Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

O'Connell, Richard J, Thon, Michael R, Hacquard, Stéphane, Amyotte, Stefan G, Kleemann, Jochen, Torres, Maria F, Damm, Ulrike, Buiate, Ester A +59 more·2012·Nature Genetics
DOI 10.1038/ng.2372

Cited by (1,000)

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  31. Additional file 3 of The histone deacetylase Cfhos2 is a key epigenetic factor regulating appressorium development and pathogenesis in apple Glomerella leaf spot fungus Colletotrichum fructicola
    Mengyu Cao, Zhaohui Zhang, Huanhuan Tian, Yu, Wei, Xuemei Zhao, Wenrui Yang, Rong Zhang, Guangyu Sun, Xiaofei Liang · 2022 · Figshare
  32. Additional file 4 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  33. Additional file 11 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  34. Additional file 13 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  35. Additional file 17 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  36. Additional file 5 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  37. Additional file 4 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  38. Additional file 5 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  39. Additional file 3 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  40. Additional file 1 of The histone deacetylase HOS2 controls pathogenicity through regulation of melanin biosynthesis and appressorium formation in Colletotrichum gloeosporioides
    Shike Liu, Qiannan Wang, Liu, Na, Hongli Luo, Chaozu He, Bang An · 2022 · Figshare
  41. Additional file 2 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  42. Additional file 3 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  43. Additional file 13 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  44. Additional file 2 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  45. Additional file 9 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  46. Additional file 1 of Evolutionary history of the cytochrome P450s from Colletotrichum species and prediction of their putative functional roles during host-pathogen interactions
    Jossué Ortiz-Álvarez, Sioly Becerra, Riccardo Baroncelli, García Hernández, Serenella Ana Sukno, Michael R. Thon · 2024 · Figshare
  47. Additional file 7 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  48. Additional file 16 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  49. Additional file 7 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  50. Additional file 15 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  51. Additional file 14 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  52. Additional file 10 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  53. Additional file 10 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  54. Additional file 6 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  55. Additional file 1 of Colletotrichum species pathogenic to strawberry: discovery history, global diversity, prevalence in China, and the host range of top two species
    Ying Ji, Xue Li, Qing‐Hua Gao, Chunnv Geng, Ke Duan · 2022 · Figshare
  56. Additional file 8 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot
    Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Zhang, Pingping, Pingliang Li, Caixia Wang, Na Liu, Baohua Li et al. · 2022 · Figshare
  57. Additional file 14 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Liu, Xia, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  58. Additional file 9 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  59. Additional file 6 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  60. Additional file 11 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Zhou, Rui, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  61. Additional file 8 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Liu, Xia, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  62. Additional file 8 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  63. Additional file 1 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  64. Additional file 15 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
  65. Additional file 12 of Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
    Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang, Ke Yang · 2021 · Figshare
  66. Additional file 12 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
    Hongcheng Fang, Xia Liu, Yuhui Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jian‐Ning Liu, Ke Yang · 2021 · Figshare
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  80. Comparative transcriptome analysis reveals EjWRKY33 acts as a positive regulator of resistance against Colletotrichum fructicola through salicylic acid signalling
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  81. Additional file 11 of Comparative transcriptomic analysis of races 1, 2, 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles
    Saidi R. Achari, Jacqueline Edwards, Ross Cameron Mann, Jatinder Kaur, Tim Sawbridge, Brett Anthony Summerell · 2021 · Figshare
  82. Additional file 1 of A dual RNA-seq analyses revealed dynamic arms race during the invasion of walnut by Colletotrichum gloeosporioides
    Li, Xichen, Yuhui Dong, Haiyi Yu, Zhao, Jing, Fei Yang, Weichen Song, Wang, Changxi, Jian Ning Liu, Qiang Liang, Wang, Yicheng et al. · 2024 · Figshare
  83. Additional file 1 of Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes
    Lee, Da-Young, Jongbum Jeon, Kim, Ki-Tae, Kyeongchae Cheong, Hyeunjeong Song, Gobong Choi, Jaeho Ko, Stephen Obol Opiyo, James C. Correll, Zuo, Shimin et al. · 2021 · Figshare
  84. Additional file 6 of Comparative transcriptomic analysis of races 1, 2, 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles
    Saidi R. Achari, Jacqueline Edwards, Ross Cameron Mann, Jatinder Kaur, Tim Sawbridge, Brett Anthony Summerell · 2021 · Figshare
  85. Additional file 2 of The histone deacetylase Cfhos2 is a key epigenetic factor regulating appressorium development and pathogenesis in apple Glomerella leaf spot fungus Colletotrichum fructicola
    Mengyu Cao, Zhang, Zhaohui, Tian, Huanhuan, Yu, Wei, Zhao, Xuemei, Yang, Wenrui, Zhang, Rong, Sun, Guangyu, Liang, Xiaofei · 2022 · Figshare
  86. Additional file 6 of Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes
    Lee, Da-Young, Jongbum Jeon, Kim, Ki-Tae, Kyeongchae Cheong, Hyeunjeong Song, Gobong Choi, Jaeho Ko, Stephen Obol Opiyo, James C. Correll, Zuo, Shimin et al. · 2021 · Figshare
  87. Additional file 2 of Comparative transcriptomic analysis of races 1, 2, 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles
    Saidi R. Achari, Jacqueline Edwards, Ross Cameron Mann, Jatinder Kaur, Tim Sawbridge, Brett Anthony Summerell · 2021 · Figshare
  88. Additional file 6 of A dual RNA-seq analyses revealed dynamic arms race during the invasion of walnut by Colletotrichum gloeosporioides
    Li, Xichen, Yuhui Dong, Haiyi Yu, Zhao, Jing, Fei Yang, Weichen Song, Wang, Changxi, Jian Ning Liu, Qiang Liang, Wang, Yicheng et al. · 2024 · Figshare
  89. Additional file 5 of Evolutionary history of the cytochrome P450s from Colletotrichum species and prediction of their putative functional roles during host-pathogen interactions
    Jossué Ortiz-Álvarez, Sioly Becerra, Riccardo Baroncelli, Hernández-Rodríguez, César, Serenella Ana Sukno, Michael R. Thon · 2024 · Figshare
  90. Additional file 6 of Evolution of pathogenicity-associated genes in Rhizoctonia solani AG1-IA by genome duplication and transposon-mediated gene function alterations
    Francis, Aleena, Srayan Ghosh, Kriti Tyagi, Prakasam, V., Mamta Rani, Singh, Nagendra Pratap, Amrita Pradhan, Sundaram, R. M., C. Priyanka, Laha, G. S. et al. · 2023 · Figshare
  91. Additional file 6 of Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen
    Qian, Jiangzhao, Heba M. M. Ibrahim, Myriam Erz, Florian Kümmel, Ralph Panstruga, Stefan Kusch · 2024 · Figshare
  92. Additional file 9 of Comparative transcriptomic analysis of races 1, 2, 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles
    Saidi R. Achari, Jacqueline Edwards, Ross Cameron Mann, Jatinder Kaur, Tim Sawbridge, Brett Anthony Summerell · 2021 · Figshare
  93. Additional file 2 of A dual RNA-seq analyses revealed dynamic arms race during the invasion of walnut by Colletotrichum gloeosporioides
    Li, Xichen, Yuhui Dong, Haiyi Yu, Zhao, Jing, Fei Yang, Weichen Song, Wang, Changxi, Jian Ning Liu, Qiang Liang, Wang, Yicheng et al. · 2024 · Figshare
  94. Additional file 1 of Comparative transcriptomic analysis of races 1, 2, 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles
    Saidi R. Achari, Jacqueline Edwards, Ross Cameron Mann, Jatinder Kaur, Tim Sawbridge, Brett Anthony Summerell · 2021 · Figshare
  95. Additional file 8 of Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes
    Lee, Da-Young, Jongbum Jeon, Kim, Ki-Tae, Kyeongchae Cheong, Hyeunjeong Song, Gobong Choi, Ko, Jaeho, Stephen Obol Opiyo, James C. Correll, Zuo, Shimin et al. · 2021 · Figshare
  96. Additional file 4 of A dual RNA-seq analyses revealed dynamic arms race during the invasion of walnut by Colletotrichum gloeosporioides
    Li, Xichen, Yuhui Dong, Haiyi Yu, Zhao, Jing, Fei Yang, Weichen Song, Wang, Changxi, Jian Ning Liu, Qiang Liang, Wang, Yicheng et al. · 2024 · Figshare
  97. Additional file 1 of Plant immunity suppression by an β-1,3-glucanase of the maize anthracnose pathogen Colletotrichum graminicola
    Gu, Xiaoyu, Cao, Zhiyan, Li, Zhiqiang, Yu, Haiyue, Wende Liu · 2024 · Figshare
  98. Additional file 4 of Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen
    Qian, Jiangzhao, Heba M. M. Ibrahim, Myriam Erz, Florian Kümmel, Ralph Panstruga, Stefan Kusch · 2024 · Figshare
  99. Additional file 5 of A dual RNA-seq analyses revealed dynamic arms race during the invasion of walnut by Colletotrichum gloeosporioides
    Li, Xichen, Yuhui Dong, Haiyi Yu, Zhao, Jing, Fei Yang, Weichen Song, Wang, Changxi, Jian Ning Liu, Qiang Liang, Wang, Yicheng et al. · 2024 · Figshare
  100. Additional file 2 of The histone deacetylase HOS2 controls pathogenicity through regulation of melanin biosynthesis and appressorium formation in Colletotrichum gloeosporioides
    Liu, Shike, Wang, Qiannan, Liu, Na, Luo, Hongli, Chaozu He, Bang An · 2022 · Figshare