Genome‐wide association study of fleece traits in Inner Mongolia Cashmere goats
Fenghong Wang, L. Zhang, G. Gong, X. C. Yan, L. T. Zhang, Fuman Zhang, H. F. Liu, Qi Lv, Z. Y. Wang, R. J. Wang et al. · 2021 · Animal Genetics
Genome-wide association study meta-analysis identifies three novel loci for circulating anti-Müllerian hormone levels in women
Renée M.G. Verdiesen, Yvonne T. van der Schouw, Carla Henrica van Gils, W. M. Monique Verschuren, Frank J. Broekmans, Maria Carolina Borges, Ana Gonçalves Soares, Debbie A. Lawlor, A. Heather Eliassen, Peter L. Kraft et al. · 2022 · Human Reproduction
Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome
Poppy Sephton-Clark, Jennifer L. Tenor, Dena L. Toffaletti, Nancy Meyers, Charles D. Giamberardino, Síle F. Molloy, Julia R. Palmucci, Adrienne Kit Chan, Tarsizio Chikaonda, Robert S. Heyderman et al. · 2022 · mBio
Association Mapping of Genetic Resources: Achievements and Future Perspectives
Sivakumar Sukumaran, Jianming Yu · 2013 · Springer eBooks
Prophage-encoded immune evasion factors are critical for Staphylococcus aureus host infection, switching, and adaptation
Chrispin Chaguza, Joshua T. Smith, Spencer A. Bruce, R. J. Gibson, Isabella W. Martin, Cheryl P. Andam · 2022 · Cell Genomics
A role for heritable transcriptomic variation in maize adaptation to temperate environments
Guangchao Sun, Huihui Yu, Peng Wang, Martha Lopez‐Guerrero, Ravi V. Mural, Olivier N. Mizero, Marcin Grzybowski, Baoxing Song, Karin van Dijk, Daniel P. Schachtman et al. · 2023 · Genome biology
Introgression dynamics of sex-linked chromosomal inversions shape the Malawi cichlid radiation
Moritz Blumer, Valentina Burskaia, Ilya V. Artyushin, Jaysmita Saha, Julia Camacho-Garcia, Francisco Campuzano Jiménez, Alexander Hooft van Huysduynen, Joel Elkin, Bettina Fischer, Natalie Van Houtte et al. · 2025 · Science
A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species
Andrés Legarra, Pascal Croiseau, Marie Sanchez, Simon Teyssèdre, Guillaume Sallé, Sophie Allais, Sébastien Fritz, Carole Moreno, Anne Ricard, Jean-Michel Elsen · 2015 · Genetics Selection Evolution
Concepts and Relevance of Genome-Wide Association Studies
Andreas Scherer, G. Bryce Christensen · 2016 · Science Progress
A Genomewide Association Study Identifies Two Sex‐Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites
Alessandra Chesi, Jonathan A. Mitchell, Heidi J. Kalkwarf, Jonathan P. Bradfield, Joan M. Lappe, Diana L. Cousminer, Sani M. Roy, Shana Erin McCormack, Vicente Gilsanz, Sharon E. Oberfield et al. · 2017 · Journal of Bone and Mineral Research
GW-SEM: A Statistical Package to Conduct Genome-Wide Structural Equation Modeling
Brad Verhulst, HERMINE H. M. MAES, Michael Churton Neale · 2017 · Behavior Genetics
CPT1A Missense Mutation Associated With Fatty Acid Metabolism and Reduced Height in Greenlanders
Line Skotte, Anders Koch, Victor Yakimov, Sirui Zhou, Bolette Søborg, Mikael Andersson, Sascha Wilk Michelsen, Johan E. Navne, Jacqueline Møller Mistry, Patrick A. Dion et al. · 2017 · Circulation Cardiovascular Genetics
Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data
Jinzhuang Dou, Baoluo Sun, Xueling Sim, Jason D. Hughes, Dermot F. Reilly, E Shyong Tai, Jianjun Liu, Chaolong Wang · 2017 · PLoS Genetics
Silencing GRAS2 reduces fruit weight in tomato
Miao Li, Xin Wang, Changxing Li, Jianhua Li, Junhong Zhang, Zhibiao Ye · 2018 · Journal of Integrative Plant Biology
Linking plant genes to insect communities: Identifying the genetic bases of plant traits and community composition
Hilary L. Barker, Jennifer F. Lind-Riehl, Carolina Bernhardsson, Kennedy F. Rubert‐Nason, Liza M. Holeski, Pär K. Ingvarsson, Richard L. Lindroth · 2019 · Molecular Ecology
Analysis of mitochondrial m1A/G RNA modification reveals links to nuclear genetic variants and associated disease processes
Aminah T. Ali, Y. Idaghdour, Alan Hodgkinson · 2020 · Communications Biology
Identification of eQTLs associated with lipid metabolism in Longissimus dorsi muscle of pigs with different genetic backgrounds
Lourdes Criado‐Mesas, María Ballester, Daniel Crespo‐Piazuelo, Anna Castelló, Ana Isabel Fernández, Josep María Folch · 2020 · Scientific Reports
Rapid epistatic mixed-model association studies by controlling multiple polygenic effects
Dan Wang, Hui Tang, Jianfeng Liu, Shizhong Xu, Qin Zhang, Chao Ning · 2020 · Bioinformatics
Gene expression variability in human and chimpanzee populations share common determinants
Benjamin Jung Fair, Lauren E. Blake, Abhishek Sarkar, Bryan J. Pavlovic, Claudia Cuevas, Yoav Gilad · 2020 · eLife
The genomics of rapid climatic adaptation and parallel evolution in North American house mice
Kathleen G. Ferris, Andreas S. Chavez, Taichi A. Suzuki, Elizabeth J. Beckman, Megan Phifer‐Rixey, Ke Bi, Michael W. Nachman · 2021 · PLoS Genetics
Type 2 Diabetes Is Causally Associated With Reduced Serum Osteocalcin: A Genomewide Association and Mendelian Randomization Study
Hailuan Zeng, Jieyu Ge, Wenjie Xu, Hui Ma, Lingyan Chen, Mingfeng Xia, Baishen Pan, Huandong Lin, Sijia Wang, Xin Gao · 2020 · Journal of Bone and Mineral Research
Chromosome‐level assembly of the Neolamarckia cadamba genome provides insights into the evolution of cadambine biosynthesis
Xiaolan Zhao, Xiaodi Hu, Kunxi Ouyang, Jing Yang, Qingmin Que, Jianmei Long, Jianxia Zhang, Tong Zhang, Xue Wang, Jiayu Gao et al. · 2021 · The Plant Journal
MASTOR: Mixed-Model Association Mapping of Quantitative Traits in Samples with Related Individuals
Jóhanna Jakobsdóttir, Mary Sara McPeek · 2013 · The American Journal of Human Genetics
Type 1 diabetes in Africa: an immunogenetic study in the Amhara of North-West Ethiopia
Balcha, Shitaye A., Demisse, Abayneh G., Mishra, Rajashree, Vartak, Tanwi, Cousminer, Diana L., Hodge, Kenyaita M., Voight, Benjamin F., Lorenz, Kim, Schwartz, Stanley, Jerram, Samuel T. et al. · 2020 · Diabetologia
INSurVeyor: improving insertion calling from short read sequencing data
Ramesh Rajaby, Dongxu Liu, Chun Hang Au, Yuen-Ting Cheung, Amy Yuet Ting Lau, Qingyong Yang, Wing-Kin Ken Sung · 2023 · Nature Communications
Century-long timelines of herbarium genomes predict plant stomatal response to climate change
Patricia L. M. Lang, Joel M. Erberich, Lúa López, Clemens L. Weiß, Gabriel O. Amador, Hannah F. Fung, Sergio M. Latorre, Jesse R. Lasky, Hernán A. Burbano, Moisés Expósito‐Alonso et al. · 2024 · Nature Ecology & Evolution
Quantitative trait loci mapping for canine hip dysplasia and its related traits in UK Labrador Retrievers
Enrique Sánchez-Molano, John Arthur Woolliams, Ricardo Pong‐Wong, Dylan Neil Clements, Sarah C Blott, Pamela Wiener · 2014 · BMC Genomics
Bayesian inference of selection in a heterogeneous environment from genetic time‐series data
Zachariah Gompert · 2015 · Molecular Ecology
Genetic Diversity and Elite Allele Mining for Grain Traits in Rice (Oryza sativa L.) by Association Mapping
Wisdom Mawuli Edzesi, Xiaojing Dang, Lijun Liang, Erbao Liu, Imdad Ullah Zaid, Delin Hong · 2016 · Frontiers in Plant Science
Association Analysis in Rice: From Application to Utilization
Peng Zhang, Kaizhen Zhong, Muhammad Qasim Shahid, Hanhua Tong · 2016 · Frontiers in Plant Science
Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation
Benjamin H. Mullin, Jing Hua Zhao, Suzanne J. Brown, John R. B. Perry, Jian’an Luan, Hou‐Feng Zheng, Claudia Langenberg, Frank Dudbridge, Robert A. Scott, Nicholas J. Wareham et al. · 2017 · Human Molecular Genetics
Whole-exome sequencing identified four loci influencing craniofacial morphology in northern Han Chinese
Wei Wu, Guiying Zhai, Zejun Xu, Bo Hou, Da-Hua Liu, Tianyi Liu, Wei Liu, Fu Ren · 2019 · Human Genetics
Ancestry‐specific association mapping in admixed populations
Line Skotte, Emil Jørsboe, Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen · 2019 · Genetic Epidemiology
Inferring Identical-by-Descent Sharing of Sample Ancestors Promotes High-Resolution Relative Detection
Monica D. Ramstetter, Sushila A. Shenoy, Thomas D. Dyer, Donna M. Lehman, Joanne E. Curran, Ravindranath Duggirala, John Blangero, Jason G. Mezey, Amy L. Williams · 2018 · The American Journal of Human Genetics
Butterfly Mimicry Polymorphisms Highlight Phylogenetic Limits of Gene Reuse in the Evolution of Diverse Adaptations
Nicholas W. VanKuren, Darli Massardo, Sumitha Nallu, Marcus R. Kronforst · 2019 · Molecular Biology and Evolution
Genome‐wide association study of body weight and conformation traits in neonatal sheep
Lin Tao, Xiaoyun He, Linxiang Pan, J. W. Wang, Shangquan Gan, Mingxing Chu · 2020 · Animal Genetics
A Drosophila screen identifies NKCC1 as a modifier of NGLY1 deficiency
Dana M Talsness, Katie G Owings, Emily Coelho, Gaëlle Mercenne, John M. Pleinis, Raghavendran Partha, Kevin A. Hope, Aamir R. Zuberi, Nathan L Clark, Cathleen M. Lutz et al. · 2020 · eLife
Regulation of protein abundance in genetically diverse mouse populations
Gregory R. Keele, Tian Zhang, Duy T. Pham, Matthew J. Vincent, Timothy A. Bell, Pablo Hock, Ginger D. Shaw, João A. Paulo, Steven C. Munger, Fernando Pardo‐Manuel de Villena et al. · 2021 · Cell Genomics
A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens
Christos Dadousis, Adriana Luiza Somavilla, Joanna Jadwiga Ilska, Martin Johnsson, Lorena Guimarães Batista, Richard John Mellanby, Denis J. Headon, P. Gottardo, Andrew Whalen, David Wilson et al. · 2021 · Genetics Selection Evolution
Genome-Wide Detection of Genetic Loci and Candidate Genes for Body Conformation Traits in Duroc × Landrace × Yorkshire Crossbred Pigs
Hui Zhang, Zhanwei Zhuang, Ming Jun Yang, Rongrong Ding, Jianping Quan, Shenping Zhou, Ting Gu, Zheng Quan Xu, Enqin Zheng, Gengyuan Cai et al. · 2021 · Frontiers in Genetics
DeepNull models non-linear covariate effects to improve phenotypic prediction and association power
Zachary Ryan McCaw, Thomas Colthurst, Taedong Yun, Nicholas A. Furlotte, Andrew W. Carroll, Babak Alipanahi, Cory Y. McLean, Farhad Hormozdiari · 2022 · Nature Communications
Efficient ReML inference in variance component mixed models using a Min-Max algorithm
Fabien Laporte, Alain Charcosset, Tristan Mary‐Huard · 2022 · PLoS Computational Biology
Age and diet shape the genetic architecture of body weight in diversity outbred mice
Kevin M. Wright, Andrew G. Deighan, Andrea Di Francesco, Adam Freund, Vladimir Jojic, Gary A. Churchill, Anil Raj · 2022 · eLife
The morphometry of left cuneus mediating the genetic regulation on working memory
Xiaoxi He, Xi Li, Jilian Fu, Jiayuan Xu, Huaigui Liu, Peng Zhang, Ranran Liu, Chunshui Yu, Zhaoxiang Ye, Wen Qin · 2021 · Human Brain Mapping
Marker-assisted selection in a Pacific oyster population for an antiviral QTL conferring increased survival to OsHV-1 mortality events in Tomales Bay
Konstantin Divilov, Noah Merz, Blaine Schoolfield, Timothy J. Green, Chris J. Langdon · 2023 · Aquaculture
Integrative genomics reveals the polygenic basis of seedlessness in grapevine
Xu Wang, Zhongjie Liu, Fan Zhang, Hua Xiao, Shuo Cao, Hui Xue, Wénwén Liú, Ying Su, Zhenya Liu, Haixia Zhong et al. · 2024 · Current Biology
An integrated microbiome- and metabolome-genome-wide association study reveals the role of heritable ruminal microbial carbohydrate metabolism in lactation performance in Holstein dairy cows
Chenguang Zhang, Huifeng Liu, Xingwei Jiang, Zhihong Zhang, Xinfeng Hou, Yue Wang, Dangdang Wang, Zongjun Li, Yangchun Cao, Shengru Wu et al. · 2024 · Microbiome
Genetic and genomic dissection of dry matter intake at different lactation stages in primiparous Holstein cows
Jens Tetens, Georg Erwin Thaller, Nina Krattenmacher · 2013 · Journal of Dairy Science
Metabolome-wide association studies for agronomic traits of rice
Julong Wei, Aiguo Wang, Ruidong Li, Han Qu, Zhenyu Jia · 2017 · Heredity
Genetic Modifiers of Neurodegeneration in a Drosophila Model of Parkinson’s Disease
Sierra Lavoy, Vinita G. Chittoor-Vinod, Clement Y. Chow, Ian Martin · 2018 · Genetics
Analysis of the genetic architecture of energy balance and its major determinants dry matter intake and energy-corrected milk yield in primiparous Holstein cows
Nina Krattenmacher, Georg Erwin Thaller, Jens Tetens · 2019 · Journal of Dairy Science
Efficient multivariate analysis algorithms for longitudinal genome-wide association studies
Chao Ning, Dan Wang, Lei Zhou, Julong Wei, Yuanxin Liu, Huimin Kang, Shengli Zhang, Xiang Zhou, Shizhong Xu, Jianfeng Liu · 2019 · Bioinformatics
Genome-wide association analysis of adaptation to oxygen stress in Nile tilapia (Oreochromis niloticus)
Xiaofei Yu, Hendrik‐Jan Megens, Samuel Bekele Mengistu, J.W.M. Bastiaansen, H.A. Mulder, John Benzie, Martien A. M. Groenen, Hans Komen · 2021 · BMC Genomics
Design and evaluation of a custom 50K Infinium SNP array for egg-type chickens
Zhuang Liu, Congjiao Sun, Yiyuan Yan, Guangqi Li, Xiao Chang Li, Guiqin Wu, Ning Yang · 2021 · Poultry Science
Direct introgression of untapped diversity into elite wheat lines
Sukhwinder Singh, Abdulqader Jighly, D. Sehgal, J. Burgueño, Reem Joukhadar, S. K. Singh, Achla Sharma, Prashant Vikram, Carolina Sansaloni, Govindan Velu et al. · 2021 · Nature Food
Linked supergenes underlie split sex ratio and social organization in an ant
German Lagunas‐Robles, Jessica Purcell, Alan Brelsford · 2021 · Proceedings of the National Academy of Sciences
Assessment of Heterozygosity and Genome-Wide Analysis of Heterozygosity Regions in Two Duroc Pig Populations
Donglin Ruan, Jie Yang, Zhanwei Zhuang, Rongrong Ding, Jinyan Huang, Jianping Quan, Ting Gu, Linjun Hong, Enqin Zheng, Zicong Li et al. · 2022 · Frontiers in Genetics
PGS-server: accuracy, robustness and transferability of polygenic score methods for biobank scale studies
Sheng Yang, Xiang Zhou · 2022 · Briefings in Bioinformatics
Genome-Wide Association Study Statistical Models: A Review
Mohsen Yoosefzadeh-Najafabadi, Milad Eskandari, Francois J. Belzile, Davoud Torkamaneh · 2022 · Methods in molecular biology
The causal meaning of Fisher's average effect
James J. Lee, Carson C. Chow · 2013 · Genetics Research
Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens
Jingwei Yuan, Sirui Chen, Fengying Shi, Guiqin Wu, Aiqiao Liu, Ning Yang, Congjiao Sun · 2017 · BMC Genomics
Likelihood-based Mendelian randomization analysis with automated instrument selection and horizontal pleiotropic modeling
Zhongshang Yuan, Lu Liu, Ping Guo, Ran Yan, Fuzhong Xue, Xiang Zhou · 2022 · Science Advances
Unifying approaches from statistical genetics and phylogenetics for mapping phenotypes in structured populations
Joshua G. Schraiber, Michael D. Edge, Matt Pennell · 2024 · PLoS Biology
Towards improved fine-mapping of candidate causal variants
Zheng Li, Xiang Zhou · 2025 · Nature Reviews Genetics
Software solutions for the livestock genomics SNP array revolution
Ezequiel Luís Nicolazzi, Stefano Biffani, Filippo Biscarini, Pablo Orozco‐terWengel, Andrea Caprera, Nelson Nazzicari, Alessandra Stella · 2015 · Animal Genetics
Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans
Suk‐Kyun Yang, Myunghee Hong, Hyunjung Oh, Hui-Qi Low, Seulgi Jung, Seonjoo Ahn, Young‐Jin Kim, Jiwon Baek, Cue Hyunkyu Lee, Eunji Kim et al. · 2016 · Gastroenterology
Single nucleotide polymorphisms in the bovine MHC region of Japanese Black cattle are associated with bovine leukemia virus proviral load
Shin‐nosuke Takeshima, Shinji Sasaki, Meripet Polat, Yoshikazu Sugimoto, Yoko Aida · 2017 · Retrovirology
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume
Simon J. Haworth, Chin Yang Shapland, Caroline Hayward, Bram Peter Prins, Janine F. Felix, Carolina Medina‐Gómez, Fernando Rivadeneira, Carol A. Wang, Tarunveer S. Ahluwalia, Martine Vrijheid et al. · 2019 · Nature Communications
Cis‐regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis
Xuncheng Wang, Mei Yang, Diqiu Ren, William Terzaghi, Xing‐Wang Deng, Guangming He · 2018 · The Plant Journal
Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti
Brendan Epstein, Reda A.I. Abou-Shanab, Abdelaal Shamseldin, Margaret R. Taylor, Joseph G. Guhlin, Liana T. Burghardt, Matthew S. Nelson, Michael Jay Sadowsky, Peter Tiffin · 2018 · mSphere
Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models
Mehdi M. Momen, Ahmad Ayatollahi Mehrgardi, Mahmoud Amiri Roudbar, Andreas Kranis, Renan Mercuri Pinto, Bruno Dourado Valente, Gota Morota, Guilherme J. M. Rosa, Daniel Gianola B · 2018 · Frontiers in Genetics
Controlling for Confounding Effects in Single Cell RNA Sequencing Studies Using both Control and Target Genes
Mengjie Chen, Xiang Zhou · 2017 · Scientific Reports
Elucidating the Genetic Architecture of Fiber Quality in Hemp (Cannabis sativa L.) Using a Genome-Wide Association Study
Jordi Petit, Elma M. J. Salentijn, Maria‐João Paulo, Christel Denneboom, Eibertus Nicolaas van Loo, Luisa M. Trindade · 2020 · Frontiers in Genetics
Genome-Wide Association Study of Body Weight Traits in Inner Mongolia Cashmere Goats
Lei Zhang, Fenghong Wang, Gao Gong, Xiaochun Yan, Hongfu Liu, Zhihong Liu, Zhixin Wang, Libing He, Qi Lv, Zhiying Wang et al. · 2021 · Frontiers in Veterinary Science
Fine-scale population structure and demographic history of British Pakistanis
Elena Arciero, Sufyan Abid Dogra, Daniel Shiloh Malawsky, Massimo Mezzavilla, Theofanis Tsismentzoglou, Qin Qin Huang, Karen A. Hunt, Dan Mason, Saghira Malik Sharif, David A. van Heel et al. · 2021 · Nature Communications
Fatty acid metabolism-related genes are associated with flavor-presenting aldehydes in Chinese local chicken
Xiaoya Yuan, Huanxian Cui, Yuxi Jin, Wenjuan Zhao, Xiaojing Liu, Yongli Wang, Jiqiang Ding, Li Liu, Jie Wen, Guiping Zhao · 2022 · Frontiers in Genetics
Uncovering natural variation in root system architecture and growth dynamics using a robotics-assisted phenomics platform
Therese LaRue, Heike Lindner, Ankit Srinivas, Moisés Expósito‐Alonso, Guillaume Lobet, Jose Ramon Dinneny · 2022 · eLife
Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean
Delin Li, Dong Bai, Yu Tian, Yinghui Li, Chaosen Zhao, Qi Wang, Shiyu Guo, Yongzhe Gu, Xiaoyan Luan, Ruizhen Wang et al. · 2022 · Journal of Integrative Plant Biology
The regulatory landscape of multiple brain regions in outbred heterogeneous stock rats
Daniel B. Munro, Tengfei Wang, Apurva S. Chitre, Oksana Polesskaya, Nava Ehsan, Jianjun Gao, Alexander Gusev, Leah C. Solberg Woods, Laura M. Saba, Hao Chen et al. · 2022 · Nucleic Acids Research
Long divergent haplotypes introgressed from wild sheep are associated with distinct morphological and adaptive characteristics in domestic sheep
Hong Cheng, Zhuangbiao Zhang, Jiayue Wen, Johannes Arjen Lenstra, Rasmus Heller, Yudong Cai, Yingwei Guo, Ming Li, Ran Li, Wenrong Li et al. · 2023 · PLoS Genetics
Eigen decomposition expedites longitudinal genome-wide association studies for milk production traits in Chinese Holstein
Chao Ning, Dan Wang, Xianrui Zheng, Qin Zhang, Shengli Zhang, Raphael Mrode, Jianfeng Liu · 2018 · Genetics Selection Evolution
The rice leaf microbiome has a conserved community structure controlled by complex host-microbe interactions
Verónica Román-Reyna, Dale S. Pinili, Frances Nikki Borja, Ian Lorenzo Quibod, Simon Cornelis Groen, Enung Sri Mulyaningsih, Agus Rachmat, Inez H. Slamet‐Loedin, Nickolai N. Alexandrov, Ramil Mauleon et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
Nosocomial surveillance of multidrug-resistant Acinetobacter baumannii : a genomic epidemiological study
Zhimei Duan, Xuming Li, Song Li, Hui Zhou, Long Hu, Han Xia, Lixin Xie, Fei Xie · 2024 · Microbiology Spectrum
A nonsense mutation in PLD4 is associated with a zinc deficiency-like syndrome in Fleckvieh cattle
Simone Jung, Hubert Pausch, Martin C. Langenmayer, Hermann Schwarzenbacher, Monir Majzoub‐Altweck, N.S. Gollnick, Ruedi Fries · 2014 · BMC Genomics
Identification and validation of risk loci for osteochondrosis in standardbreds
Annette M. McCoy, Samantha K. Beeson, Rebecca K. Splan, Sigrid Lykkjen, Sarah Lucille Ralston, James R. Mickelson, Molly E. McCue · 2016 · BMC Genomics
Genome-wide association analysis reveals genomic regions on Chromosome 13 affecting litter size and candidate genes for uterine horn length in Erhualian pigs
Xiang Ma, Pinhong Li, Mengxia Zhu, Lichun He, S.P. Sui, Shuo Gao, Guosheng Su, Nengshui Ding, Yizhong Huang, Z.Q. Lu et al. · 2018 · animal