Genome-wide efficient mixed-model analysis for association studies

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1. Evaluation of Genomic Prediction for Pasmo Resistance in Flax
   Liqiang He, Jin Xiao, Khalid Y. Rashid, Gaofeng Jia, Pingchuan Li, Zhen Yao, Xiue Wang, Sylvie Cloutier, Frank M. You · 2019 · International Journal of Molecular Sciences
2. Large‐effect loci affect survival in Tasmanian devils ( Sarcophilus harrisii ) infected with a transmissible cancer
   Mark J. Margres, Menna E. Jones, Brendan Epstein, Douglas H. Kerlin, Sébastien Comte, Samantha Fox, Alexandra K. Fraik, Sarah A. Hendricks, Stewart J. Huxtable, Shelly Lachish et al. · 2018 · Molecular Ecology
3. Action detection using a neural network elucidates the genetics of mouse grooming behavior
   Brian Q. Geuther, Asaf Peer, Hao He, Gautam S. Sabnis, Vivek M. Philip, Vivek Kumar · 2021 · eLife
4. Polygenic risk scores in familial Alzheimer disease
   Giuseppe Tosto, Thomas D. Bird, Debby W. Tsuang, David Bennett, Bradley F. Boeve, Carlos Cruchaga, Kelley M. Faber, Tatiana Foroud, Martin Rhys Farlow, Alison Goate et al. · 2017 · Neurology
5. Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites
   Vincenza Colonna, Nunzio D’Agostino, Erik P. Garrison, Anders Albrechtsen, Jonas Meisner, Angelo M. Facchiano, Teodoro Cardi, Pasquale Tripodi · 2019 · Scientific Reports
6. Gene regulation underlies environmental adaptation in house mice
   Katya L. Mack, Mallory A. Ballinger, Megan Phifer‐Rixey, Michael W. Nachman · 2018 · Genome Research
7. Increased Power and Accuracy of Causal Locus Identification in Time Series Genome-wide Association in Sorghum
   Chenyong Miao, Yuhang Xu, Sanzhen Liu, Patrick S. Schnable, James C. Schnable · 2020 · PLANT PHYSIOLOGY
8. A meta-analysis of genome-wide association studies for average daily gain and lean meat percentage in two Duroc pig populations
   Shenping Zhou, Rongrong Ding, Fanming Meng, Xingwang Wang, Zhanwei Zhuang, Jianping Quan, Qian Geng, Jie Wu, Enqin Zheng, Zhenfang Wu et al. · 2021 · BMC Genomics
9. Phenotyping stomatal closure by thermal imaging for GWAS and TWAS of water use efficiency-related genes
   Charles P. Pignon, Samuel B. Fernandes, Ravi Valluru, Nonoy B. Bandillo, Roberto Daniel Lozano, Edward S. Buckler, Michael A. Gore, Stephen P. Long, Patrick J. Brown, Andrew D. B. Leakey · 2021 · PLANT PHYSIOLOGY
10. Use of a natural hybrid zone for genomewide association mapping of craniofacial traits in the house mouse
    Luisa F. Pallares, Bettina Harr, Leslie M. Turner, Diethard Tautz · 2014 · Molecular Ecology
11. Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance
    Yaa E. A. Oppong, Jody Emile Phelan, João Perdigão, Diana Machado, Anabela Miranda, Isabel Portugal, Miguel Viveiros, Taane Gregory Clark, Martin Lloyd Hibberd · 2019 · BMC Genomics
12. Determinants of QTL Mapping Power in the Realized Collaborative Cross
    Gregory R. Keele, Wesley L. Crouse, Samir N. P. Kelada, William S. J. Valdar · 2019 · G3 Genes Genomes Genetics
13. Identification of a novel genomic region associated with resistance to Fusarium crown rot in wheat
    Jingjing Jin, Shuonan Duan, Yongzhi Qi, Su-Hong YAN, Wei L. Li, Baoyun Li, Chaojie Xie, Wenchao Zhen, Jun Ma · 2020 · Theoretical and Applied Genetics
14. Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens
    Guoqiang Yi, Manman Shen, Jingwei Yuan, Congjiao Sun, Zhongyi Duan, Liang Qu, Taocun Dou, Meng Ma, Jian Lü, Jun Guo et al. · 2015 · BMC Genomics
15. Practical Considerations Regarding the Use of Genotype and Pedigree Data to Model Relatedness in the Context of Genome-Wide Association Studies
    Riyan Cheng, Clarissa C. Parker, Mark Abney, Abraham A. Palmer · 2013 · G3 Genes Genomes Genetics
16. Genome-Wide Association Study for Reproductive Traits in a Duroc Pig Population
    Zhe Zhang, Zitao Chen, Shaopan Ye, Yingting He, Shuwen Huang, Xiaolong Yuan, Zanmou Chen, Hao Zhang, Jiaqi Li · 2019 · Animals
17. New insights into the associations among feed efficiency, metabolizable efficiency traits and related QTL regions in broiler chickens
    Ranran Liu, Ranran Liu, Maiqing Zheng, Furong Feng, Dawei Liu, Yuming Guo, Guiping Zhao, Jie Wen · 2020 · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology
18. Pepper variome reveals the history and key loci associated with fruit domestication and diversification
    Yacong Cao, Kang Zhang, Hailong Yu, Shumin Chen, Donghui Xu, Hong G. Zhao, Zhenghai Zhang, Yinqing Yang, Xiaozhen Gu, Xinyan Liu et al. · 2022 · Molecular Plant
19. Two decades of association mapping: Insights on disease resistance in major crops
    Sunil S. Gangurde, Alencar Xavier, Yogesh Dashrath Naik, Uday Chand Jha, Sagar Krushnaji Rangari, Raj Kumar, M. S. Sai Reddy, Sonal Channale, Dinakaran Elango, Reyazul Rouf Mir et al. · 2022 · Frontiers in Plant Science
20. Sugar transporter modulates nitrogen-determined tillering and yield formation in rice
    Jinfei Zhang, Yuyi Zhang, Jingguang Chen, Mengfan Xu, Xinyu Guan, Cui Wu, Shunan Zhang, Hongye Qu, Jinfang Chu, Yifeng Xu et al. · 2024 · Nature Communications
21. Genetic modifiers of somatic expansion and clinical phenotypes in Huntington’s disease highlight shared and tissue-specific effects
    Group 1, Jong‐Min Lee, Zachariah L. McLean, Kevin Correia, Jun Wan Shin, Sujin Lee, Jae-Hyun Jang, Yukyeong Lee, Kyung‐Hee Kim, Doo Eun Choi et al. · 2025 · Nature Genetics
22. Genomic analysis establishes correlation between growth and laryngeal neuropathy in Thoroughbreds
    Adam R. Boyko, Samantha A. Brooks, Ashley Braman, Marta G. Castelhano, Elizabeth E. Corey, Kyle C. Oliveira, June E. Swinburne, Rory J. Todhunter, Zhiwu Zhang, Dorothy Marie Ainsworth et al. · 2014 · BMC Genomics
23. Imputation-Based Whole-Genome Sequence Association Study Rediscovered the Missing QTL for Lumbar Number in Sutai Pigs
    Guorong Yan, Ruimin Qiao, Feng Zhang, Wenshui Xin, Shijun Xiao, Tao Huang, Zhiyan Zhang, Lusheng Huang · 2017 · Scientific Reports
24. Integrative Population and Physiological Genomics Reveals Mechanisms of Adaptation in Killifish
    Reid S. Brennan, Timothy M. Healy, Heather J. Bryant, van Es La, Patricia M. Schulte, Andrew Whitehead · 2018 · Molecular Biology and Evolution
25. High-resolution mapping of cis -regulatory variation in budding yeast
    Ryosuke Kita, Sandeep Venkataram, Yiqi Zhou, Hunter B. Fraser · 2017 · Proceedings of the National Academy of Sciences
26. Identification of QTL regions and candidate genes for growth and feed efficiency in broilers
    Ranran Liu, Maiqing Zheng, Guiping Zhao, Jie Wang, Jie Liu, Shunli Wang, Furong Feng, Dawei Liu, Dan Yan Zhu, Qinghe Li et al. · 2021 · Genetics Selection Evolution
27. Inflammation status modulates the effect of host genetic variation on intestinal gene expression in inflammatory bowel disease
    Hu, Shixian, Uniken Venema, Werna T., Westra, Harm-Jan, Vich Vila, Arnau, Barbieri, Ruggero, Voskuil, Michiel D., Blokzijl, Tjasso, Jansen, Bernadien H., Li, Yanni, Daly, Mark J. et al. · 2021 · Nature Communications
28. Association Mapping of Seedling Resistance to Spot Form Net Blotch in a Worldwide Collection of Barley
    Prabin Tamang, Anjan Neupane, Sujan Mamidi, Timothy L. Friesen, Robert Saxon Brueggeman · 2015 · Phytopathology
29. Testing for genetic associations in arbitrarily structured populations
    Minsun Song, Wei Hao, John D. Storey · 2015 · Nature Genetics
30. Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
    Zengkui Lu, Yaojing Yue, Chao Yuan, Jianbin Liu, Zhiqiang Chen, Chune Niu, Xiaoping Sun, Shaohua Zhu, Hongchang Zhao, Tingting Guo et al. · 2020 · Animals
31. An evolutionary population structure model reveals pleiotropic effects ofGmPDATfor traits related to seed size and oil content in soybean
    Jinyang Liu, Yawen Zhang, Xu Han, Jian‐Fang Zuo, Hǎihóng Shāng, Haihong Shang, Qijian Song, Yuan‐Ming Zhang · 2020 · Journal of Experimental Botany
32. Genome-Wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2
    Hernandez Cordero, Ana I., Gonzales, Natalia M., Parker, Clarissa C., Sokolof, Greta, Vandenbergh, David J., Cheng, Riyan, Abney, Mark, Sko, Andrew, Douglas, Alex, Palmer, Abraham A. et al. · 2019 · The American Journal of Human Genetics
33. Farm CPU pp: Efficient large‐scale genomewide association studies
    Aaron Kusmec, Patrick S. Schnable · 2018 · Plant Direct
34. Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota
    Sachiko Ishida, Kumiko Kato, Masami Tanaka, Toshitaka Odamaki, Ryuichi Kubo, Eri Mitsuyama, Jin‐zhong Xiao, Rui Yamaguchi, Satoshi Uematsu, Seiya Imoto et al. · 2020 · Communications Biology
35. Association analyses of host genetics, root-colonizing microbes, and plant phenotypes under different nitrogen conditions in maize
    Michael A. Meier, Gen Xu, Martha Lopez‐Guerrero, Guangyong Li, Christine Smith, Brandi Sigmon, Joshua R. Herr, James R. Alfano, Yufeng Ge, James C. Schnable et al. · 2022 · eLife
36. Genome-wide association study for rotator cuff tears identifies two significant single-nucleotide polymorphisms
    Robert Z. Tashjian, Erin K. Granger, James M. Farnham, Lisa Cannon‐Albright, Craig Carl Teerlink · 2015 · Journal of Shoulder and Elbow Surgery
37. Significant association of full-thickness rotator cuff tears and estrogen-related receptor-β (ESRRB)
    Craig Carl Teerlink, Lisa Cannon‐Albright, Robert Z. Tashjian · 2014 · Journal of Shoulder and Elbow Surgery
38. Genome‐wide association analyses reveal the genetic basis of combining ability in rice
    Junxiao Chen, Hao Zhou, Weibo Xie, Duo Xia, Guanjun Gao, Qinglu Zhang, Gongwei Wang, Xingming Lian, Jinghua Xiao, Yuqing He · 2019 · Plant Biotechnology Journal
39. Combining population genomics and fitness QTLs to identify the genetics of local adaptation in Arabidopsis thaliana
    Nicholas C. Price, Brook T. Moyers, Lúa López, Jesse R. Lasky, J. Grey Monroe, Jack L. Mullen, Christopher G. Oakley, Junjiang Lin, Jon Ågren, Daniel R. Schrider et al. · 2018 · Proceedings of the National Academy of Sciences
40. A whole-genome sequence based association study on pork eating quality traits and cooking loss in a specially designed heterogeneous F6 pig population
    Jiuxiu Ji, Lisheng Zhou, Yizhong Huang, Min Zheng, Xianxian Liu, Yifeng Zhang, Cong Xin Huang, Song Peng, Qingjie Zeng, Liepeng Zhong et al. · 2018 · Meat Science
41. Genotypes and Genomic Regions Associated With Rhizoctonia solani Resistance in Common Bean
    Atena Oladzad, Kimberly K. Zitnick-Anderson, Shalu Jain, Kristin J. Simons, Juan Manuel Osorno, Phillip E. McClean, Julie S. Pasche · 2019 · Frontiers in Plant Science
42. Whole-genome analyses identify loci and selective signals associated with body size in cattle
    Qiuming Chen, Bizhi Huang, Jingxi Zhan, Junjie Wang, Kaixing Qu, Fengwei Zhang, Jiafei Shen, Peng Jia, Qingqing Ning, Jicai Zhang et al. · 2020 · Journal of Animal Science
43. Efficient mixed model approach for large-scale genome-wide association studies of ordinal categorical phenotypes
    Wenjian Bi, Wei Zhou, Rounak Dey, Bhramar Mukherjee, Joshua Neil Sampson, Seunggeun Lee · 2021 · The American Journal of Human Genetics
44. Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages
    Andrea Fulgione, Célia Neto, Ahmed F. Elfarargi, Emmanuel Tergemina, Shifa Ansari, Mehmet Göktay, Herculano Andrade Dinis, Nina Döring, Pádraic J. Flood, Sofia Rodriguez-Pacheco et al. · 2022 · Nature Communications
45. Natural variation in Fatty Acid 9 is a determinant of fatty acid and protein content
    Zhaoming Qi, Chaocheng Guo, Haiyang Li, Hongmei Qiu, Hui Li, Cholnam Jong, Guolong Yu, Yu Zhang, Limin Hu, Xiaoxia Wu et al. · 2023 · Plant Biotechnology Journal
46. Genomic Regions Associated With Interspecies Communication in Dogs Contain Genes Related to Human Social Disorders
    Mia E. Persson, Dominic Wright, Lina S. V. Roth, Petros Batakis, Per Jensen · 2016 · Scientific Reports
47. Disease-specific regulation of gene expression in a comparative analysis of juvenile idiopathic arthritis and inflammatory bowel disease
    Angela Mo, Urko M. Marigorta, Dalia Arafat, Lai Hin Kimi Chan, Lori A. Ponder, Se Ryeong Jang, Jarod Prince, Subra Kugathasan, Sampath Prahalad, Greg C. Gibson · 2018 · Genome Medicine
48. Genome wide association analysis in a mouse advanced intercross line
    Natalia M. Gonzales, Jungkyun Seo, Ana I. Hernández Cordero, Celine L. St. Pierre, J.S. Gregory, Margaret G. Distler, Mark Abney, Stefan Canzar, Arimantas Lionikas, Abraham A. Palmer · 2018 · Nature Communications
49. Fast and flexible linear mixed models for genome-wide genetics
    Daniel E. Runcie, Lorin A. Crawford · 2019 · PLoS Genetics
50. Estimating the heritability of cognitive traits across dog breeds reveals highly heritable inhibitory control and communication factors
    Gitanjali E. Gnanadesikan, Brian A. Hare, Noah Snyder‐Mackler, Evan L. MacLean · 2020 · Animal Cognition
51. Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population
    Sergey A. Kornilov, Natalia Rakhlin, Roman A. Koposov, Maria Lee, Carolyn M. Yrigollen, Ahmet Okay Çağlayan, James S. Magnuson, Shrikant Mane, Joseph T. Chang, Elena L. Grigorenko · 2016 · PEDIATRICS
52. Semantic Segmentation of Sorghum Using Hyperspectral Data Identifies Genetic Associations
    Chenyong Miao, Alejandro Pages, Zheng Quan Xu, Eric Rodene, Jinliang Yang, James C. Schnable · 2020 · Plant Phenomics
53. Genome‐wide discovery of natural variation in pre‐mRNA splicing and prioritising causal alternative splicing to salt stress response in rice
    Huihui Yu, Qian Du, Malachy T. Campbell, Bin Yu, Harkamal Walia, Chi Zhang · 2021 · New Phytologist
54. Identification of candidate genomic regions for chicken egg number traits based on genome-wide association study
    Xiurong Zhao, Changsheng Nie, Jinxin Zhang, Xinghua Li, Tao Zhu, Zi Guan, Yu Chen, Liang Wang, Xueze Lv, Weifang Yang et al. · 2021 · BMC Genomics
55. Host genetic determinants drive compartment‐specific assembly of tea plant microbiomes
    Xiangfeng Tan, Hengtong Xie, Jingwen Yu, Yuefei Wang, Jianming M. Xu, Ping Xu, Bin Ma · 2022 · Plant Biotechnology Journal
56. Markhor-derived Introgression of a Genomic Region Encompassing PAPSS2 Confers High-altitude Adaptability in Tibetan Goats
    Chao Li, Yujiang Wu, Bingchun Chen, Yudong Cai, Jiazhong Guo, Alexander S. Leonard, Peter Kalds, Shiwei Zhou, Jingchen Zhang, Ping Zhou et al. · 2022 · Molecular Biology and Evolution
57. The basic helix‐loop‐helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance
    Fengping Du, Yinxiao Wang, Juan Wang, Yingbo Li, Yue Zhang, Xiuqin Zhao, Jianlong Xu, Zhikang Li, Tianyong Zhao, Wensheng Wang et al. · 2023 · Journal of Integrative Plant Biology
58. A trans-ethnic genome-wide association study identifies gender-specific loci influencing pediatric aBMD and BMC at the distal radius
    Alessandra Chesi, Jonathan A. Mitchell, Heidi J. Kalkwarf, Jonathan P. Bradfield, Joan M. Lappe, Shana Erin McCormack, Vicente Gilsanz, Sharon E. Oberfield, Hakon H. Hakonarson, J. Shepherd et al. · 2015 · Human Molecular Genetics
59. Analysis of large versus small dogs reveals three genes on the canine X chromosome associated with body weight, muscling and back fat thickness
    Jocelyn Plassais, Maud Rimbault, Falina J. Williams, Brian W. Davis, Jeffrey J. Schoenebeck, Elaine A. Ostrander · 2017 · PLoS Genetics
60. Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice
    Venea Dara Daygon, Mariafe N. Calingacion, Louise C. Forster, James J. De Voss, Brett D. Schwartz, Ben W. Ovenden, David E. Alonso, Susan R. McCouch, Mary J. Garson, Melissa Anne Fitzgerald · 2017 · Scientific Reports
61. Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis
    Yili Wu, Haiping Duan, Xiaocao Tian, Chunsheng Xu, Weijing Wang, Wenjie Jiang, Zengchang Pang, Dongfeng Zhang, Qihua Tan · 2018 · Frontiers in Genetics
62. Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes
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63. Constructing a High-Density Genetic Linkage Map for Large Yellow Croaker (Larimichthys crocea) and Mapping Resistance Trait Against Ciliate Parasite Cryptocaryon irritans
    Shengnan Kong, Qiaozhen Ke, Lin Chen, Zhixiong Zhou, Fei Pu, Ji Zhao, Huaqiang Bai, Wenzhu Peng, Peng Xu · 2019 · Marine Biotechnology
64. Detecting local genetic correlations with scan statistics
    Hanmin Guo, James J. Li, Qiongshi Lu, Lin Hou · 2021 · Nature Communications
65. A Scalable Bayesian Method for Integrating Functional Information in Genome-wide Association Studies
    Jingjing Yang, Lars G. Fritsche, Xiang Zhou, Gonçalo R. Abecasis · 2017 · The American Journal of Human Genetics
66. Mapping the serum proteome to neurological diseases using whole genome sequencing
    Png, Grace, Barysenka, Andrei, Repetto, Linda, Navarro, Pau, Shen, Xia, Pietzner, Maik, Wheeler, Eleanor, Wareham, Nicholas J., Langenberg, Claudia, Tsafantakis, Emmanouil et al. · 2021 · Nature Communications
67. Genomic consequences of domestication of the Siamese fighting fish
    Young Mi Kwon, Nathan Vranken, Carla Hoge, Madison R Lichak, Amy L. Norovich, Kerel X Francis, Julia Camacho-Garcia, Iliana Bista, Jonathan M. D. Wood, Shane McCarthy et al. · 2022 · Science Advances
68. Research progress and applications of genome‐wide association study in farm animals
    Xiaodong Tan, Zhengxiao He, Alan G. Fahey, Guiping Zhao, Ranran Liu, Jie Wen · 2023 · Animal Research and One Health
69. Mapping small-effect and linked quantitative trait loci for complex traits in backcross or DH populations via a multi-locus GWAS methodology
    Shibo Wang, Yang-Jun Wen, Wenlong Ren, Yuan-Li Ni, Jin Zhang, Jianying Feng, Yuan‐Ming Zhang · 2016 · Scientific Reports
70. Genome-Wide Association Study and QTL Meta-Analysis Identified Novel Genomic Loci Controlling Potassium Use Efficiency and Agronomic Traits in Bread Wheat
    Luqman Bin Safdar, Tayyaba Andleeb, Sadia Latif, Muhammad Jawad Umer, Minqiang Tang, Xiang Li, Shengyi Liu, Umar Masood Quraishi · 2020 · Frontiers in Plant Science
71. Evaluation of an HMGA2 variant for pleiotropic effects on height and metabolic traits in ponies
    Elaine M. Norton, Felipe Fagundes De Avila, Nichol E. Schultz, James R. Mickelson, Raymond J. Geor, Molly E. McCue · 2019 · Journal of Veterinary Internal Medicine
72. Imputation of 3 million SNPs in the Arabidopsis regional mapping population
    Bader Arouisse, Arthur Korte, Fred A. van Eeuwijk, Willem Kruijer · 2019 · The Plant Journal
73. Identification of QTLs for resistance to leaf spots in cultivated peanut (Arachis hypogaea L.) through GWAS analysis
    Hui Zhang, Ye Chu, Phat M. Dang, Yueyi Tang, Tao Jiang, Josh Paul Clevenger, Peggy Ozias‐Akins, C. Corley Holbrook, Ming Li Wang, Howard Campbell et al. · 2020 · Theoretical and Applied Genetics
74. Functional phenomics and genetics of the root economics space in winter wheat using high‐throughput phenotyping of respiration and architecture
    Haichao Guo, Habtamu Ayalew, Anand Seethepalli, Kundan Dhakal, Marcus Griffiths, Xuefeng Ma, Larry M. York · 2021 · New Phytologist
75. Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato
    Jie Ye, Xin Wang, Wenqian Wang, Huiyang Yu, Guo Ai, Changxing Li, Pengya Sun, Xianyu Wang, Jianhua Li, Bo Ouyang et al. · 2021 · PLANT PHYSIOLOGY
76. Genome-wide association and genotype by environment interactions for growth traits in U.S. Red Angus cattle
    Johanna L. Smith, Miranda L. Wilson, Sara M. Nilson, Troy N. Rowan, Robert D. Schnabel, Jared E. Decker, Christopher M. Seabury · 2022 · BMC Genomics
77. Limitations of principal components in quantitative genetic association models for human studies
    Yiqi Yao, Alejandro Ochoa · 2023 · eLife
78. Proteomic analysis of Alzheimer’s disease cerebrospinal fluid reveals alterations associated with APOE ε4 and atomoxetine treatment
    Eric B. Dammer, Anantharaman Shantaraman, Lingyan Ping, Duc Minh Duong, Ekaterina Sergeevna Gerasimov, Suda Parimala Ravindran, Valborg Guðmundsdóttir, Elisabet A. Frick, Gabriela Gómez, Keenan A. Walker et al. · 2024 · Science Translational Medicine
79. Natural variation of CTB5 confers cold adaptation in plateau japonica rice
    Haifeng Guo, Shilei Gao, Huahui Li, Jiazhen Yang, Jin Li, Yunsong Gu, Qijin Lou, Runbin Su, Wei Ye, Andong Zou et al. · 2025 · Nature Communications
80. Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture
    Lauren A. Baker, Brian W Kirkpatrick, Guilherme J. M. Rosa, Daniel Gianola B, Bruno Dourado Valente, Julia P. Sumner, Wendy I. Baltzer, Zhengling Hao, Emily E. Binversie, Nicola J. Volstad et al. · 2017 · PLoS ONE
81. Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat ( Avena sativa L.)
    Maryn O. Carlson, Gracia Montilla‐Bascón, Owen A. Hoekenga, Nicholas A. Tinker, Jesse Poland, Matheus Baseggio, Mark E. Sorrells, Jean‐Luc Jannink, Michael A. Gore, Trevor H. Yeats · 2019 · G3 Genes Genomes Genetics
82. A missense mutation in MYH1 is associated with susceptibility to immune-mediated myositis in Quarter Horses
    Carrie J. Finno, Giuliana Gianino, Sudeep Perumbakkam, Zoë J. Williams, Matthew H. Bordbari, Keri L. Gardner, Erin Burns, Sichong Peng, Sian A. Durward-Akhurst, Stephanie J. Valberg · 2018 · Skeletal Muscle
83. Selection on VPS13A linked to migration in a songbird
    David P. L. Toews, Scott A. Taylor, Henry M. Streby, Gunnar R. Kramer, Irby J. Lovette · 2019 · Proceedings of the National Academy of Sciences
84. Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle
    Johanna L. Smith, Miranda L. Wilson, Sara M. Nilson, Troy N. Rowan, David L. Oldeschulte, Robert D. Schnabel, Jared E. Decker, Christopher M. Seabury · 2019 · BMC Genomics
85. A genome-wide association study uncovers a critical role of the RsPAP2 gene in red-skinned Raphanus sativus L.
    Lianxue Fan, Yan Wang, Liang Xu, Mingjia Tang, Xiaoli Zhang, Jiali Ying, Li Cui, Junhui Dong, Liwang Liu · 2020 · Horticulture Research
86. Genome-Wide Association Study Reveals the PLAG1 Gene for Knuckle, Biceps and Shank Weight in Simmental Beef Cattle
    Yuxin Song, Lingyang Xu, Yan Chen, Lupei Zhang, Huijiang Gao, Bo Zhu, Hong Niu, Wengang Zhang, Jiangwei Xia, Xue Gao et al. · 2016 · PLoS ONE
87. Resequencing 250 Soybean Accessions: New Insights into Genes Associated with Agronomic Traits and Genetic Networks
    Chunming Yang, Jun Yan, Shuqin Jiang, Xia Li, Haowei Min, Xiangfeng Wang, Dongyun Hao · 2021 · Genomics Proteomics & Bioinformatics
88. Association of female reproductive tract microbiota with egg production in layer chickens
    Yuan Su, Shilin Tian, Diyan Li, Wei Zhu, Tao Wang, Shailendra Kumar Mishra, Ranlei Wei, Zhongxian Xu, Mengnan He, Xiaoling Zhao et al. · 2021 · GigaScience
89. Genome‐wide association and multi‐omics studies identify MGMT as a novel risk gene for Alzheimer's disease among women
    Jaeyoon Chung, Anjali Das, Xinyu Sun, Débora R. Sobreira, Yuk Yee Leung, Catherine Igartua, Sahar V. Mozaffari, Yi‐Fan Chou, Sam Thiagalingam, Jesse B Mez et al. · 2022 · Alzheimer s & Dementia
90. Complex genetic architecture underlying the plasticity of maize agronomic traits
    Minliang Jin, Haijun Liu, Xiangguo Liu, Tingting Guo, Jia Xuan Guo, Yuejia Yin, Yan Ji, Zhenxian Li, Jinhong Zhang, Xiaqing Wang et al. · 2023 · Plant Communications
91. A new tool called DISSECT for analysing large genomic data sets using a Big Data approach
    Oriol Canela‐Xandri, Andy S Law, Alan Gray, John Arthur Woolliams, Albert Tenesa · 2015 · Nature Communications
92. Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
    Paul Grabowski, Joseph Evans, Chris G. Daum, Shweta Deshpande, Kerrie Barry, Megan Kennedy, Guillaume P. Ramstein, Shawn M. Kaeppler, C. Robin Buell, Yiwei Jiang et al. · 2016 · New Phytologist
93. Inferences of genetic architecture of bill morphology in house sparrow using a high‐density SNP array point to a polygenic basis
    Sarah L. Lundregan, Ingerid J. Hagen, Jostein Gohli, Alina K. Niskanen, Petri Kemppainen, Thor Harald Ringsby, Thomas Kvalnes, Henrik Pärn, Bernt Rønning, Håkon Holand et al. · 2018 · Molecular Ecology
94. Profiles of Kelch mutations in Plasmodium falciparum across South Asia and their implications for tracking drug resistance
    Jyoti Chhibber‐Goel, Amit Kumar Sharma · 2019 · International Journal for Parasitology Drugs and Drug Resistance
95. Multi-trait transcriptome-wide association studies with probabilistic Mendelian randomization
    Lu Liu, Ping Zeng, Fuzhong Xue, Zhongshang Yuan, Xiang Zhou · 2021 · The American Journal of Human Genetics
96. Pervasive findings of directional selection realize the promise of ancient DNA to elucidate human adaptation
    Ali Akbari, Alison R. Barton, Steven Gazal, Zheng Li, Mohammadreza Kariminejad, Annabel Perry, Yating Zeng, Alissa Mittnik, Nick J. Patterson, Matthew Mah et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
97. Genome-wide association study reveals multiple novel SNPs and putative candidate genes associated with low oxygen tolerance in golden pompano Trachinotus ovatus (Linnaeus 1758)
    Lize San, Bao-Suo Liu, Bo Liu, Ke-Cheng Zhu, Liang Jie Guo, Hua‐Yang Guo, Nan Zhang, Shigui Jiang, Dian‐Chang Zhang · 2021 · Aquaculture
98. The functional genetic architecture of egg-laying and live-bearing reproduction in common lizards
    Hans Recknagel, Madeleine Carruthers, Andrey A. Yurchenko, Mohsen Nokhbatolfoghahai, Nicholas A. Kamenos, Maureen Bain, Kathryn R. Elmer · 2021 · Nature Ecology & Evolution
99. The genetic basis of spatial cognitive variation in a food-caching bird
    Carrie L. Branch, Georgy А. Semenov, Dominique N. Wagner, Benjamin R. Sonnenberg, Angela M. Pitera, Eli S. Bridge, Scott A. Taylor, Правосудов Владимир Витальевич · 2021 · Current Biology
100. GWAS and genomic prediction revealed potential for genetic improvement of large yellow croaker adapting to high plant protein diet
     Qiaozhen Ke, Jiaying Wang, Yulin Bai, Ji Zhao, Jie Gong, Yacheng Deng, Ang Qu, Ning Suo, Jia Chen, Tao Zhou et al. · 2022 · Aquaculture