Genome-wide efficient mixed-model analysis for association studies

Zhou, Xiang, Stephens, Matthew·2012·Nature Genetics

Cited by (1,005)

Items 101–200 of 1,005

  1. Marker-Based Estimation of Heritability in Immortal Populations
    Willem Kruijer, Martin P. Boer, Marcos Malosetti, Pádraic J. Flood, BAS ENGEL, Rik Kooke, Joost J. B. Keurentjes, Fred A. van Eeuwijk · 2014 · Genetics
  2. pKWmEB: integration of Kruskal–Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study
    Wenlong Ren, Yang-Jun Wen, Jim M. Dunwell, Yuan‐Ming Zhang · 2017 · Heredity
  3. Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens
    Chaoliang Wen, Wei Yan, Chunning Mai, Zhongyi Duan, Jiangxia Zheng, Congjiao Sun, Ning Yang · 2021 · Microbiome
  4. Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet
    Haidong Yan, Min Sun, Zhongren Zhang, Yarong Jin, Ailing Zhang, Chuang Lin, Bingchao Wu, Min He, Bin Xu, Jing Wang et al. · 2023 · Nature Genetics
  5. Impaired phloem loading in zmsweet13a,b,c sucrose transporter triple knock‐out mutants in Zea mays
    Margaret Bezrutczyk, Thomas Hartwig, Marc Horschman, Si Nian Char, Jinliang Yang, Bing Yang, Davide Sosso, Wolf Bernd Frommer · 2018 · New Phytologist
  6. SNP-mediated disruption of CTCF binding at the IFITM3 promoter is associated with risk of severe influenza in humans
    Emma Kaitlynn Allen, Adrienne G. Randolph, Tushar Bhangale, Pranay Dogra, Maikke B. Ohlson, Christine M. Oshansky, Anthony Elston Zamora, John P. Shannon, David Finkelstein, Amy Dressen et al. · 2017 · Nature Medicine
  7. A Fast Method that Uses Polygenic Scores to Estimate the Variance Explained by Genome-wide Marker Panels and the Proportion of Variants Affecting a Trait
    Luigi Palla, Frank Dudbridge · 2015 · The American Journal of Human Genetics
  8. Meta-analysis of gene-level tests for rare variant association
    Dajiang J. Liu, Gina Marie Peloso, Xiaowei Zhan, Oddgeir L. Holmen, Matthew Zawistowski, Shuang Feng, Majid Nikpay, Paul Livermore Auer, Anuj Goel, He Zhang et al. · 2013 · Nature Genetics
  9. Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits
    Ioanna Tachmazidou, Dániel Süveges, Josine L. Min, Graham R. S. Ritchie, Julia Steinberg, Klaudia Walter, Valentina Iotchkova, Jeremy Schwartzentruber, Jie Huang, Yasin Memari et al. · 2017 · The American Journal of Human Genetics
  10. Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle
    Ignácio Aguilar, Andrés Legarra, F. F. Cardoso, Yutaka Masuda, Daniela A. L. Lourenco, I. Misztal · 2019 · Genetics Selection Evolution
  11. Genome-Wide Association Study Reveals Novel Quantitative Trait Loci Associated with Resistance to Multiple Leaf Spot Diseases of Spring Wheat
    Suraj Gurung, Sujan Mamidi, J. M. Bonman, Mai Xiong, Gina Brown‐Guedira, Tika B. Adhikari · 2014 · PLoS ONE
  12. Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs
    vonHoldt, Bridgett M., Shuldiner, Emily, Koch, Ilana Janowitz, Kartzinel, Rebecca Y., Hogan, Andrew, Brubaker, Lauren, Wanser, Shelby, Stahler, Daniel, Wynne, Clive D. L., Ostrander, Elaine A. et al. · 2017 · Science Advances
  13. Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)
    Hasina Begum, Jennifer E. Spindel, Antonio G. Lalusin, Teresita H. Borromeo, Glenn B. Gregorio, Jose E. Hernandez, Parminder S. Virk, B. C. Y. Collard, Susan R. McCouch · 2015 · PLoS ONE
  14. ABO genotype alters the gut microbiota by regulating GalNAc levels in pigs
    Hui Yang, Jinyuan Wu, Xiaochang Huang, Yunyan Zhou, Yifeng Zhang, Min Liu, Qin Liu, Shanlin Ke, Maozhang He, Hao Fu et al. · 2022 · Nature
  15. Identifying genetic variants underlying phenotypic variation in plants without complete genomes
    Yoav Voichek, Detlef Weigel · 2020 · Nature Genetics
  16. Tensor decomposition for multiple-tissue gene expression experiments
    Victoria Hore, Ana Viñuela, Alfonso Buil, Julian Charles Knight, Mark I. McCarthy, Kerrin S. Small, Jonathan Marchini · 2016 · Nature Genetics
  17. Variation of BMP3 Contributes to Dog Breed Skull Diversity
    Jeffrey J. Schoenebeck, Sarah A. Hutchinson, Alexandra Byers, Holly C. Beale, Blake Carrington, Daniel L. Faden, Maud Rimbault, Brennan James Decker, Jeffrey M. Kidd, Raman B. Sood et al. · 2012 · PLoS Genetics
  18. Genetics of complex traits: prediction of phenotype, identification of causal polymorphisms and genetic architecture
    Michael Edward Goddard, Kathryn E. Kemper, Iona M. MacLeod, Amanda Jane Chamberlain, Ben J. Hayes · 2016 · Proceedings of the Royal Society B Biological Sciences
  19. GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions
    Maha Reda Farhat, Luca Freschi, Roger I. Calderon, Thomas R. Ioerger, Matthew W. Snyder, Conor Joseph Meehan, Bouke Catherine de Jong, Leen Rigouts, Alex Sloutsky, Devinder Kaur et al. · 2019 · Nature Communications
  20. THP9 enhances seed protein content and nitrogen-use efficiency in maize
    Yongcai Huang, Haihai Wang, Yidong Zhu, Xing Huang, Shuai Li, Xingguo Wu, Yao Lin Zhao, Zhigui Bao, Li Qin, Yongbo Jin et al. · 2022 · Nature
  21. A platform for experimental precision medicine: The extended BXD mouse family
    Ashbrook, David G., Arends, Danny, Prins, Pjotr, Mulligan, Megan K., Roy, Suheeta, Williams, Evan G., Lutz, Cathleen M., Valenzuela, Alicia, Bohl, Casey J., Ingels, Jesse F. et al. · 2021 · Cell Systems
  22. A fast mrMLM algorithm for multi-locus genome-wide association studies
    Cox Lwaka Tamba, Yuan‐Ming Zhang · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  23. lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals
    Andrey Ziyatdinov, Miquel Vázquez-Santiago, Héléna Brunel, Ángel Martínez-Pérez, Hugues Aschard, José Manuel Soria · 2018 · BMC Bioinformatics
  24. GWAPP: A Web Application for Genome-Wide Association Mapping in Arabidopsis
    Ümit Seren, Bjarni Jóhann Vilhjálmsson, Matthew Horton, Dazhe Meng, Petar Forai, Yu Shu Huang, Quan Long, Vincent Segura, Magnus Nordborg · 2012 · The Plant Cell
  25. Structural variants in 3000 rice genomes
    Roven Rommel Fuentes, Dmytro Chebotarov, Jorge Duitama, Sean Smith, Juan De La Hoz, Marghoob Mohiyuddin, Rod A. Wing, Kenneth L. McNally, Tatiana V. Tatarinova, Andrey Grigoriev et al. · 2019 · Genome Research
  26. GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank
    Helena R. R. Wells, Maxim B. Freidin, Fatin N. Zainul Abidin, Antony Payton, Piers Dawes, Kevin James Munro, Cynthia Casson Morton, David R. Moore, Sally J. Dawson, Frances M. K. Williams · 2019 · The American Journal of Human Genetics
  27. High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
    Zhi-Ying Ma, Yan Zhang, Li-Qiang Wu, Gui-Yin Zhang, Zheng-Wen Sun, Zhi-Kun Li, Yafei Jiang, H. Ke, Bin Chen, Zheng-Wen Liu et al. · 2021 · Nature Genetics
  28. Genomic insights into the origin, domestication and diversification of Brassica juncea
    Lei Kang, Lunwen Qian, Ming Zheng, Liyang Chen, Hao Chen, Liu Yang, Liang You, Bin Juan Yang, Mingli Yan, Yuanguo Gu et al. · 2021 · Nature Genetics
  29. Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease
    Marigorta, Urko M, Denson, Lee A, Hyams, Jeffrey S, Mondal, Kajari, Prince, Jarod, Walters, Thomas D, Griffiths, Anne, Noe, Joshua D, Crandall, Wallace V, Rosh, Joel R et al. · 2017 · Nature Genetics
  30. Harnessing landrace diversity empowers wheat breeding
    Shifeng Cheng, Cong Feng, Luzie U. Wingen, Hong Cheng, A. B. Riche, Mei Jiang, Michelle Leverington‐Waite, Zejian Huang, Sarah Collier, Simon Orford et al. · 2024 · Nature
  31. The giant diploid faba genome unlocks variation in a global protein crop
    Murukarthick Jayakodi, Agnieszka A. Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphaël Boussageon, Sukhjiwan Kaur et al. · 2023 · Nature
  32. Genetic mapping of canine fear and aggression
    Zapata, Isain, Serpell, James A., Alvarez, Carlos E. · 2016 · BMC Genomics
  33. Detecting Polygenic Evolution: Problems, Pitfalls, and Promises
    Maren Wellenreuther, Bengt Hansson · 2016 · Trends in Genetics
  34. Association mapping in plants in the post-GWAS genomics era
    Pushpendra Kumar Gupta, Pawan L. Kulwal, Vandana Jaiswal · 2019 · Advances in genetics
  35. OSCA: a tool for omic-data-based complex trait analysis
    Futao Zhang, Wenhan Chen, Zhihong Zhu, Qian Zhang, Marta F. Nabais, Ting Qi, Ian J. Deary, Naomi R. Wray, Peter M. Visscher, Allan F. McRae et al. · 2019 · Genome biology
  36. Genetic architecture of gene expression traits across diverse populations
    Lauren S. Mogil, Angela Andaleon, Alexa Badalamenti, Scott P. Dickinson, Xiuqing Guo, Jerome I. Rotter, W. Craig Johnson, Hae Kyung Im, Yongmei Liu, Heather E. Wheeler · 2018 · PLoS Genetics
  37. Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding
    Jihong Hu, Bi-Yun Chen, Jing Zhao, Fu-Gui Zhang, Ting Xie, Kun Xu, Gui-Zhen Gao, G. Yan, Hong-Ge Li, Li-Xia Li et al. · 2022 · Nature Genetics
  38. Genetic variation influencing DNA methylation provides insights into molecular mechanisms regulating genomic function
    Johann S. Hawe, Rory Wilson, Katharina Schmid, Li Zhou, Lakshmi Narayanan Lakshmanan, Benjamin C. Lehne, Brigitte Kühnel, William R. Scott, Matthias Wielscher, Yik Weng Yew et al. · 2022 · Nature Genetics
  39. Genome‐Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture
    Marta Eugenia Alarcón-Riquelme, Julie T. Ziegler, Julio E. Molineros, Timothy D. Howard, Andrés Moreno‐Estrada, Elena Sánchez, Hannah C. Ainsworth, Patricia A. Ortiz-Tello, Mary E. Comeau, Astrid Rasmussen et al. · 2015 · Arthritis & Rheumatology
  40. The genetic mechanism of heterosis utilization in maize improvement
    Yingjie Xiao, Shuqin Jiang, Qian Cheng, Xiaqing Wang, Jun Yan, Ruyang Zhang, Feng Qiao, Chuang Ma, Jingyun Luo, Wenqiang Li et al. · 2021 · Genome biology
  41. Bayesian large-scale multiple regression with summary statistics from genome-wide association studies
    Xiang Zhu, Matthew Stephens · 2017 · The Annals of Applied Statistics
  42. Polygenic Epidemiology
    Frank Dudbridge · 2016 · Genetic Epidemiology
  43. Population genomics and the evolution of virulence in the fungal pathogen <i>Cryptococcus neoformans</i>
    Desjardins, Christopher A., Giamberardino, Charles, Sykes, Sean M., Yu, Chen-Hsin, Tenor, Jennifer L., Chen, Yuan, Yang, Timothy, Jones, Alexander M., Sun, Sheng, Haverkamp, Miriam R. et al. · 2017 · Genome Research
  44. Association Mapping in Crop Plants
    Pushpendra Kumar Gupta, Pawan L. Kulwal, Vandana Jaiswal · 2014 · Advances in genetics
  45. Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT 2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
    Jin Zhang, Yongil Yang, Kaijie Zheng, Meng Xie, Kai Feng, Sara S. Jawdy, Lee E. Gunter, Priya Ranjan, Vasanth R. Singan, Nancy L. Engle et al. · 2018 · New Phytologist
  46. GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet
    Yayu Wang, Xiaolin Wang, Shuai Sun, Canzhi Jin, Jianmu Su, Jinpu Wei, Xinyue Luo, Jiawen Wen, Tong Wei, Sunil Kumar Sahu et al. · 2022 · Nature Communications
  47. From association to prediction: statistical methods for the dissection and selection of complex traits in plants
    Alexander Edward Lipka, Catherine B. Kandianis, Matthew E. Hudson, Jianming Yu, Jenny M. Drnevich, Peter J. Bradbury, Michael A. Gore · 2015 · Current Opinion in Plant Biology
  48. Structural variation in the pangenome of wild and domesticated barley
    Murukarthick Jayakodi, Qiongxian Lu, Hélène Pidon, M. Timothy Rabanus‐Wallace, Micha Bayer, Thomas M. Lux, Yu Guo, Benjamin Jaegle, Ana Badea, Wubishet A. Bekele et al. · 2024 · Nature
  49. Functional annotation and Bayesian fine-mapping reveals candidate genes for important agronomic traits in Holstein bulls
    Jicai Jiang, John B. Cole, Ellen Freebern, Yang Da, Paul Michael VanRaden, Li Ma · 2019 · Communications Biology
  50. Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues
    Heather E. Wheeler, Kaanan P. Shah, Jonathon Brenner, Tzintzuni Garcia, Keston Aquino-Michaels, Nancy Jean Cox, Dan L. Nicolae, Hae Kyung Im · 2016 · PLoS Genetics
  51. The Genetics of Seasonal Migration and Plumage Color
    Kira E. Delmore, David P. L. Toews, Ryan R. Germain, Gregory L. Owens, Darren E. Irwin · 2016 · Current Biology
  52. Highly heritable and functionally relevant breed differences in dog behaviour
    MacLean, Evan L., Snyder-Mackler, Noah, vonHoldt, Bridgett M., Serpell, James A. · 2019 · Proceedings of the Royal Society B: Biological Sciences
  53. Genome-wide association study implicates novel loci and reveals candidate effector genes for longitudinal pediatric bone accrual
    Diana L. Cousminer, Yadav Wagley, James A. Pippin, Ahmed Elhakeem, Gregory P. Way, Matthew C. Pahl, Shana Erin McCormack, Alessandra Chesi, Jonathan A. Mitchell, Joseph M. Kindler et al. · 2021 · Genome biology
  54. Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes
    Vincenzo Forgetta, Despoina Manousaki, Roman Istomine, Stephanie A. Ross, Marie-Catherine Tessier, Luc Marchand, Min Li, Hui‐Qi Qu, Jonathan P. Bradfield, Struan F.A. Grant et al. · 2020 · Diabetes
  55. A compressed variance component mixed model for detecting QTNs and QTN-by-environment and QTN-by-QTN interactions in genome-wide association studies
    Mei Li, Yawen Zhang, Ze-Chang Zhang, Yu Xiang, Ming-Hui Liu, Ya-Hui Zhou, Jian-Fang Zuo, Hanqing Zhang, Ying Chen, Yuan‐Ming Zhang · 2022 · Molecular Plant
  56. Ancestry estimation and control of population stratification for sequence-based association studies
    The FUSION Study, Chaolong Wang, Xiaowei Zhan, Jennifer L. Bragg‐Gresham, Hyun Min Kang, Dwight E. Stambolian, Emily Y. Chew, Kari E. H. Branham, John R. Heckenlively, Robert S. Fulton et al. · 2014 · Nature Genetics
  57. Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays
    Paul Bilinski, Patrice S. Albert, Jeremy J. Berg, James A. Birchler, Mark N. Grote, Anne Lorant, Juvenal Quezada, Kelly Swarts, Jinliang Yang, Jeffrey Ross‐Ibarra · 2018 · PLoS Genetics
  58. Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans
    Cade, Brian E., Chen, Han, Stilp, Adrienne M., Gleason, Kevin J., Sofer, Tamar, Ancoli-Israel, Sonia, Arens, Raanan, Bell, Graeme I., Below, Jennifer E., Bjonnes, Andrew C. et al. · 2016 · American Journal of Respiratory and Critical Care Medicine
  59. Association of a Novel Mutation in the Plasmodium falciparum Chloroquine Resistance Transporter With Decreased Piperaquine Sensitivity
    Sonia Agrawal, Kara A. Moser, Lindsay Carol Morton, Michael P. Cummings, Ankita Parihar, Ankit Dwivedi, Amol Carl Shetty, Elliott Franco Drábek, Christopher G. Jacob, Philipp P. Henrich et al. · 2017 · The Journal of Infectious Diseases
  60. Long-range epigenetic regulation is conferred by genetic variation located at thousands of independent loci
    Mathieu Lemire, Syed Hassan Ejaz Zaidi, Maria Ban, Bing Ge, Dylan Aïssi, Marine Germain, Irfahan Kassam, Mike Wang, Brent W. Zanke, France Gagnon et al. · 2015 · Nature Communications
  61. Wild GWAS—association mapping in natural populations
    Anna W. Santure, Dany Garant · 2018 · Molecular Ecology Resources
  62. What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species
    C. Ryan Campbell, Jelmer W. Poelstra, Anne D. Yoder · 2018 · Biological Journal of the Linnean Society
  63. High‐density molecular characterization and association mapping in Ethiopian durum wheat landraces reveals high diversity and potential for wheat breeding
    Dejene K. Mengistu, Yosef Gebrehawaryat, Marcello Catellani, Elisabetta Frascaroli, Carlo Fadda, Mario Enrico Pè, Matteo Dell’Acqua · 2016 · Plant Biotechnology Journal
  64. Blood-Derived DNA Methylation Signatures of Crohn's Disease and Severity of Intestinal Inflammation
    Rajendra Prasad Somineni, Suresh Venkateswaran, Varun Kilaru, Urko M. Marigorta, Angela Mo, David T. Okou, Richárd Kellermayer, Kajari Mondal, Dawayland O. Cobb, Thomas D. Walters et al. · 2019 · Gastroenterology
  65. Genetic prediction of complex traits with polygenic scores: a statistical review
    Ying Ma, Xiang Zhou · 2021 · Trends in Genetics
  66. Testing and controlling for horizontal pleiotropy with probabilistic Mendelian randomization in transcriptome-wide association studies
    Zhongshang Yuan, Huanhuan Zhu, Ping Zeng, Sheng Yang, Shiquan Sun, Can Yang, Jin Liu, Xiang Zhou · 2020 · Nature Communications
  67. Deciphering the complex: Methodological overview of statistical models to derive OMICS‐based biomarkers
    Marc Chadeau‐Hyam, Gianluca Campanella, Thibaut Jombart, Leonardo Bottolo, Lützen Portengen, Paolo Vineis, Benoît Liquet, Roel C.H. Vermeulen · 2013 · Environmental and Molecular Mutagenesis
  68. Identification of new susceptibility loci for IgA nephropathy in Han Chinese
    Ming Li, Jia Nee Foo, Jin Quan Wang, Hui-Qi Low, Xue-Qing Tang, Kai Yee Toh, Pei-Ran Yin, Chiea Chuen Khor, Yu-Fen Goh, Ishak Darryl Irwan et al. · 2015 · Nature Communications
  69. Advances in genome-wide association studies of complex traits in rice
    Qin Wang, Tang Jiali, Bin Han, Xuehui Huang · 2019 · Theoretical and Applied Genetics
  70. Genetic associations with suicide attempt severity and genetic overlap with major depression
    Levey, Daniel F., Polimanti, Renato, Cheng, Zhongshan, Zhou, Hang, Nuñez, Yaira Z., Jain, Sonia, He, Feng, Sun, Xiaoying, Ursano, Robert J., Kessler, Ronald C. et al. · 2019 · Translational Psychiatry
  71. Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance
    Gustavo Coutinho Cerqueira, Ian H. Cheeseman, Stephen F. Schaffner, Shalini Nair, Marina McDew‐White, Aung Pyae Phyo, Elizabeth A. Ashley, Alexandre Melnikov, Peter Rogov, Bruce W. Birren et al. · 2017 · Genome biology
  72. Genome-wide association study of berry-related traits in grape [Vitis vinifera L.] based on genotyping-by-sequencing markers
    Da‐Long Guo, Huili Zhao, Qiong Li, Guohai Zhang, Jianfu Jiang, Chonghuai Liu, Yi‐He Yu · 2018 · Horticulture Research
  73. A unified framework for variance component estimation with summary statistics in genome-wide association studies
    Xiang Zhou · 2017 · The Annals of Applied Statistics
  74. Genome-wide association analysis of egg production performance in chickens across the whole laying period
    Zhuang Liu, Ning Yang, Yiyuan Yan, Guangqi Li, Aiqiao Liu, Guiqin Wu, Congjiao Sun · 2019 · BMC Genetics
  75. A Lasso multi-marker mixed model for association mapping with population structure correction
    Barbara Rakitsch, Christoph Lippert, Oliver Stegle, Karsten Michael Borgwardt · 2012 · Bioinformatics
  76. A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes
    Ran Li, Mian Gong, Xinmiao Zhang, Fei Wang, Zhenyu Liu, Lei Zhang, Qimeng Yang, Yuan Xu, Mengsi Xu, Huanhuan Zhang et al. · 2023 · Genome Research
  77. Heritability of variation in glycaemic response to metformin: a genome-wide complex trait analysis
    Kaixin Zhou, Louise A. Donnelly, Jian Yang, Miaoxin Li, Harshal Deshmukh, Natalie Van Zuydam, Emma Ahlqvist, Chris C. A. Spencer, Leif Groop, Andrew D. Morris et al. · 2014 · The Lancet Diabetes & Endocrinology
  78. The genetic architecture of gene expression levels in wild baboons
    Jenny Tung, Xiang Zhou, Susan C. Alberts, Matthew Stephens, Yoav Gilad · 2015 · eLife
  79. The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication
    Hongru Wang, Xun Xu, Filipe Garrett Vieira, Yunhua Xiao, Zhikang Li, Jun Wang, Rasmus Nielsen, Chengcai Chu · 2016 · Molecular Plant
  80. Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents
    Docherty, Anna R., Shabalin, Andrey A., DiBlasi, Emily, Monson, Eric, Mullins, Niamh, Adkins, Daniel E., Bacanu, Silviu-Alin, Bakian, Amanda V., Crowell, Sheila, Chen, Danli et al. · 2020 · American Journal of Psychiatry
  81. Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes
    Ruth, Katherine S, Campbell, Purdey J, Chew, Shelby, Lim, Ee Mun, Hadlow, Narelle, Stuckey, Bronwyn GA, Brown, Suzanne J, Feenstra, Bjarke, Joseph, John, Surdulescu, Gabriela L et al. · 2016 · European Journal of Human Genetics
  82. Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data
    Jakris Eu‐ahsunthornwattana, E. Nancy Miller, Michaela Fakiola, Selma M. B. Jerônimo, Jenefer Mary Blackwell, Heather Jane Cordell · 2014 · PLoS Genetics
  83. Host and microbiome multi-omics integration: applications and methodologies
    Qing Wang, Kaicen Wang, Wenrui Wu, Eleni Giannoulatou, Joshua W. K. Ho, Lanjuan Li · 2019 · Biophysical Reviews
  84. Plant genetic effects on microbial hubs impact host fitness in repeated field trials
    Benjamin Brachi, Danièle L. Filiault, Hannah Whitehurst, Paul Darme, Pierre Le Gars, Marine Le Mentec, Timothy C. Morton, Envel Kerdaffrec, Fernando A. Rabanal, Alison Anastasio et al. · 2022 · Proceedings of the National Academy of Sciences
  85. Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions
    Leslie M. Turner, Bettina Harr · 2014 · eLife
  86. A Genome-Wide Association Study of a Biomarker of Nicotine Metabolism
    Anu Loukola, Jadwiga Buchwald, Richa Gupta, Teemu Palviainen, Jenni Hällfors, Emmi Tikkanen, Tellervo Korhonen, Miina Ollikainen, Antti‐Pekka Sarin, Samuli Ripatti et al. · 2015 · PLoS Genetics
  87. Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice
    Clarissa C. Parker, Shyam Gopalakrishnan, Peter S. Carbonetto, Natalia M. Gonzales, Emily Leung, Yeonhee J Park, Emmanuel Aryee, Joe R. Davis, David A. Blizard, Cheryl L. Ackert‐Bicknell et al. · 2016 · Nature Genetics
  88. Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations
    Timothy A. Crombie, Stefan Zdraljevic, Daniel E. Cook, Robyn E. Tanny, Shannon C. Brady, Ye Wang, Kathryn S. Evans, Steffen R. Hahnel, Daehan Lee, Briana C. Rodriguez et al. · 2019 · eLife
  89. Global range expansion history of pepper ( Capsicum spp.) revealed by over 10,000 genebank accessions
    Pasquale Tripodi, M. Timothy Rabanus‐Wallace, Lorenzo Barchi, Sandip Mallikarjun Kale, Salvatore Esposito, Alberto Acquadro, Roland Schafleitner, Maarten van Zonneveld, Jaime Prohens, María José Díez et al. · 2021 · Proceedings of the National Academy of Sciences
  90. Evidences for a role of two Y-specific genes in sex determination in Populus deltoides
    Liang‐Jiao Xue, Huaitong Wu, Yingnan Chen, Xiaoping Li, Jing Hou, Jing Lü, Suyun Wei, Xiaogang Dai, Matthew S. Olson, Jianquan Liu et al. · 2020 · Nature Communications
  91. The Genetics of Canine Skull Shape Variation
    Jeffrey J. Schoenebeck, Elaine A. Ostrander · 2013 · Genetics
  92. Multivariate simulation framework reveals performance of multi-trait GWAS methods
    Heather F. Porter, Paul F. O’Reilly · 2017 · Scientific Reports
  93. Mapping Quantitative Trait Loci by Controlling Polygenic Background Effects
    Shizhong Xu · 2013 · Genetics
  94. The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice
    Yanru Cui, Fan Zhang, Yongli Zhou · 2018 · Frontiers in Plant Science
  95. Multitrait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits
    Hari Bahadur Chhetri, David Macaya‐Sanz, David Kainer, Ajaya Kumar Biswal, Luke M. Evans, Jin‐Gui Chen, Cassandra Collins, Kimberly Hunt, Sushree S. Mohanty, Todd N. Rosenstiel et al. · 2019 · New Phytologist
  96. High-throughput allele-specific expression across 250 environmental conditions
    Gregory A. Moyerbrailean, Allison L. Richards, Daniel A. Kurtz, Cynthia A. Kalita, Gordon O. Davis, Chris T. Harvey, Adnan Alazizi, Donovan Watza, Yoram Sorokin, N. Hauff et al. · 2016 · Genome Research
  97. Genetic Architecture of Feeding Behavior and Feed Efficiency in a Duroc Pig Population
    Rongrong Ding, Ming Jun Yang, Xingwang Wang, Jianping Quan, Zhanwei Zhuang, Shenping Zhou, Shaoyun Li, Zheng Xu, Enqin Zheng, Gengyuan Cai et al. · 2018 · Frontiers in Genetics
  98. Detecting Polygenic Adaptation in Admixture Graphs
    Fernando Racimo, Jeremy J. Berg, Joseph K. Pickrell · 2018 · Genetics
  99. Efficient Variant Set Mixed Model Association Tests for Continuous and Binary Traits in Large-Scale Whole-Genome Sequencing Studies
    Han Chen, Jennifer E. Huffman, Jennifer A. Brody, Chaolong Wang, Seunggeun Lee, Zilin Li, Stephanie M. Gogarten, Tamar Sofer, Lawrence F. Bielak, Joshua C. Bis et al. · 2019 · The American Journal of Human Genetics
  100. Genetic modifiers of Huntington disease differentially influence motor and cognitive domains
    Jong‐Min Lee, Yuan Huang, Michael Orth, Tammy Gillis, Jacqueline Siciliano, Eunpyo Hong, Jayalakshmi Srinidhi Mysore, Diane E. Lucente, Vanessa C. Wheeler, Ihn Sik Seong et al. · 2022 · The American Journal of Human Genetics